rna7335, rna7335 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7335
Unique Name	rna7335
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	993
Alignment location	CM002471.1:353313..354658 +

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Properties


Property Name	Value
Product	protein tyrosine phosphatase
Orig transcript id	gnl\|cribi\|Naga_100057g15.3928.mrna
Orig protein id	gnl\|cribi\|Naga_100057g15.3928
Gene	PTP
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:353313..354658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PTP	gene7099	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7335	rna7335-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23369.1	cds7318	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:353313..354658+
coding sequence from alignment at CM002471.1:353313..354658+

mRNA sequence

>rna7335 ID=rna7335|Name=rna7335|organism=Nannochloropsis gaditana|type=mRNA|length=993bp
ATGTCCTTAAATTTGCATCAGCCCGAGGCCGGCTTCCAACAAGATCAACG
GAGTCACGGGACAACAACCTTTATCTGGCAGCAGCCAGAATTAATAAATG
TGTGCGTACTCAAAGTCCTCCTCTTCACACGGCTTGGAGGGGAACAAAAC
CTGTCTATCAGCATCATGGTCAGCGCGTATACTGTTTTTAGCCACCACTG
TCCTTGCTTCCCACGCCTTCATCCAGCCCAGCCCATTCAGCCCATGCCCC
TTGCCCGTTGCCCCCCCGGCCCCAAGCGAAGAGACGCCCTGAGCAGCCTG
CGGCCTCAGGAAATGGACATGGACGCAGGCGGTCCAGGCGCAGGGAGCGA
CTTATCCATTTTAAATCAAGTGATGTTGGTGGGACGCTTAGGTAGCGAGC
CAGCGGTGAAGTACCTGGAGAGTGGAAATTGCGTTCTCTCCATCTCGATG
GCCGTCAACCGGGAGACAAGCCCAGGACGGCAGAACATGGAAGCCGTGCC
AAAGGCGCCGGAGGTGGATTGGATTCGATTGGAAGCCTGGGGAAGGACGG
CAGAGGGCATGGCCGCGAATGCAAGGAAGGGCTCCAGGGTGTGGGTGGTC
GGGAGATTGGTGACGAACAGCTGGGTGGACAGGTACGGCCAGAACAGGAA
TGAACTGAAAGTGCGCATCAGGCGGATAGAGGTCCTCCAATCAGGCAGGA
GCCAGACACAGCCTCCCATGGGGGGCGAGTACTATCAGCAGGGGGGTGGA
TGGGACGGAAAGGGAGCAGGAAGCCGCGAGGAGCAGTCTTCCATGGTGAT
GCCAGATTATCTTGCAAGCGGAATGGATGGTGGACAGGAGCAATCTCCAT
ATTCTCGAAATGGTGCCGGCGCACCTTCTCCAGTGGCGTCACCGTTTACG
AAGAAGGGGTCTTACGGGCATGGAGGAGGAACCGGAGGAGGGGGGCAATT
TGAAGTGGACGAGTATGAGGCAGATACAGACATCCCTTTCTAG

protein sequence of rna7335

>rna7335-protein ID=rna7335-protein|Name=rna7335|organism=Nannochloropsis gaditana|type=polypeptide|length=284bp
MPHTWSDLPFSHLFSPVRGLLWLFFLAGLPALGSSYNLLLPAGWTPRGRC
TRSLHMSNLDPAPASAAKSVLFVCLGNICRSPTAEAVFKSVVEREGKSSH
IHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRP
LKAEDIDFFDFLICMDGANKSAVMEAADYWGKTQTAAKKIRLMTEYCTIN
KGARTVPDPYYGGADGFEKVLDLLQDACDVSKLQVVQKCGYSPIASSNCL
CAFVLRTSLVRFCSFHVYESSIICAAVPYVTTAH

mRNA from alignment at CM002471.1:353313..354658+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7335 ID=rna7335|Name=rna7335|organism=Nannochloropsis gaditana|type=mRNA|length=1346bp|location=Sequence derived from alignment at CM002471.1:353313..354658+ (Nannochloropsis gaditana)
ATGCCCCACACGTGGTCAGATCTCCCGTTTTCACACCTGTTTAGCCCTGT
ACGAGGACTTCTGTGGCTCTTCTTCCTAGCcggcctgcccgccctcggaA
GCAGCTataacctcctgctccctgcTGGCTGGACTCCACGCGGACGGTGC
ACCCGCAGCCTGCACATGTCGAACCTCGACCCTGCGCCGGCTTCCGCCGC
CAAGTCTGTACTCTTTGTATGCCTTGGCAATATATGCAGAAGTCCAACGG
TGagttgaagaggaagcggagcaTGCTTGCTTGAGAGCAGCAGTTGTCGT
TGTCGAAACCCGTGCCGGCTCTGATCGTAGTGGGAAAGTCCTAATGCCTG
CGACTACCCGACCATATTAACAGGCTGAAGCAGTTTTCAAGAGCGTTgtc
gagagggaaggcaaatGTAGGTATTCAAGTTGCTGCAGTCACGTCTCCAC
GCGCTTGCTTTTTACAGCCGGCACGCCTCCTCTCAAATCAGCGCGACACC
TTCAACCAGCTCTCATATTCTGCATACTCATTCCCAAATTCTCTCCAGCC
TCTCACATTCATATTGACAGTTGCGGAACAGGCGGCGGTAACCCAGGATG
GTACCAGAAAGGCGGTTGGAGTTACCACGAAGGAGATATGGCTGATAGTC
GCATGCGTGCTGCCGCTTCGAAACGCGGAATAGACATAACTTCTCGCTCT
CGTCCCCTCAAAGCAGAGGATATTGATTTTTTCGATTTTTTAATTTGTAT
GGATGGTGCCAATAAGAGCGCTGTCATGGAAGCGGCTGATTATTGGGGGA
AAACGCAAACAGCAGCCAAAAAGATTCGGTTGATGACGGAATATTGCACG
ATAAACAAGGGGGCGCGGTAGGTGTTTTCATATTTACTTTAAACTTCTGA
AGATGTAAGGATAGGAGGATTGCTACTAATATAGGTCGATGAAGCGGCTT
CTTACACGCGCGCCACAAGAagttttttttaatttcgACGAAAAGGCCTG
TCACGCATCCACCACATTTGTCGACTCCTTTCACATTCCCCATATACATT
CACAGGACGGTGCCTGACCCATACTACGGCGGCGCTGATGGGTTTGAGAA
AGTGTTGGACCTACTACAGGATGCATGCGATGGTCTACTAGCAAGCATGT
AGGTCTAGGATATCGTGAAGACCTTTAAGTTAGTAAGCTTCAAGTCGTTC
AGAAATGTGGATACTCTCCAATTGCCTCTTCAAATTGCTTGTGCGCTTTC
GTTTTACGAACGTCTCTGGTGAGATTTTGCAGTTTTCATGTTTATGAGTC
ATCCATCATATGCGCTGCTGTCCCTTATGTTACAACTGCTCATTAA

Coding sequence (CDS) from alignment at CM002471.1:353313..354658+

>rna7335 ID=rna7335|Name=rna7335|organism=Nannochloropsis gaditana|type=CDS|length=4275bp|location=Sequence derived from alignment at CM002471.1:353313..354658+ (Nannochloropsis gaditana)
ATGCCCCACACGTGGTCAGATCTCCCGTTTTCACACCTGTTTAGCCCTGT
ACGAGGACTTCTGTGGCTCTTCTTCCTAGCcggcctgcccgccctcggaA
GCAGCTataacctcctgctccctgcTGGCTGGACTCCACGCGGACGGTGC
ACCCGCAGCCTGCACATGTCGAACCTCGACCCTGCGCCGGCTTCCGCCGC
CAAGTCTGTACTCTTTGTATGCCTTGGCAATATATGCAGAAGTCCAACGG
CTGAAGCAGTTTTCAAGAGCGTTgtcgagagggaaggcaaatCCTCTCAC
ATTCATATTGACAGTTGCGGAACAGGCGGCGGTAACCCAGGATGGTACCA
GAAAGGCGGTTGGAGTTACCACGAAGGAGATATGGCTGATAGTCGCATGC
GTGCTGCCGCTTCGAAACGCGGAATAGACATAACTTCTCGCTCTCGTCCC
CTCAAAGCAGAGGATATTGATTTTTTCGATTTTTTAATTTGTATGGATGG
TGCCAATAAGAGCGCTGTCATGGAAGCGGCTGATTATTGGGGGAAAACGC
AAACAGCAGCCAAAAAGATTCGGTTGATGACGGAATATTGCACGATAAAC
AAGGGGGCGCGGACGGTGCCTGACCCATACTACGGCGGCGCTGATGGGTT
TGAGAAAGTGTTGGACCTACTACAGGATGCATGCGATGTTAGTAAGCTTC
AAGTCGTTCAGAAATGTGGATACTCTCCAATTGCCTCTTCAAATTGCTTG
TGCGCTTTCGTTTTACGAACGTCTCTGGTGAGATTTTGCAGTTTTCATGT
TTATGAGTCATCCATCATATGCGCTGCTGTCCCTTATGTTACAACTGCTC
ATTAAATGCCCCACACGTGGTCAGATCTCCCGTTTTCACACCTGTTTAGC
CCTGTACGAGGACTTCTGTGGCTCTTCTTCCTAGCcggcctgcccgccct
cggaAGCAGCTataacctcctgctccctgcTGGCTGGACTCCACGCGGAC
GGTGCACCCGCAGCCTGCACATGTCGAACCTCGACCCTGCGCCGGCTTCC
GCCGCCAAGTCTGTACTCTTTGTATGCCTTGGCAATATATGCAGAAGTCC
AACGGCTGAAGCAGTTTTCAAGAGCGTTgtcgagagggaaggcaaatCCT
CTCACATTCATATTGACAGTTGCGGAACAGGCGGCGGTAACCCAGGATGG
TACCAGAAAGGCGGTTGGAGTTACCACGAAGGAGATATGGCTGATAGTCG
CATGCGTGCTGCCGCTTCGAAACGCGGAATAGACATAACTTCTCGCTCTC
GTCCCCTCAAAGCAGAGGATATTGATTTTTTCGATTTTTTAATTTGTATG
GATGGTGCCAATAAGAGCGCTGTCATGGAAGCGGCTGATTATTGGGGGAA
AACGCAAACAGCAGCCAAAAAGATTCGGTTGATGACGGAATATTGCACGA
TAAACAAGGGGGCGCGGACGGTGCCTGACCCATACTACGGCGGCGCTGAT
GGGTTTGAGAAAGTGTTGGACCTACTACAGGATGCATGCGATGTTAGTAA
GCTTCAAGTCGTTCAGAAATGTGGATACTCTCCAATTGCCTCTTCAAATT
GCTTGTGCGCTTTCGTTTTACGAACGTCTCTGGTGAGATTTTGCAGTTTT
CATGTTTATGAGTCATCCATCATATGCGCTGCTGTCCCTTATGTTACAAC
TGCTCATTAAATGCCCCACACGTGGTCAGATCTCCCGTTTTCACACCTGT
TTAGCCCTGTACGAGGACTTCTGTGGCTCTTCTTCCTAGCcggcctgccc
gccctcggaAGCAGCTataacctcctgctccctgcTGGCTGGACTCCACG
CGGACGGTGCACCCGCAGCCTGCACATGTCGAACCTCGACCCTGCGCCGG
CTTCCGCCGCCAAGTCTGTACTCTTTGTATGCCTTGGCAATATATGCAGA
AGTCCAACGGCTGAAGCAGTTTTCAAGAGCGTTgtcgagagggaaggcaa
atCCTCTCACATTCATATTGACAGTTGCGGAACAGGCGGCGGTAACCCAG
GATGGTACCAGAAAGGCGGTTGGAGTTACCACGAAGGAGATATGGCTGAT
AGTCGCATGCGTGCTGCCGCTTCGAAACGCGGAATAGACATAACTTCTCG
CTCTCGTCCCCTCAAAGCAGAGGATATTGATTTTTTCGATTTTTTAATTT
GTATGGATGGTGCCAATAAGAGCGCTGTCATGGAAGCGGCTGATTATTGG
GGGAAAACGCAAACAGCAGCCAAAAAGATTCGGTTGATGACGGAATATTG
CACGATAAACAAGGGGGCGCGGACGGTGCCTGACCCATACTACGGCGGCG
CTGATGGGTTTGAGAAAGTGTTGGACCTACTACAGGATGCATGCGATGTT
AGTAAGCTTCAAGTCGTTCAGAAATGTGGATACTCTCCAATTGCCTCTTC
AAATTGCTTGTGCGCTTTCGTTTTACGAACGTCTCTGGTGAGATTTTGCA
GTTTTCATGTTTATGAGTCATCCATCATATGCGCTGCTGTCCCTTATGTT
ACAACTGCTCATTAAATGCCCCACACGTGGTCAGATCTCCCGTTTTCACA
CCTGTTTAGCCCTGTACGAGGACTTCTGTGGCTCTTCTTCCTAGCcggcc
tgcccgccctcggaAGCAGCTataacctcctgctccctgcTGGCTGGACT
CCACGCGGACGGTGCACCCGCAGCCTGCACATGTCGAACCTCGACCCTGC
GCCGGCTTCCGCCGCCAAGTCTGTACTCTTTGTATGCCTTGGCAATATAT
GCAGAAGTCCAACGGCTGAAGCAGTTTTCAAGAGCGTTgtcgagagggaa
ggcaaatCCTCTCACATTCATATTGACAGTTGCGGAACAGGCGGCGGTAA
CCCAGGATGGTACCAGAAAGGCGGTTGGAGTTACCACGAAGGAGATATGG
CTGATAGTCGCATGCGTGCTGCCGCTTCGAAACGCGGAATAGACATAACT
TCTCGCTCTCGTCCCCTCAAAGCAGAGGATATTGATTTTTTCGATTTTTT
AATTTGTATGGATGGTGCCAATAAGAGCGCTGTCATGGAAGCGGCTGATT
ATTGGGGGAAAACGCAAACAGCAGCCAAAAAGATTCGGTTGATGACGGAA
TATTGCACGATAAACAAGGGGGCGCGGACGGTGCCTGACCCATACTACGG
CGGCGCTGATGGGTTTGAGAAAGTGTTGGACCTACTACAGGATGCATGCG
ATGTTAGTAAGCTTCAAGTCGTTCAGAAATGTGGATACTCTCCAATTGCC
TCTTCAAATTGCTTGTGCGCTTTCGTTTTACGAACGTCTCTGGTGAGATT
TTGCAGTTTTCATGTTTATGAGTCATCCATCATATGCGCTGCTGTCCCTT
ATGTTACAACTGCTCATTAAATGCCCCACACGTGGTCAGATCTCCCGTTT
TCACACCTGTTTAGCCCTGTACGAGGACTTCTGTGGCTCTTCTTCCTAGC
cggcctgcccgccctcggaAGCAGCTataacctcctgctccctgcTGGCT
GGACTCCACGCGGACGGTGCACCCGCAGCCTGCACATGTCGAACCTCGAC
CCTGCGCCGGCTTCCGCCGCCAAGTCTGTACTCTTTGTATGCCTTGGCAA
TATATGCAGAAGTCCAACGGCTGAAGCAGTTTTCAAGAGCGTTgtcgaga
gggaaggcaaatCCTCTCACATTCATATTGACAGTTGCGGAACAGGCGGC
GGTAACCCAGGATGGTACCAGAAAGGCGGTTGGAGTTACCACGAAGGAGA
TATGGCTGATAGTCGCATGCGTGCTGCCGCTTCGAAACGCGGAATAGACA
TAACTTCTCGCTCTCGTCCCCTCAAAGCAGAGGATATTGATTTTTTCGAT
TTTTTAATTTGTATGGATGGTGCCAATAAGAGCGCTGTCATGGAAGCGGC
TGATTATTGGGGGAAAACGCAAACAGCAGCCAAAAAGATTCGGTTGATGA
CGGAATATTGCACGATAAACAAGGGGGCGCGGACGGTGCCTGACCCATAC
TACGGCGGCGCTGATGGGTTTGAGAAAGTGTTGGACCTACTACAGGATGC
ATGCGATGTTAGTAAGCTTCAAGTCGTTCAGAAATGTGGATACTCTCCAA
TTGCCTCTTCAAATTGCTTGTGCGCTTTCGTTTTACGAACGTCTCTGGTG
AGATTTTGCAGTTTTCATGTTTATGAGTCATCCATCATATGCGCTGCTGT
CCCTTATGTTACAACTGCTCATTAA

Synonyms

Publications