EWM23360.1, cds7320 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|585104368|gb|EWM23360.1| (histone deacetylase [Nannochloropsis gaditana]) HSP 1 Score: 637.106 bits (1642), Expect = 0.000e+0 Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGPFARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGREMDNDQAAPNIVNVELRPLRPPQAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVAEGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETDGGLAKGVMAHVMALMDDAGTFNMAM 308
MTSSGFCLLNNVAIGAAYARQAYGRAPHGPFARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGREMDNDQAAPNIVNVELRPLRPPQAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVAEGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETDGGLAKGVMAHVMALMDDAGTFNMAM
Sbjct: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGPFARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGREMDNDQAAPNIVNVELRPLRPPQAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVAEGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETDGGLAKGVMAHVMALMDDAGTFNMAM 308
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|299116701|emb|CBN74846.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 241.121 bits (614), Expect = 9.677e-69 Identity = 131/230 (56.96%), Postives = 156/230 (67.83%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGPFARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGREMD--NDQAAPNIVNVELRPLRPPQAAPGTG-KAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVAEGTSGKVISVLEGGYHV 227
M SSGFCLLNN AIGAAYAR YGR+ G +RVAIVD DIHHGNGTE+IVR L+P LPLP SW P ++KPWL ++ DA +VFFGS++L D FYP SG E + ND A NIVNV L PL P PG K + L KV EY +A EF++K TLL +LK F+PDLL ISAGFDGHVED+YHYL+ E Y W+T L +G+V+SVLEGGY +
Sbjct: 591 MNSSGFCLLNNAAIGAAYARCRYGRS--GELSRVAIVDIDIHHGNGTEEIVRCLRPMTTRLPLPPSWPPMTKTVYKPWL-DDGDADNVFFGSVSLQDKDLFYPASGTEEERFNDNDA-NIVNVSLSPLGP---TPGDEPKKRALTKTKVTEYTNKACNEFKQKCQRTLLARLKEFSPDLLIISAGFDGHVEDYYHYLSNEVYEWVTLALADCC--PTGRVVSVLEGGYSL 811
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|1173961619|gb|OQS07634.1| (histone deacetylase [Thraustotheca clavata]) HSP 1 Score: 220.32 bits (560), Expect = 2.795e-64 Identity = 129/289 (44.64%), Postives = 170/289 (58.82%), Query Frame = 0
Query: 2 TSSGFCLLNNVAIGAAYARQAY-------GRAPHGPFARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPH-FYPCSGR--EMDNDQA-APNIVNVELRPLRPPQAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVA-EGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHI 278
S+GFCLLNNVAI AAYA Y G +P RVAIVDFDIHHGNGTE+I+R L P PLPASWAP+ + + PW + +DA +V+F S++L D FYP SG+ +D A A NIVN+ L+ L P +P K+ K + ++AS EFR K SS L P L AF PDL+ ISAGFDGHV+D+YH+LTE DY WIT +LV +A E G+++SVLEGGY+++ G+ +N GA A D + + + C +H+
Sbjct: 256 CSNGFCLLNNVAIAAAYAMSNYSTSYYSAGVSPFAEIRRVAIVDFDIHHGNGTEEIIRNLYPHYHRYPLPASWAPKSFHSYMPW-RDSQDAQNVYFASLHLHDDQVPFYPGSGKGPHGQHDLANAENIVNIPLKRLIPHGKSPSDCSTKIR-----KTFIEQASEEFRLKASSILFPSLLAFNPDLILISAGFDGHVDDYYHFLTEWDYEWITEKLVDIADECCCGRIVSVLEGGYNLQSHNA------GKTSNIMLGANF-----HQAVLDTEMLDYGALARSCAAHV 527
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|669171849|ref|XP_008621273.1| (hypothetical protein SDRG_16829 [Saprolegnia diclina VS20] >gi|530727065|gb|EQC25307.1| hypothetical protein SDRG_16829 [Saprolegnia diclina VS20]) HSP 1 Score: 210.69 bits (535), Expect = 2.485e-60 Identity = 126/289 (43.60%), Postives = 169/289 (58.48%), Query Frame = 0
Query: 3 SSGFCLLNNVAIGAAYARQAYG-------RAPHGPFARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVD-GPHFYPCSGR--EMDNDQAAPN-IVNVELRPLRPPQAAPGTGKAKMLGPRKVK-EYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVAEGTS-GKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHI 278
S GFCLLNNVAIGAAYA YG H RVAI+DFDIHHGNGTE+IVR L+ PLP SWAP+ + + PW +++DA +VFF S+++ D FYP SGR N+ A+ N IVN+ L L G + G + + E+ +RAS EF+ K + LLP L+AFAPDL+ IS+GFDGHV+D+YH LTE DY WIT+ LV +A+ G+++SVLEGGY + P P+ ++ A + G D D G+ + C +H+
Sbjct: 288 SCGFCLLNNVAIGAAYAMTTYGPSHYSKASISHATVRRVAIIDFDIHHGNGTEEIVRNLRLHDHRYPLPPSWAPKTFPSYMPW-RDDDDADNVFFASMHVYDETTAFYPGSGRGPHGRNELASCNTIVNIPLTNL---------GASGKRGTERTRLEHMERASSEFQSKATEVLLPALRAFAPDLILISSGFDGHVDDYYHGLTEWDYEWITQRLVEIADNCCDGRIVSVLEGGYSLAP-----------PSKASSSNLALAADRHGRDVDPDLIKFGGMARSCAAHV 555
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|568004904|gb|ETL79213.1| (hypothetical protein L917_20092 [Phytophthora parasitica]) HSP 1 Score: 211.46 bits (537), Expect = 2.800e-59 Identity = 131/329 (39.82%), Postives = 178/329 (54.10%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGP------------------FARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGR-------EMDNDQAAPNIVNVELRPLRPP---QAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVA-EGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETD--GGLAKGVMAHVMALM 298
M + GFCL+NNV IGA+YA Y + P RVAIVDFDIHHGNGTE+++R L P ++ PLP SWAP + +KPW +E D +VFF SI+L D +FYPCSG E++ + NIVN+ L+ L P + T KAK + +++S FR V+ L+P L F PDL+ +SAGFDGH +D Y++L+E+DY WIT ++ AVA E G+++SVLEGGY+V P RP +R ATS+ A K ++EE D G LA+ V +HV AL+
Sbjct: 452 MCTCGFCLINNVCIGASYAMSNYSSPFYTPAISSMNSDSLLSSTKRANIQRVAIVDFDIHHGNGTEEVIRNLIPHKQNYPLPPSWAPVQFSSYKPW-RDENDPDNVFFSSIHLYDDDNFYPCSGMGPHGCSPELEKSK---NIVNLPLKVLGPKYLDERLKLTSKAK-------RSLMEQSSKTFRNNVTKKLIPALTKFQPDLIMLSAGFDGHADDFYYFLSEDDYGWITDQITAVADECCDGRIVSVLEGGYNVVPSKF------QRPQPKSR---------KNATSNFHHAA-----KMHNRPVDEELDSYGSLARSVASHVAALL 749
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|675211321|ref|XP_008914545.1| (hypothetical protein PPTG_18183 [Phytophthora parasitica INRA-310] >gi|568085270|gb|ETN00181.1| hypothetical protein PPTG_18183 [Phytophthora parasitica INRA-310]) HSP 1 Score: 211.46 bits (537), Expect = 2.887e-59 Identity = 131/329 (39.82%), Postives = 178/329 (54.10%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGP------------------FARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGR-------EMDNDQAAPNIVNVELRPLRPP---QAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVA-EGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETD--GGLAKGVMAHVMALM 298
M + GFCL+NNV IGA+YA Y + P RVAIVDFDIHHGNGTE+++R L P ++ PLP SWAP + +KPW +E D +VFF SI+L D +FYPCSG E++ + NIVN+ L+ L P + T KAK + +++S FR V+ L+P L F PDL+ +SAGFDGH +D Y++L+E+DY WIT ++ AVA E G+++SVLEGGY+V P RP +R ATS+ A K ++EE D G LA+ V +HV AL+
Sbjct: 452 MCTCGFCLINNVCIGASYAMSNYSSPFYTPAISSMNSDSLLSSTKRANIQRVAIVDFDIHHGNGTEEVIRNLIPHKQNYPLPPSWAPVQFSSYKPW-RDENDPDNVFFSSIHLYDDDNFYPCSGMGPHGCSPELEKSK---NIVNLPLKVLGPKYLDERLKLTSKAK-------RSLMEQSSKTFRNNVTKKLIPALTKFQPDLIMLSAGFDGHADDFYYFLSEDDYGWITDQITAVADECCDGRIVSVLEGGYNVVPSKF------QRPQPKSR---------KNATSNFHHAA-----KMHNRPVDEELDSYGSLARSVASHVAALL 749
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|568034790|gb|ETM32455.1| (hypothetical protein L914_20124 [Phytophthora parasitica]) HSP 1 Score: 211.46 bits (537), Expect = 3.071e-59 Identity = 131/329 (39.82%), Postives = 178/329 (54.10%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGP------------------FARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGR-------EMDNDQAAPNIVNVELRPLRPP---QAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVA-EGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETD--GGLAKGVMAHVMALM 298
M + GFCL+NNV IGA+YA Y + P RVAIVDFDIHHGNGTE+++R L P ++ PLP SWAP + +KPW +E D +VFF SI+L D +FYPCSG E++ + NIVN+ L+ L P + T KAK + +++S FR V+ L+P L F PDL+ +SAGFDGH +D Y++L+E+DY WIT ++ AVA E G+++SVLEGGY+V P RP +R ATS+ A K ++EE D G LA+ V +HV AL+
Sbjct: 452 MCTCGFCLINNVCIGASYAMSNYSSPFYTPAISSMNSDSLLSSTKRANIQRVAIVDFDIHHGNGTEEVIRNLIPHKQNYPLPPSWAPVQFSSYKPW-RDENDPDNVFFSSIHLYDDDNFYPCSGMGPHGCSPELEKSK---NIVNLPLKVLGPKYLDERLKLTSKAK-------RSLMEQSSKTFRNNVTKKLIPALTKFQPDLIMLSAGFDGHADDFYYFLSEDDYGWITDQITAVADECCDGRIVSVLEGGYNVVPSKF------QRPQPKSR---------KNATSNFHHAA-----KMHNRPVDEELDSYGSLARSVASHVAALL 749
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|570312976|gb|ETO60924.1| (hypothetical protein F444_20955 [Phytophthora parasitica P1976]) HSP 1 Score: 211.075 bits (536), Expect = 3.889e-59 Identity = 131/329 (39.82%), Postives = 178/329 (54.10%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGP------------------FARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGR-------EMDNDQAAPNIVNVELRPLRPP---QAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVA-EGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETD--GGLAKGVMAHVMALM 298
M + GFCL+NNV IGA+YA Y + P RVAIVDFDIHHGNGTE+++R L P ++ PLP SWAP + +KPW +E D +VFF SI+L D +FYPCSG E++ + NIVN+ L+ L P + T KAK + +++S FR V+ L+P L F PDL+ +SAGFDGH +D Y++L+E+DY WIT ++ AVA E G+++SVLEGGY+V P RP +R ATS+ A K ++EE D G LA+ V +HV AL+
Sbjct: 452 MCTCGFCLINNVCIGASYAMSNYSSPFYTPAISSMNSDSLLSSTKRANIQRVAIVDFDIHHGNGTEEVIRNLIPHKQNYPLPPSWAPVQFSSYKPW-RDENDPDNVFFSSIHLYDDDNFYPCSGMGPHGCSPELEKSK---NIVNLPLKVLGPKYLDERLKLTSKAK-------RSLMEQSSKTFRNNVTKKLIPALTKFQPDLIMLSAGFDGHADDFYYFLSEDDYGWITDQITAVADECCDGRIVSVLEGGYNVVPSKF------QRPQPKSR---------KNATSNFHHAA-----KMHNRPVDEELDSYGSLARSVASHVAALL 749
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|570967073|gb|ETP30192.1| (hypothetical protein F442_20743 [Phytophthora parasitica P10297]) HSP 1 Score: 211.075 bits (536), Expect = 4.052e-59 Identity = 131/329 (39.82%), Postives = 178/329 (54.10%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGP------------------FARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGR-------EMDNDQAAPNIVNVELRPLRPP---QAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVA-EGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETD--GGLAKGVMAHVMALM 298
M + GFCL+NNV IGA+YA Y + P RVAIVDFDIHHGNGTE+++R L P ++ PLP SWAP + +KPW +E D +VFF SI+L D +FYPCSG E++ + NIVN+ L+ L P + T KAK + +++S FR V+ L+P L F PDL+ +SAGFDGH +D Y++L+E+DY WIT ++ AVA E G+++SVLEGGY+V P RP +R ATS+ A K ++EE D G LA+ V +HV AL+
Sbjct: 452 MCTCGFCLINNVCIGASYAMSNYSSPFYTPAISSMNSDSLLSSTKRANIQRVAIVDFDIHHGNGTEEVIRNLIPHKQNYPLPPSWAPVQFSSYKPW-RDENDPDNVFFSSIHLYDDDNFYPCSGMGPHGCSPELEKSK---NIVNLPLKVLGPKYLDERLKLTSKAK-------RSLMEQSSKTFRNNVTKKLIPALTKFQPDLIMLSAGFDGHADDFYYFLSEDDYGWITDQITAVADECCDGRIVSVLEGGYNVVPSKF------QRPQPKSR---------KNATSNFHHAA-----KMHNRPVDEELDSYGSLARSVASHVAALL 749
BLAST of EWM23360.1 vs. NCBI_GenBank
Match: gi|566009260|gb|ETI32171.1| (hypothetical protein F443_20944 [Phytophthora parasitica P1569]) HSP 1 Score: 211.075 bits (536), Expect = 4.136e-59 Identity = 131/329 (39.82%), Postives = 178/329 (54.10%), Query Frame = 0
Query: 1 MTSSGFCLLNNVAIGAAYARQAYGRAPHGP------------------FARVAIVDFDIHHGNGTEDIVRALQPSRRLLPLPASWAPEHYQLFKPWLSEEEDAASVFFGSINLVDGPHFYPCSGR-------EMDNDQAAPNIVNVELRPLRPP---QAAPGTGKAKMLGPRKVKEYCQRASVEFREKVSSTLLPKLKAFAPDLLFISAGFDGHVEDHYHYLTEEDYAWITRELVAVA-EGTSGKVISVLEGGYHVRPDGGPGKRLPGRPANSTRGARAPSGGPSGATSDDDEAGRDGVVKDCQSHINEETD--GGLAKGVMAHVMALM 298
M + GFCL+NNV IGA+YA Y + P RVAIVDFDIHHGNGTE+++R L P ++ PLP SWAP + +KPW +E D +VFF SI+L D +FYPCSG E++ + NIVN+ L+ L P + T KAK + +++S FR V+ L+P L F PDL+ +SAGFDGH +D Y++L+E+DY WIT ++ AVA E G+++SVLEGGY+V P RP +R ATS+ A K ++EE D G LA+ V +HV AL+
Sbjct: 452 MCTCGFCLINNVCIGASYAMSNYSSPFYTPAISSMNSDSLLSSTKRANIQRVAIVDFDIHHGNGTEEVIRNLIPHKQNYPLPPSWAPVQFSSYKPW-RDENDPDNVFFSSIHLYDDDNFYPCSGMGPHGCSPELEKSK---NIVNLPLKVLGPKYLDERLKLTSKAK-------RSLMEQSSKTFRNNVTKKLIPALTKFQPDLIMLSAGFDGHADDFYYFLSEDDYGWITDQITAVADECCDGRIVSVLEGGYNVVPSKF------QRPQPKSR---------KNATSNFHHAA-----KMHNRPVDEELDSYGSLARSVASHVAALL 749 The following BLAST results are available for this feature:
BLAST of EWM23360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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