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Properties
| Property Name | Value |
|---|
| Product | histone deacetylase |
| Orig transcript id | gnl|cribi|Naga_100057g13.3919.mrna |
| Orig protein id | gnl|cribi|Naga_100057g13.3919 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002471.1 | supercontig | CM002471.1:359597..361166 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7337 ID=rna7337|Name=rna7337|organism=Nannochloropsis gaditana|type=mRNA|length=1906bp
CGGCACCAAATACACGAGAAACATTGAAGCAGACGAGGCTAAGCACGTTT
TCCTCTTCTTCCAGGTGAATCGTGTCTGTTCTTTCCCATGGACATGAGCT
TTTCATTACTCAGCCCTCCGCGCTACTAAGCGTCCCGATCCTCTCCTAGG
CCCATCTCGGGTCCAACTAAGATAAATATGCCAAGGAGACACAGAGCTGT
AAAGCCCAGAAAACTGTACTTATTCAATCATCAATGCAATACTGCAATAT
TCTTCTGGCCATCAACTTAATTGGCTCTTCCGATACTGTGAAATTTCTCG
TTCAACCCTCGCTGAGAAGCAACAGAAGAATGATAGTAAAGGGCTTCATT
TCACTACTCGAGGGACAAATCTAGTCAGTCATAGCATGCAAATGGACCGC
ACCGGATGACGGCAGTAATTATGATTGTCCATCTTTAGCGTGGCGCAGAT
ACATGGATATGTTGTTCATCCCTCGTGATGTCCCGTAATTTAGCTCACAC
AAGACGCGGGTCTCTGCTAGCCCGACATTCGATGACGAGTATGATGTATG
TTCTTTGCGGCCTCCTCTGATTTCTTCCACTCCATGAACGCTCTAGTTGC
AAGGATGAGAGCAGTTGTTCTGCTTCTTTTCATGATGGGCCCAGTGCAGG
CATTTGTGCCTCGCATCCCAAAGCAATCCCCTACATCTAGGTCCGAAATT
CTGATCGATGACGCGACAGCAGCTGCAAAATCAAGCACTACGCCCATTAT
TGTCCGCGCAATCGCAGACTCGATGCTCAAGGGCGGCATGCTGGTGGGCG
CAATTTTCGGAGGCAGCTTCATGGCAGGTTTGAGTAGTACCACGGGCATT
ATGGCACCAGTGCACGCTGCCGTTATTAATATGCCTCGCTGTGAAGGCGG
ATTGGGAGACGGGTGCGCGGCAATGGGGGAAGGAAACGAATTTGTTAAAA
AACTGCAGGAGCGGTCCGCCAAGAACTACGAATCCAGCAAGAAACAGAAA
TTGATCAAGTATAACCTCAATAACTTCAAAGACTATTTTGCCGTAAAAAA
TCAGAAGTTGGTCGTAAAGCCTGATGGAAAATTTATCGCCATTGATAACA
AAATCTATAAACAACTTGAAAAAGAAGGAAAAGTCGACGGCAATTATTGG
ATTTCCAAAGAAGATCCTCCTTCAGACGGTACAGTGGATTTCATTCCGGG
TGGTAGTAAGAATGACGCGCCTGCGCCTGACTTCACAGGGACGAATTAAA
TTACTCGAGGCTAATTGGAAGTATGTGAAACAGCACACCGCCTTTCTTAA
CTGGAAACCACATGAAAAACACGGAAAAGCAAATCAGGCCTCTTGTGAAG
CGGAATAGAATGAAAAAGAATGAGCGCTGTACGTGTAAAGCTTCAAAATG
CGATATAGAAAATCCATAAACAGTTCACGAGTTGGAATTCATTTGTTTAT
CGATGGGTATTTCTGTGAGGAACTGGGCTTTATGTAGTTTCCAGATTGAC
CACATAGCCTGGTAGATTGTGATAAAAATATTTCATGGTGTTCAATTAAA
AAATAAGCGTGAAAATGGGTGATTTCCGAATTCTGAGCGGCAACGGCAAG
CAAGCTGTTGCGTGCCGTTTATGAGCCATGAACGCAAGAGCGCCCGAGCG
GTAACGGTTTATGACAAGTGGGGCGTTTTTTGGGAGACAGGAACTCAACA
TTTTTTATTATCTATTTTGTTACATTTTATATCTATTGCCAGCCAAGTGA
CAGTAACACTCAATAGAACGGTACCGGTAATGGCTTTTTTCGGTCTGACA
GCCCTGGGCGCCCAAGAGCCGCTTGCCGTGTCTACGGACGCCGTTCAGCA
TTTGCATATTTTTACCGACGACGACTGGAAATTTGCCTTCGAGAGGTCTT
CTCACA back to topprotein sequence of rna7337 >rna7337-protein ID=rna7337-protein|Name=rna7337|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MTSSGFCLLNNVAIGAAYARQAYGRAPHGPFARVAIVDFDIHHGNGTEDI
VRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPH
FYPCSGREMDNDQAAPNIVNVELRPLRPPQAAPGTGKAKMLGPRKVKEYC
QRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYA
WITRELVAVAEGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARA
PSGGPSGATSDDDEAGRDGVVKDCQSHINEETDGGLAKGVMAHVMALMDD
AGTFNMAM back to topmRNA from alignment at CM002471.1:359597..361166+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7337 ID=rna7337|Name=rna7337|organism=Nannochloropsis gaditana|type=mRNA|length=1570bp|location=Sequence derived from alignment at CM002471.1:359597..361166+ (Nannochloropsis gaditana)
AAGAAAGAGCGGGCAGGTACCCCGAGCGGGCATGGAGGGCAGGAGACAGT
CTCCCAGTTCCTGGACAGCGACACGCGCGTCTGCCACGATTCCTTCCGGG
TGGCCTGCGTCGCCGCCGGCGCCGTGATACAGGCCGTGGACCAAGTTGCC
gctggccgccgccgcgtttTCGTCGCCACGCGGCCCCCAGGTCATCACGC
GGGTCCGCGCGGCGCCGTGCCCAGCCACTGCTTCTGGAAGGCCCCCTCTA
TGACCTCCTCTGGCTTCTGCCTGCTCAACAACGTGGCCATCGGGGCCGCT
TACGCCCGCCAGGCCTACGGCCGGGCCCCGCACGGGCCTTTCGCCCGCGT
CGCCATCGTGGACTTCGACATCCACCATGGGAACGGCACAGAGGACATCG
TCAGGGCCCTGCAGCCGAGTCGCCGCCTtctgcccctgcccgcctcctgg
GCGCCCGAGCACTACCAGCTCTTCAAGCCCTggctgagcgaggaggagga
tgcagccAGTGTCTTCTTCGGGAGCATCAACCTGGTGGACGGGCCGCACT
TCTACCCCTGCTCGGGCAGGGAGATGGACAACGACCAGGCAGCCCCGAAC
ATCGTGAACGTGGAGCTCCggcccctccggccccctcaGGCGGCGCCGGG
CACAGGGAAGGCCAAAATGCTGGGTCCTCGAAAGGTGAAGGAGTACTGCC
AGCGGGCCAGCGTGGAATTTCGGGAGAAGGTCAGCAGCACGCTCCTTCCG
AAACTCAAGGCGTTCGCGCCCGACTTGCTCTTCATATCCGCGGGGTAAGT
GCGACAGACACCCCGTTAGACGAAGGACCCCACATGGAGTTCCGCGCTTT
TGCTCCAAGTTGCTCGTGCCTGGACCTCTCCATTGGCTCTCTCATCATTT
CTCCCTTGTACAAACGCACTTCGCACAGCTTTGACGGGCACGTGGAGGAC
CACTACCACTACTTGACTGAGGAGGACTATGCCTGGATCACCCGCGAGCT
cgtggccgtggccgagggCACATCCGGAAAGGTGATCAGCGTGCTGGAAG
GCGGGTACCACGTCCGCCCCGACGGAGGGCCGGGCAAgcgcctccctggc
cgcccggCAAATTCCACGCGCGGGGCGAGGGCACCAAGCGGGGGGCCGAG
TGGCGCGACGTCGGATGACGACGAGGCCGGGAGAGACGGGGTCGTGAAGG
ACTGTCAGTCCCACATCAATGAGGAGACGGACGGAGGCTTGGCGAAGGGA
GTGATGGCGCATGTCATGGCCTTAATGGACGACGCCGGCACTTTCAACAT
GGCGATGTGATCGTCTTGAGTAGGAGCCcatgggggcggtggcgaggGAA
ATGTGCTCTTATGTGGATAGCGAGCCAGACTGTGCGTTCAAACAGAAACA
TAGACACCCACGTGGAACAATGTATTAACTACCTTTCTTTTTGCGAGCTG
CTGAACCGAAAGTCCATTTCCTGGCGGTAGAGTAGgcgatcgaggaggac
gatacTATTTTGTGCAGAAGTAACATTTCGATGTGCGTGAAAGAAAGTGA
ATTATTTGATGTGGTAATCA back to topCoding sequence (CDS) from alignment at CM002471.1:359597..361166+ >rna7337 ID=rna7337|Name=rna7337|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at CM002471.1:359597..361166+ (Nannochloropsis gaditana)
ATGACCTCCTCTGGCTTCTGCCTGCTCAACAACGTGGCCATCGGGGCCGC
TTACGCCCGCCAGGCCTACGGCCGGGCCCCGCACGGGCCTTTCGCCCGCG
TCGCCATCGTGGACTTCGACATCCACCATGGGAACGGCACAGAGGACATC
GTCAGGGCCCTGCAGCCGAGTCGCCGCCTtctgcccctgcccgcctcctg
gGCGCCCGAGCACTACCAGCTCTTCAAGCCCTggctgagcgaggaggagg
atgcagccAGTGTCTTCTTCGGGAGCATCAACCTGGTGGACGGGCCGCAC
TTCTACCCCTGCTCGGGCAGGGAGATGGACAACGACCAGGCAGCCCCGAA
CATCGTGAACGTGGAGCTCCggcccctccggccccctcaGGCGGCGCCGG
GCACAGGGAAGGCCAAAATGCTGGGTCCTCGAAAGGTGAAGGAGTACTGC
CAGCGGGCCAGCGTGGAATTTCGGGAGAAGGTCAGCAGCACGCTCCTTCC
GAAACTCAAGGCGTTCGCGCCCGACTTGCTCTTCATATCCGCGGGCTTTG
ACGGGCACGTGGAGGACCACTACCACTACTTGACTGAGGAGGACTATGCC
TGGATCACCCGCGAGCTcgtggccgtggccgagggCACATCCGGAAAGGT
GATCAGCGTGCTGGAAGGCGGGTACCACGTCCGCCCCGACGGAGGGCCGG
GCAAgcgcctccctggccgcccggCAAATTCCACGCGCGGGGCGAGGGCA
CCAAGCGGGGGGCCGAGTGGCGCGACGTCGGATGACGACGAGGCCGGGAG
AGACGGGGTCGTGAAGGACTGTCAGTCCCACATCAATGAGGAGACGGACG
GAGGCTTGGCGAAGGGAGTGATGGCGCATGTCATGGCCTTAATGGACGAC
GCCGGCACTTTCAACATGGCGATGTGAATGACCTCCTCTGGCTTCTGCCT
GCTCAACAACGTGGCCATCGGGGCCGCTTACGCCCGCCAGGCCTACGGCC
GGGCCCCGCACGGGCCTTTCGCCCGCGTCGCCATCGTGGACTTCGACATC
CACCATGGGAACGGCACAGAGGACATCGTCAGGGCCCTGCAGCCGAGTCG
CCGCCTtctgcccctgcccgcctcctggGCGCCCGAGCACTACCAGCTCT
TCAAGCCCTggctgagcgaggaggaggatgcagccAGTGTCTTCTTCGGG
AGCATCAACCTGGTGGACGGGCCGCACTTCTACCCCTGCTCGGGCAGGGA
GATGGACAACGACCAGGCAGCCCCGAACATCGTGAACGTGGAGCTCCggc
ccctccggccccctcaGGCGGCGCCGGGCACAGGGAAGGCCAAAATGCTG
GGTCCTCGAAAGGTGAAGGAGTACTGCCAGCGGGCCAGCGTGGAATTTCG
GGAGAAGGTCAGCAGCACGCTCCTTCCGAAACTCAAGGCGTTCGCGCCCG
ACTTGCTCTTCATATCCGCGGGCTTTGACGGGCACGTGGAGGACCACTAC
CACTACTTGACTGAGGAGGACTATGCCTGGATCACCCGCGAGCTcgtggc
cgtggccgagggCACATCCGGAAAGGTGATCAGCGTGCTGGAAGGCGGGT
ACCACGTCCGCCCCGACGGAGGGCCGGGCAAgcgcctccctggccgcccg
gCAAATTCCACGCGCGGGGCGAGGGCACCAAGCGGGGGGCCGAGTGGCGC
GACGTCGGATGACGACGAGGCCGGGAGAGACGGGGTCGTGAAGGACTGTC
AGTCCCACATCAATGAGGAGACGGACGGAGGCTTGGCGAAGGGAGTGATG
GCGCATGTCATGGCCTTAATGGACGACGCCGGCACTTTCAACATGGCGAT
GTGA back to top
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