rna7325, rna7325 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7325
Unique Name	rna7325
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	216
Alignment location	CM002471.1:332399..335749 -

Link to JBrowse

Properties


Property Name	Value
Product	triacylglycerol lipase
Orig transcript id	gnl\|cribi\|Naga_100057g25.3913.mrna
Orig protein id	gnl\|cribi\|Naga_100057g25.3913
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:332399..335749 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g25	gene7090	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23354.1	cds7308	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7325	rna7325-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:332399..335749-
coding sequence from alignment at CM002471.1:332399..335749-

mRNA sequence

>rna7325 ID=rna7325|Name=rna7325|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGCATGACCAGAGACCATTATTTTATCCAACCTTATGCAAAACCTCATT
GTGGCGTGGAGAAGGCGAAACCCAATGGAAGGGACGTGGAGAGGTCTCAC
TTATTGTAGGAAGCCTTCTGGTAGTGGAATTGTCATTTTTTGTCAATCTT
CGGTTTGTAATTACCCGTCAAAATTGTGATTTGCTCACGCTTTTACGATG
TAGCAGTCATTGGTAG

protein sequence of rna7325

>rna7325-protein ID=rna7325-protein|Name=rna7325|organism=Nannochloropsis gaditana|type=polypeptide|length=1116bp
MQRTRQMHSPRLLLWVLLLAAVGSGAVGWGRLAFAPSLASRPSSWHSRWH
KRRLGPVFWDSGASISPKSRTCMSIAPHGPREASRPGVGSPGGRSPLDFG
PPFQKDGNFLREHSPRLQQDTRQVADSATHRREPREEESPSARAPPSSVS
PPPPQTAAASQRKPFSLSKAVLMGPFAFEAYTDPPRTSGYWQSGRDKNEV
AILHEGFLREAYAGKLRVRVKAVTETRAEAQAVFLKAAGARTEGQGPSGK
EGARAGGSVGNPRAEMLAVSVAMEMGEEFVGSQMVRLERVEREEGGESNV
YVPVRGALAGRETGLGGSVGVAGLEDAGLEAWVPAPRAQMQEGGETLLRF
SLRGKEECSLGVAEVDVADLLGGCGREEGARSWERDLLLTAPAGRGHGVE
GDDRGEDARRRLAEAASGVRVRVEMVFTPLARPSVSAPSALEAPACAEMG
AGADSGLGVSQDARDGGSEEAGAGGGETEKRGREREKGKGREWVGARGCS
RDWRELAEALGGEAVRAADLELLCFLENRVTDTQLKVWRDRAGTGGRKRL
LVAFRGTEFWKVRDLITDMKLLQDPWAVHELDKREGGKEGRKTEVSPFLA
TAQASPQESREQEGSREARWSEEGPQAETGEGRSGTGTAASRSPTPGLDF
YAALATQANRTYMLYNDMDRAVKETFGYVWRNTPFFGALPLSAPASPPPS
FPFSSHAAPQPFSGSSSTNTSPRSDLPLHAPGCPSPPSPAPLLTAPAKSN
EEAITSVLMAVLDRVMGNNPLASSPSLPSSPPSSFFVQPLSGQVRSPSDF
RAAFYGLASDLGRQLFPASPSASPSPAAGDETDDKREKSQKSPCDPDGRG
RGGNGGVETGDQAVLGVVGEEVKSPLLMLPSRFKGVFATLVDETFQLMDS
RSFFPSSPPTLLAPRPPSPADPSVFPEADFRASLLQGLDQVVSGLQKKQI
EQLAAPTTRARTLSSPPSSPAPPLPFPPAWTPPPSAPAPRLGSTQASKKP
ISLSVRACWPSWMRRPWGPWKEGGRRIGRSSSRAILWAGLWPPCVPTTCP
HGTQGSPCPCTILARPASGTRPSPAPTKRATAIATGSSTRTTPSPASLAT
CTRRSSTTSTRARPSS

mRNA from alignment at CM002471.1:332399..335749-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7325 ID=rna7325|Name=rna7325|organism=Nannochloropsis gaditana|type=mRNA|length=3351bp|location=Sequence derived from alignment at CM002471.1:332399..335749- (Nannochloropsis gaditana)
ATGCAAAGGACGAGGCAAATGCATTCCCCCCGTTTGTTACTGTGGGTGCT
CTTGCTAGCGGCGGTAGGCTCCGGTGCGGTCGGCTGGGGCCGCCTGGCCT
TCGCTCCATCACTAGCATCTCGGCCGTCGTCGTGGCACTCGCGCTGGCAC
AAACGGCGGCTCGGTCCTGTTTTCTGGGACAGTGGAGCCAGTATCAGCCC
GAAAAGCAGGACCTGTATGTCGATTGCCCCGCATGGTCCTCGCGAGGCGT
CTCGTCCAGGAGTAGGGTCCCCGGGGGGACGAAGCCCCTTGGATTTTGGC
CCCCCCTTCCAGAAAGATGGAAACTTCCTCCGAGAGCATTCCCCGCGGCT
ACAGCAAGATACTAGGCAGGTTGCGGACAGTGCGACTCACCGACGCGAGC
CACGAGAAGAGGAGTCGCCATCCGCGCGGGCACCTCCCTCCTCAGTCTCA
CCCCCTCCCCCTCAGACCGCCGCCGCCAGCCAGCGGAAACCCTTCTCCCT
CAGCAAAGCCGTCCTCATGGGCCCCTTTGCCTTCGAGGCGTACACCGATC
CCCCCCGTACTTCCGGGTATTGGCAGTCGGGCCGCGACAAGAACGAAGTG
GCCATCCTGCACGAGGGCTTCCTCCGAGAAGCGTACGCCGGGAAGCTGCG
TGTCCGGGTGAAGGCCGTGACCGAGACGAGGGCCGAGGCGCAGGCGGTCT
TTCTTAAGGCGGCGGGCGCTCGGACGGAGGGACAGGGACCGAGTGGGAAG
GAAGGAGCGAGAGCGGGCGGCAGTGTTGGAAATCCGAGGGCCGAGATGCT
TGCGGTGTCGGTGGCGATGGAGATGGGGGAGGAGTTTGTGGGCTCTCAGA
TGGTGAGGCTGGAGCGCGTGGAGAGGGAGGAAGGAGGGGAGAGCAATGTG
TACGTACCTGTCCGGGGGGCCCTAGCCGGGAGGGAGACAGGGCTGGGAGG
AAGCGTGGGCGTGGCGGGGCTTGAGGACGCGGGCTTGGAGGCCTGGGTGC
CGGCGCCGCGGGCCCAGATGCAGGAGGGCGGGGAGACGCTGCTGCGGTTT
TCCTTGAGAGGCAAGGAGGAATGTTCGTTGGGCGTCGCTGAAGTCGACGT
GGCGGACTTGTTGGGGGGCTGTGGGAGGGAGGAAGGGGCCCGGTCCTGGG
AGCGAGACCTGCTCTTGACGGCGCCCGCGGGCAGGGGACACGGGGTGGAG
GGCGATGACCGAGGGGAGGACGCACGGCGGCGGCTGGCAGAGGCGGCTTC
GGGGGTGCGGGTAAGGGTTGAGATGGTGTTCACTCCCTTGGCAAGGCCGT
CGGTCTCGGCACCGTCCGCGTTGGAGGCCCCCGCCTGTGCAGAGATGGGG
GCAGGCGCCGACTCCGGCCTCGGGGTCTCTCAGGACGCGCGGGACGGAGG
AAGCGAGGAGGCGGGGGCCGGGGGAGGGGAGACGGAAAAGCGCGGGCGTG
AGAGGGAGAAGGGGAAAGGGAGGGAGTGGGTGGGCGCCCGAGGGTGTTCC
CGGGACTGGAGGGAGCTGGCGGAGGCCTTGGGAGGGGAGGCGGTGAGGGC
CGCGGACTTGGAGCTTCTGTGCTTCTTGGAGAACCGGGTCACGGACACCC
AGTTGAAAGTGTGGCGGGACCGGGCGGGGACGGGGGGAAGGAAACGCTTG
CTGGTGGCCTTCCGTGGGACGGAGTTCTGGAAGGTGAGGGACCTGATCAC
AGACATGAAGCTGTTGCAGGACCCCTGGGCGGTGCACGAGCTTGACAAGA
GGGAGGGCGGGAAGGAGGGCAGGAAGACGGAGGTGTCGCCTTTCCTGGCA
ACGGCTCAGGCCTCGCCGCAGGAATCGCGGGAGCAGGAGGGATCGCGGGA
GGCGCGGTGGTCGGAGGAGGGGCCGCAGGCAGAGACCGGAGAAGGGAGAA
GCGGCACCGGGACGGCCGCCTCCCGCTCCCCCACACCGGGTCTGGACTTC
TACGCGGCCTTGGCGACCCAGGCGAACCGGACGTACATGCTCTACAACGA
CATGGACCGGGCGGTGAAGGAGACGTTCGGCTATGTGTGGAGGAACACCC
CCTTCTTCGGGGCCCTTCCTCTCTCCGCCCCTGCCTCCCCTCCCCCCTCC
TTCCCTTTTTCCTCCCATGCTGCCCCGCAGCCCTTCTCCGGGTCGTCTTC
GACCAATACCTCTCCCCGTTCCGACCTCCCTCTCCACGCGCCCGGATGCC
CCTCCCCCCCTTCTCCCGCCCCCCTTCTCACGGCACCCGCCAAGAGCAAC
GAGGAGGCGATCACGAGCGTCCTCATGGCTGTCCTCGACCGAGTGATGGG
CAACAATCCTCTCGCCTCCTCCCCCTCCCTCCCGTCCTCGCCCCCCTCCT
CCTTCTTCGTCCAGCCCCTGTCAGGACAGGTGAGGAGCCCTTCCGACTTC
CGGGCAGCCTTCTACGGCCTGGCCTCGGACCTGGGGCGGCAGCTCTTTCC
CGCCTCTCCCTCGGCCTCACCCTCCCCGGCTGCGGGCGACGAGACGGACG
ACAAGAGGGAAAAGTCCCAGAAGAGTCCCTGCGATCCGGACGGGCGGGGG
AGGGGAGGGAATGGAGGAGTCGAGACGGGGGACCAGGCGGTCCTGGGCGT
AGTGGGGGAAGAGGTCAAGAGTCCGCTTCTCATGCTCCCGTCCCGCTTCA
AGGGCGTCTTCGCCACGCTCGTGGACGAAACCTTCCAGCTCATGGACAGC
CGCAGCTTCTTCCCCTCCTCCCCCCCCACGCTCCTGGCCCCCCGCCCTCC
CTCCCCCGCCGACCCCTCCGTCTTCCCAGAGGCAGACTTCCGTGCCTCTC
TCCTGCAGGGTCTGGACCAGGTCGTCAGCGGCCTGCAGAAGAAGCAGATC
GAGCAGTTGGCCGCCCCCACAACGCGCGCCCGCACCCTGTCTTCCCCCCC
TTCCTCACCTGCCCCCCCCCTTCCTTTCCCCCCCGCCTGGACGCCGCCTC
CTTCGGCGCCAGCGCCGAGGCTCGGGTCCACGCAGGCTTCAAAGAAGCCT
ATCTCTCTGTCCGTCCGCGCCTGCTGGCCCTCCTGGATGCGGCGACCCTG
GGGGCCTTGGAAGGAGGGCGGGCGGAGGATTGGGAGATCCTCCTCACGGG
CCATTCTCTGGGCGGGGCTTTGGCCTCCCTGTGTGCCCACGACTTGTCCT
CACGGTACGCAGGGCTCTCCCTGTCCATGTACAATTTTGGCACGCCCCGC
ATCGGGAACTCGGCCTTCGCCCGCGCCTACGAAGAGAGCAACGGCGATAG
CTACCGGCTCGTCAACGAGAACGACGCCTTCGCCCGCTTCCCTCGCAACC
TGCACCCGACGCTCTTCAACTACAAGCACGCGGGCACGACCGTCCTCTTG
A

Coding sequence (CDS) from alignment at CM002471.1:332399..335749-

>rna7325 ID=rna7325|Name=rna7325|organism=Nannochloropsis gaditana|type=CDS|length=3351bp|location=Sequence derived from alignment at CM002471.1:332399..335749- (Nannochloropsis gaditana)
ATGCAAAGGACGAGGCAAATGCATTCCCCCCGTTTGTTACTGTGGGTGCT
CTTGCTAGCGGCGGTAGGCTCCGGTGCGGTCGGCTGGGGCCGCCTGGCCT
TCGCTCCATCACTAGCATCTCGGCCGTCGTCGTGGCACTCGCGCTGGCAC
AAACGGCGGCTCGGTCCTGTTTTCTGGGACAGTGGAGCCAGTATCAGCCC
GAAAAGCAGGACCTGTATGTCGATTGCCCCGCATGGTCCTCGCGAGGCGT
CTCGTCCAGGAGTAGGGTCCCCGGGGGGACGAAGCCCCTTGGATTTTGGC
CCCCCCTTCCAGAAAGATGGAAACTTCCTCCGAGAGCATTCCCCGCGGCT
ACAGCAAGATACTAGGCAGGTTGCGGACAGTGCGACTCACCGACGCGAGC
CACGAGAAGAGGAGTCGCCATCCGCGCGGGCACCTCCCTCCTCAGTCTCA
CCCCCTCCCCCTCAGACCGCCGCCGCCAGCCAGCGGAAACCCTTCTCCCT
CAGCAAAGCCGTCCTCATGGGCCCCTTTGCCTTCGAGGCGTACACCGATC
CCCCCCGTACTTCCGGGTATTGGCAGTCGGGCCGCGACAAGAACGAAGTG
GCCATCCTGCACGAGGGCTTCCTCCGAGAAGCGTACGCCGGGAAGCTGCG
TGTCCGGGTGAAGGCCGTGACCGAGACGAGGGCCGAGGCGCAGGCGGTCT
TTCTTAAGGCGGCGGGCGCTCGGACGGAGGGACAGGGACCGAGTGGGAAG
GAAGGAGCGAGAGCGGGCGGCAGTGTTGGAAATCCGAGGGCCGAGATGCT
TGCGGTGTCGGTGGCGATGGAGATGGGGGAGGAGTTTGTGGGCTCTCAGA
TGGTGAGGCTGGAGCGCGTGGAGAGGGAGGAAGGAGGGGAGAGCAATGTG
TACGTACCTGTCCGGGGGGCCCTAGCCGGGAGGGAGACAGGGCTGGGAGG
AAGCGTGGGCGTGGCGGGGCTTGAGGACGCGGGCTTGGAGGCCTGGGTGC
CGGCGCCGCGGGCCCAGATGCAGGAGGGCGGGGAGACGCTGCTGCGGTTT
TCCTTGAGAGGCAAGGAGGAATGTTCGTTGGGCGTCGCTGAAGTCGACGT
GGCGGACTTGTTGGGGGGCTGTGGGAGGGAGGAAGGGGCCCGGTCCTGGG
AGCGAGACCTGCTCTTGACGGCGCCCGCGGGCAGGGGACACGGGGTGGAG
GGCGATGACCGAGGGGAGGACGCACGGCGGCGGCTGGCAGAGGCGGCTTC
GGGGGTGCGGGTAAGGGTTGAGATGGTGTTCACTCCCTTGGCAAGGCCGT
CGGTCTCGGCACCGTCCGCGTTGGAGGCCCCCGCCTGTGCAGAGATGGGG
GCAGGCGCCGACTCCGGCCTCGGGGTCTCTCAGGACGCGCGGGACGGAGG
AAGCGAGGAGGCGGGGGCCGGGGGAGGGGAGACGGAAAAGCGCGGGCGTG
AGAGGGAGAAGGGGAAAGGGAGGGAGTGGGTGGGCGCCCGAGGGTGTTCC
CGGGACTGGAGGGAGCTGGCGGAGGCCTTGGGAGGGGAGGCGGTGAGGGC
CGCGGACTTGGAGCTTCTGTGCTTCTTGGAGAACCGGGTCACGGACACCC
AGTTGAAAGTGTGGCGGGACCGGGCGGGGACGGGGGGAAGGAAACGCTTG
CTGGTGGCCTTCCGTGGGACGGAGTTCTGGAAGGTGAGGGACCTGATCAC
AGACATGAAGCTGTTGCAGGACCCCTGGGCGGTGCACGAGCTTGACAAGA
GGGAGGGCGGGAAGGAGGGCAGGAAGACGGAGGTGTCGCCTTTCCTGGCA
ACGGCTCAGGCCTCGCCGCAGGAATCGCGGGAGCAGGAGGGATCGCGGGA
GGCGCGGTGGTCGGAGGAGGGGCCGCAGGCAGAGACCGGAGAAGGGAGAA
GCGGCACCGGGACGGCCGCCTCCCGCTCCCCCACACCGGGTCTGGACTTC
TACGCGGCCTTGGCGACCCAGGCGAACCGGACGTACATGCTCTACAACGA
CATGGACCGGGCGGTGAAGGAGACGTTCGGCTATGTGTGGAGGAACACCC
CCTTCTTCGGGGCCCTTCCTCTCTCCGCCCCTGCCTCCCCTCCCCCCTCC
TTCCCTTTTTCCTCCCATGCTGCCCCGCAGCCCTTCTCCGGGTCGTCTTC
GACCAATACCTCTCCCCGTTCCGACCTCCCTCTCCACGCGCCCGGATGCC
CCTCCCCCCCTTCTCCCGCCCCCCTTCTCACGGCACCCGCCAAGAGCAAC
GAGGAGGCGATCACGAGCGTCCTCATGGCTGTCCTCGACCGAGTGATGGG
CAACAATCCTCTCGCCTCCTCCCCCTCCCTCCCGTCCTCGCCCCCCTCCT
CCTTCTTCGTCCAGCCCCTGTCAGGACAGGTGAGGAGCCCTTCCGACTTC
CGGGCAGCCTTCTACGGCCTGGCCTCGGACCTGGGGCGGCAGCTCTTTCC
CGCCTCTCCCTCGGCCTCACCCTCCCCGGCTGCGGGCGACGAGACGGACG
ACAAGAGGGAAAAGTCCCAGAAGAGTCCCTGCGATCCGGACGGGCGGGGG
AGGGGAGGGAATGGAGGAGTCGAGACGGGGGACCAGGCGGTCCTGGGCGT
AGTGGGGGAAGAGGTCAAGAGTCCGCTTCTCATGCTCCCGTCCCGCTTCA
AGGGCGTCTTCGCCACGCTCGTGGACGAAACCTTCCAGCTCATGGACAGC
CGCAGCTTCTTCCCCTCCTCCCCCCCCACGCTCCTGGCCCCCCGCCCTCC
CTCCCCCGCCGACCCCTCCGTCTTCCCAGAGGCAGACTTCCGTGCCTCTC
TCCTGCAGGGTCTGGACCAGGTCGTCAGCGGCCTGCAGAAGAAGCAGATC
GAGCAGTTGGCCGCCCCCACAACGCGCGCCCGCACCCTGTCTTCCCCCCC
TTCCTCACCTGCCCCCCCCCTTCCTTTCCCCCCCGCCTGGACGCCGCCTC
CTTCGGCGCCAGCGCCGAGGCTCGGGTCCACGCAGGCTTCAAAGAAGCCT
ATCTCTCTGTCCGTCCGCGCCTGCTGGCCCTCCTGGATGCGGCGACCCTG
GGGGCCTTGGAAGGAGGGCGGGCGGAGGATTGGGAGATCCTCCTCACGGG
CCATTCTCTGGGCGGGGCTTTGGCCTCCCTGTGTGCCCACGACTTGTCCT
CACGGTACGCAGGGCTCTCCCTGTCCATGTACAATTTTGGCACGCCCCGC
ATCGGGAACTCGGCCTTCGCCCGCGCCTACGAAGAGAGCAACGGCGATAG
CTACCGGCTCGTCAACGAGAACGACGCCTTCGCCCGCTTCCCTCGCAACC
TGCACCCGACGCTCTTCAACTACAAGCACGCGGGCACGACCGTCCTCTTG
A

Synonyms

Publications