EWM23369.1, cds7318 (CDS) Nannochloropsis gaditana

Overview
NameEWM23369.1
Unique Namecds7318
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:353313..353561 +
Alignment locationCM002471.1:353686..353728 +
Alignment locationCM002471.1:353861..354179 +
Alignment locationCM002471.1:354368..354444 +
Alignment locationCM002471.1:354492..354658 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23369.1
Productprotein tyrosine phosphatase
Orig transcript idgnl|cribi|Naga_100057g15.3928.mrna
GenePTP
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:353313..353561 +
CM002471.1supercontigCM002471.1:353686..353728 +
CM002471.1supercontigCM002471.1:353861..354179 +
CM002471.1supercontigCM002471.1:354368..354444 +
CM002471.1supercontigCM002471.1:354492..354658 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004725protein tyrosine phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006470protein dephosphorylation
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR017867Tyr_phospatase_low_mol_wt
IPR023485Ptyr_pPase_SF
Homology
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|585104377|gb|EWM23369.1| (protein tyrosine phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 0
Query:    1 MPHTWSDLPFSHLFSPVRGLLWLFFLAGLPALGSSYNLLLPAGWTPRGRCTRSLHMSNLDPAPASAAKSVLFVCLGNICRSPTAEAVFKSVVEREGKSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKTQTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACDVSKLQVVQKCGYSPIASSNCLCAFVLRTSLVRFCSFHVYESSIICAAVPYVTTAH 284
            MPHTWSDLPFSHLFSPVRGLLWLFFLAGLPALGSSYNLLLPAGWTPRGRCTRSLHMSNLDPAPASAAKSVLFVCLGNICRSPTAEAVFKSVVEREGKSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKTQTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACDVSKLQVVQKCGYSPIASSNCLCAFVLRTSLVRFCSFHVYESSIICAAVPYVTTAH
Sbjct:    1 MPHTWSDLPFSHLFSPVRGLLWLFFLAGLPALGSSYNLLLPAGWTPRGRCTRSLHMSNLDPAPASAAKSVLFVCLGNICRSPTAEAVFKSVVEREGKSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKTQTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACDVSKLQVVQKCGYSPIASSNCLCAFVLRTSLVRFCSFHVYESSIICAAVPYVTTAH 284          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|299116693|emb|CBN74838.1| (Protein tyrosine phosphatase [Ectocarpus siliculosus])

HSP 1 Score: 211.46 bits (537), Expect = 2.248e-64
Identity = 98/170 (57.65%), Postives = 120/170 (70.59%), Query Frame = 0
Query:   70 VLFVCLGNICRSPTAEAVFKSVVEREGKSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKTQTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACDVSKLQVVQKC 239
            VLFVCLGNICRSPTAEAVFK V  + G +    IDSCGTGGGNP WY++GG SYH GD  D+RM AAA+KRG+ ++  SRPL   D D FD ++ MD AN  A+  AA++WGK+Q A  K+R MT YC  +   ++VPDPYYGG  GFE VLDLL DAC      +++KC
Sbjct:   82 VLFVCLGNICRSPTAEAVFKQVTSKAGDADKFEIDSCGTGGGNPSWYKEGGESYHTGDSPDARMTAAAAKRGVMLSGASRPLTPGDFDKFDLVVGMDAANTKAMSTAAEHWGKSQEAISKLRTMTSYCRSSGDVKSVPDPYYGGPQGFETVLDLLDDACQ----GLLEKC 247          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|695383646|ref|XP_009517773.1| (hypothetical protein PHYSODRAFT_471431 [Phytophthora sojae] >gi|348690684|gb|EGZ30498.1| hypothetical protein PHYSODRAFT_471431 [Phytophthora sojae])

HSP 1 Score: 205.297 bits (521), Expect = 4.972e-63
Identity = 102/166 (61.45%), Postives = 119/166 (71.69%), Query Frame = 0
Query:   69 SVLFVCLGNICRSPTAEAVFKSVVEREG--KSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKT---QTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229
            SVLFVCLGNICRSP  EAV K +V ++    +S  HIDSCGTGGGNP WY  GGWSYHEGD ADSRM   A KRG  +TSRSRPL  +DID FD++ICM+  NK+AV+EAA+ WG       A +KI +MT YC   K A  VPDP+Y G  GF+ VLDLL+DACD
Sbjct:    3 SVLFVCLGNICRSPAGEAVLKGIVAKKAGADASSFHIDSCGTGGGNPNWYGAGGWSYHEGDAADSRMTKEAKKRGYAMTSRSRPLNKQDIDEFDYIICMEDKNKTAVLEAAEAWGGAPCRDLAKQKISMMTNYCKTFKDATRVPDPWYEG--GFDHVLDLLEDACD 166          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|1214713078|gb|OWZ23986.1| (Protein tyrosine phosphatase [Phytophthora megakarya])

HSP 1 Score: 204.142 bits (518), Expect = 1.310e-62
Identity = 105/174 (60.34%), Postives = 121/174 (69.54%), Query Frame = 0
Query:   69 SVLFVCLGNICRSPTAEAVFKSVVEREGKSSHI-HIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKT---QTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACDVSKLQVVQK 238
            SVLFVCLGNICRSP  EAV K +V +   S  I  IDSCGTGGGNP WY  GGWSYHEGD ADSRM   A KRG  +TSRSRPL  +DID FDF+ICM+  NK+AV+EAA+ WG       A +KI +MT+YC   K A  VPDP+Y G  GF+ VLDLL+DACD     +V K
Sbjct:    3 SVLFVCLGNICRSPAGEAVLKGIVTKNAASDLIPTIDSCGTGGGNPNWYGAGGWSYHEGDAADSRMTKEAKKRGYVMTSRSRPLTQKDIDEFDFIICMESKNKAAVLEAAEAWGGASCRDLADQKISMMTDYCKFFKDANRVPDPWYEG--GFDHVLDLLEDACDGLYELIVNK 174          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|1173945388|gb|OQR94018.1| (hypothetical protein THRCLA_08273 [Thraustotheca clavata])

HSP 1 Score: 203.371 bits (516), Expect = 2.306e-62
Identity = 98/162 (60.49%), Postives = 117/162 (72.22%), Query Frame = 0
Query:   70 VLFVCLGNICRSPTAEAVFKSVVEREGKSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGK--TQTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229
            VLFVCLGNICRSP AE VFK+VV ++  S+   IDSCGTGGG  GWY+  GWSYHEGD ADSRM+  A KRG  +TS+SRPL  ED+  FD +ICMD  N  AV+EAA +WG    Q A  K+  M +YC +NKGA  VPDP+Y G  GF+ VLDLL+DAC+
Sbjct:    5 VLFVCLGNICRSPAAEGVFKAVVAKDNASAKYDIDSCGTGGGASGWYKPNGWSYHEGDSADSRMKKEAKKRGYHLTSKSRPLNPEDLHRFDHIICMDNNNVQAVLEAARFWGAEYEQLAKAKVSTMCQYCIVNKGATRVPDPWYEG--GFDTVLDLLEDACE 164          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|675176075|ref|XP_008896922.1| (hypothetical protein PPTG_05177 [Phytophthora parasitica INRA-310] >gi|566011489|gb|ETI34400.1| hypothetical protein F443_19064 [Phytophthora parasitica P1569] >gi|568102684|gb|ETN17355.1| hypothetical protein PPTG_05177 [Phytophthora parasitica INRA-310] >gi|570969317|gb|ETP32436.1| hypothetical protein F442_18845 [Phytophthora parasitica P10297])

HSP 1 Score: 201.445 bits (511), Expect = 3.078e-61
Identity = 99/165 (60.00%), Postives = 118/165 (71.52%), Query Frame = 0
Query:   70 VLFVCLGNICRSPTAEAVFKSVVEREG--KSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKT---QTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229
            VLFVCLGNICRSP  EAV K +V ++    ++  HIDSCGTGGGNP WY  GGWSYHEG+ ADSRM   A KRG  +TSRSRPL  +DID FD++ICM+  NK AV+EAA+ WG       A +KI +MT+YC   K A  VPDP+Y G  GF+ VLDLL+DACD
Sbjct:   23 VLFVCLGNICRSPAGEAVLKGIVAKKAGADAASFHIDSCGTGGGNPNWYGAGGWSYHEGEAADSRMTKEAKKRGYIMTSRSRPLNKQDIDEFDYIICMEDKNKEAVLEAAEAWGGVPCRDLADQKISMMTDYCKTIKDATRVPDPWYEG--GFDHVLDLLEDACD 185          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|567949014|gb|ETK74749.1| (hypothetical protein L915_18488 [Phytophthora parasitica] >gi|568007190|gb|ETL81433.1| hypothetical protein L917_18216 [Phytophthora parasitica] >gi|568037032|gb|ETM34629.1| hypothetical protein L914_18301 [Phytophthora parasitica] >gi|570939042|gb|ETP04299.1| hypothetical protein F441_18872 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 201.06 bits (510), Expect = 4.601e-61
Identity = 99/165 (60.00%), Postives = 118/165 (71.52%), Query Frame = 0
Query:   70 VLFVCLGNICRSPTAEAVFKSVVEREG--KSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKT---QTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229
            VLFVCLGNICRSP  EAV K +V ++    ++  HIDSCGTGGGNP WY  GGWSYHEG+ ADSRM   A KRG  +TSRSRPL  +DID FD++ICM+  NK AV+EAA+ WG       A +KI +MT+YC   K A  VPDP+Y G  GF+ VLDLL+DACD
Sbjct:   23 VLFVCLGNICRSPAGEAVLKGIVAKKAGADAASFHIDSCGTGGGNPNWYGVGGWSYHEGEAADSRMTKEAKKRGYIMTSRSRPLNKQDIDEFDYIICMEDKNKEAVLEAAEAWGGVPCRDLADQKISMMTDYCKTIKDATRVPDPWYEG--GFDHVLDLLEDACD 185          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|301119299|ref|XP_002907377.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105889|gb|EEY63941.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 200.29 bits (508), Expect = 4.897e-61
Identity = 102/166 (61.45%), Postives = 118/166 (71.08%), Query Frame = 0
Query:   69 SVLFVCLGNICRSPTAEAVFKSVV-EREG-KSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKT---QTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229
            SVLFVCLGNICRSP  EAV K +V  R G  +S  HIDSCGTGGGNP WY  GGWSYHEGD ADSRM   A KRG  +TSRSRPL  +DID  D++ICM+  NK+A++EAAD WG       A +KI +MT+YC   K    VPDP+Y G  GF+ VLDLL+DACD
Sbjct:    3 SVLFVCLGNICRSPAGEAVLKGIVANRAGADASSFHIDSCGTGGGNPNWYGAGGWSYHEGDAADSRMTKEAKKRGYVMTSRSRPLNKQDIDELDYIICMEDKNKAAMLEAADAWGGAPCRDLAKQKISMMTDYCKNFKDTTRVPDPWYEG--GFDHVLDLLEDACD 166          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|570315243|gb|ETO63191.1| (hypothetical protein F444_19016 [Phytophthora parasitica P1976])

HSP 1 Score: 199.519 bits (506), Expect = 1.952e-60
Identity = 98/165 (59.39%), Postives = 118/165 (71.52%), Query Frame = 0
Query:   70 VLFVCLGNICRSPTAEAVFKSVVEREG--KSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKT---QTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229
            VLFVCLGNICRSP  EAV K +V ++    ++  HIDSCGTGGGNP WY  GGWSYHEG+ ADSRM   A KRG  +TSRSRPL  +DID FD++ICM+  NK AV+EAA+ WG       A +KI +MT+YC   K A  VPDP+Y G  GF+ VLDLL+DAC+
Sbjct:   23 VLFVCLGNICRSPAGEAVLKGIVAKKAGADAASFHIDSCGTGGGNPNWYGVGGWSYHEGEAADSRMTKEAKKRGYIMTSRSRPLNKQDIDEFDYIICMEDKNKEAVLEAAEAWGGVPCRDLADQKISMMTDYCKTIKDATRVPDPWYEG--GFDHVLDLLEDACN 185          
BLAST of EWM23369.1 vs. NCBI_GenBank
Match: gi|970642164|gb|KUF83944.1| (hypothetical protein AM587_10009428 [Phytophthora nicotianae] >gi|970656644|gb|KUF94630.1| hypothetical protein AM587_10012205 [Phytophthora nicotianae] >gi|970657200|gb|KUF95116.1| 6-hydroxy-D-nicotine oxidase [Phytophthora nicotianae])

HSP 1 Score: 197.978 bits (502), Expect = 3.391e-60
Identity = 98/165 (59.39%), Postives = 117/165 (70.91%), Query Frame = 0
Query:   70 VLFVCLGNICRSPTAEAVFKSVVEREG--KSSHIHIDSCGTGGGNPGWYQKGGWSYHEGDMADSRMRAAASKRGIDITSRSRPLKAEDIDFFDFLICMDGANKSAVMEAADYWGKT---QTAAKKIRLMTEYCTINKGARTVPDPYYGGADGFEKVLDLLQDACD 229
            VLFVCLGNICRSP  EAV   +V ++    ++  HIDSCGTGGGNP WY  GGWSYHEG+ ADSRM   A KRG  +TSRSRPL  +DID FD++ICM+  NK AV+EAA+ WG       A +KI +MT+YC   K A  VPDP+Y G  GF+ VLDLL+DACD
Sbjct:    4 VLFVCLGNICRSPAGEAVLMGIVAKKAGADAASFHIDSCGTGGGNPNWYGAGGWSYHEGEAADSRMTKEAKKRGYIMTSRSRPLNKQDIDEFDYIICMEDKNKEAVLEAAEAWGGVPCRDLADQKISMMTDYCKTIKDATRVPDPWYEG--GFDHVLDLLEDACD 166          
The following BLAST results are available for this feature:
BLAST of EWM23369.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104377|gb|EWM23369.1|0.000e+0100.00protein tyrosine phosphatase [Nannochloropsis gadi... [more]
gi|299116693|emb|CBN74838.1|2.248e-6457.65Protein tyrosine phosphatase [Ectocarpus siliculos... [more]
gi|695383646|ref|XP_009517773.1|4.972e-6361.45hypothetical protein PHYSODRAFT_471431 [Phytophtho... [more]
gi|1214713078|gb|OWZ23986.1|1.310e-6260.34Protein tyrosine phosphatase [Phytophthora megakar... [more]
gi|1173945388|gb|OQR94018.1|2.306e-6260.49hypothetical protein THRCLA_08273 [Thraustotheca c... [more]
gi|675176075|ref|XP_008896922.1|3.078e-6160.00hypothetical protein PPTG_05177 [Phytophthora para... [more]
gi|567949014|gb|ETK74749.1|4.601e-6160.00hypothetical protein L915_18488 [Phytophthora para... [more]
gi|301119299|ref|XP_002907377.1|4.897e-6161.45conserved hypothetical protein [Phytophthora infes... [more]
gi|570315243|gb|ETO63191.1|1.952e-6059.39hypothetical protein F444_19016 [Phytophthora para... [more]
gi|970642164|gb|KUF83944.1|3.391e-6059.39hypothetical protein AM587_10009428 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7335rna7335Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications