rna7320, rna7320 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7320
Unique Name	rna7320
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1393
Alignment location	CM002471.1:319531..321649 -

Link to JBrowse

Properties


Property Name	Value
Product	WD40 repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100057g30.3927.mrna
Orig protein id	gnl\|cribi\|Naga_100057g30.3927
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:319531..321649 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g30	gene7085	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23368.1	cds7303	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7320	rna7320-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:319531..321649-
coding sequence from alignment at CM002471.1:319531..321649-

mRNA sequence

>rna7320 ID=rna7320|Name=rna7320|organism=Nannochloropsis gaditana|type=mRNA|length=1393bp
AGGTAATGGAACGTACTTGTGTTCGATGGAAAGCTCGGATCGGGTGAAGG
CCTTTCGTCAGTGGAGGGGATATCAACAGGACATCGCATATCATGGGACT
CGTGTGGCAAAATTATGACCGGACAAAACCTTATCTTTCGTACCTTTACA
TTTATAATCTTGCAGAAAGTTAATGCTGACGAAGTGATCAATACTGGTGG
TCCTTAATCTCGCCCGCCCCCGCTTCTAGCCTCCCCACCCCCTGATTTTT
ATCCTAAGCAAATGGCGGCCACACGCATCGAAGCTTACAGAGTGGAGGCG
GATCAACTCTATGAATCGTACCGATCACTGACCCTGGCTGAGGTTAAGAC
CGTGGTGGAACATTTGAGAGAAAAAATGCGCATACATATTGTCAAGATGG
ACGTGGAGGAAATGGTGTTTGACTTGATAGGGGCAGATGCTTCATTTGCA
AATGCCTTGCGACGGATACTTCTTGCGGAAGTGCCTTCCATGGCCATCGA
GATAGTACATGTCTTCGCTAACTCCTCCATCCTCCATGACGAAGTCCTCG
CGCACCGACTGGGTTTAATCCCTATTTTGGCTGATCCCGCCCACTTCGAG
GATATGCTCCCAGGTCCAGCTGCTGAGGCGAATGAGCACAACACTTTGGT
TTTCGAGCTCGACGCGGCCTTTGTATTGCCAAAGGGTGAGACAGGGCGGC
AAAAGGACAGCAGCAACGGTATCAATACCGGTGACGCGTCGACATTGAAG
GCACCGACTCGGAATGTCTACGCAAAAGACCTGGTCTGGCGGCCCATGGG
GGAACAAGAGACGAGGCTGGCCGAAAGAGTCCCCCAAGTGGCGCACCCCG
ACATCTTAATTGCAAAGTTGAAGCCTGGACAACGCATCAAAGTGGAGGGC
TGGTGTCGGAAAGGGGTTGGGAAGGACCACGCGAAGTACTCGCCAGTTGG
GACCGCGAGCTACCGCCTCTTGCCCTCCATCGACTTCGTGGAGCCCGTCC
TGGGAGAGGAGGCGGACAGGCTGGTGGAGCTATGTCCTATGGGCGTCTTT
GACATCGAGGATTTGGGCAAAGGAGGGGCAAGGGGGGCAGGGAGGAAGGC
CGTCGTGGCTCGACCGCGGGATTGCTCTATGTGTCGGGAGTGTGTCCGAG
AGGGGCCGGGTGTGGGGCGCGTCCGGTTGAAGCGCGTGGCCGATCATTTC
ATCTTCAGCATCGAATCCGTTGGCACGCTGGCGCCGGACAGGGTGCTGAA
GGATGCTGTGCGGGTCTTGCGCGAAAAGTGCACGTCTTTGCTGGAAGCGA
TCGAGGCAGAGGGGAGGGGGGAAGGAGGGGGAGGGAAGGGATGAAGATGC
TTGATACGGAATGAAGAAATGTTAGCGCTGTGGCTGCCAGGTC

protein sequence of rna7320

>rna7320-protein ID=rna7320-protein|Name=rna7320|organism=Nannochloropsis gaditana|type=polypeptide|length=512bp
MDQDGQNRTQETVLEGEDGPLMILAEDVLEEFEVDDEAPPLESEDESEDE
SEGIEEHEGNIKLPSGMRLVAEYANGDMEVLGEEGEAGLPTSVADMAVLS
FRGHKGPIYAVAINPRDSRSMLTGGGDDRAFFWETTAAAPSVNTSTSMPG
LGAVKESEDHGESVNAVGYSHDGSLAATGAYSGKVLVWDAKTRGLLQTLE
GPEDVEWLQWHPKGNLLLAGSKDGTVWMWLAVTGECMRVFSGHEDAVTVG
MFTSDGKLVVSGSMDGSVRVWGPKAGVCRHVFSGYAFHEGPVTALASHPS
DGALLLSGGMDGTARLLHAAGKRVLASMVHSEPTAVGNGGGGASVNGRGK
EGGKSEGGVAPMEEDGTGPGTEEGVAGEEVHEGNYSVETVGFSSVLNWCA
TGGMDGTMKIWDLGNFSCRHVCVHPGLPGVTKLQWHASLPLIYTAATDGV
LRLWDARSGALLQAMTGHEDMILDFAVHSADGHMDVVLTGSDDGTAKVFW
VDVQRYLQQSCS

mRNA from alignment at CM002471.1:319531..321649-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7320 ID=rna7320|Name=rna7320|organism=Nannochloropsis gaditana|type=mRNA|length=2119bp|location=Sequence derived from alignment at CM002471.1:319531..321649- (Nannochloropsis gaditana)
GCACATTTGTGACGAATTCAACAGTCATGTTTTCCTGTTCACGCGGAGTG
AGTATAGGCTGTCCTTGCCGGGGTAAAGCAGAGGATTTTATGGCTGACTG
GATTGCGTGGCTTCAGCCCTTTGTTTTCACTCATCGGCACCCCCCCATAA
ATTTTCTTCCAGAATCATGGACCAAGATGGACAAAATAGAACGCAAGAAA
CGGTATTGGAGGGTGAGGATGGCCCTTTGATGATCTTGGCGGAAGACGTG
TTGGAAGAGTTTGAGGTGGACGACGAGGCCCCTCCCCTTGAAAGTGAAGA
CGAAAGTGAAGACGAAAGCGAGGGGATAGAAGAACATGAAGGTAATATCA
AGCTTCCTTCAGGCATGCGGCTGGTAGCAGAATATGCCAACGGGGACATG
GAGGTGCTGGGAGAGGAGGGGGAGGCGGGACTGCCGACGTCGGTGGCGGA
CATGGCCGTTCTCAGCTTTCGTGGGCATAAGGGTCCGATATACGCAGTGG
CTATCAACCCACGGGATTCTCGGAGCATGCTGACAGGGGGGGGAGACGAC
CGTGCTTTTTTCTGGGAGACTACGGCCGCGGCACCCTCTGTCAATACTTC
CACGTCCATGCCTGGCTTGGGTGCGGTGAAGGAGTCAGAGGACCACGGAG
AGAGCGTCAATGCGGTAGGCTACAGCCACGACGGCAGCTTGGCTGCCACG
GGCGCGTACAGTGGGAAGGTGCTGGTGTGGGACGCGAAGACGCGGGGACT
GCTACAGACTCTCGAAGGCCCAGAGGACGTGGAGTGGCTCCAGTGGCACC
CTAAGGGGAACCTCCTGTTGGCAGGAAGCAAGGACGGGACGGTCTGGATG
TGGCTGGCCGTGACAGGAGAGTGCATGCGGGTCTTCAGCGGGCACGAGGA
CGCGGTGACCGTGGGCATGTTCACCTCAGACGGGAAGCTCGTCGTCTCCG
GCTCCATGGACGGGTCGGTGCGAGTCTGGGGCCCCAAGGCGGGCGTGTGC
CGGCACGTCTTCTCCGGGTATGCTTTCCACGAGGGGCCTGTCACGGCCCT
GGCCTCGCATCCCAGCGACGGGGCGCTGCTTCTGTCGGGCGGGATGGACG
GGACGGCCCGCTTGCTGCATGCGGCGGGCAAGCGGGTACTGGCCTCTATG
GTGCACAGCGAGCCGACGGCAGTAGGGAACGGGGGAGGGGGAGCAAGTGT
GAACGGACGAGGCAAGGAAGGCGGCAAGAGCGAGGGAGGCGTCGCCCCCA
TGGAAGAAGACGGGACGGGCCCGGGGACAGAGGAGGGGGTGGCGGGGGAG
GAGGTGCACGAAGGGAATTATTCCGTGGAGACGGTTGGCTTTTCCAGCGT
GTTGAATTGGTGCGCGACGGGTGGCATGGACGGGACAATGAAGATCTGGG
ACCTGGGGAACTTCAGCTGCCGGCATGTGTGCGTGCACCCGGGCCTGCCC
GGCGTGACGAAGTTGCAGTGGCATGCCTCCTTGCCCCTGATTTACACAGC
AGCGACAGACGGAGTTCTCAGGCTGTGGGATGCGCGGAGCGGTGCATTAC
TGCAGGCCATGACCGGGCACGAGGACATGATATTGGACTTCGCCGTGCAC
TCTGCTGATGGACACATGGATGTCGTCCTGACGGGGTCCGACGATGGAAC
CGCCAAGGTATTCTGGGTGGACGTGCAAAGATACCTGCAGCAGTCTTGTT
CCTAATCATTTTTATTCCAGGCTTCATGTATCGAAATGTGTAGAAATATA
TGTTGCTTGCGTCGCAGGGGACTTTCTTTGCGTTATCATCTTACTTGTTT
TTTCAGGCCCGACCTGTGCAGCTTTCCGTGTCATCTTAAAAAACAATGTA
TCCAACGTAATTCTTGCACTGCAATACCTGGTATATCAGTCATCTGGGAA
GAAGACAGGACTTCCAATTTCTGTTTTCTTTTAAATGGAATGACCCGGCT
ATACATCAACGGAAACGCACAGCGGTAGCATGCATGGCTGAAGCGTTAAA
ATGCAATCATCGCTTATGCTGCCTTCTACAATCTCATTTTCGGGGGTAGG
CTATCGAGAAAGTACTCTGAAGACTCTCATGGAAGTCTAAACAAGCAAGT
CCAAAGGAAGTCACCTTGC

Coding sequence (CDS) from alignment at CM002471.1:319531..321649-

>rna7320 ID=rna7320|Name=rna7320|organism=Nannochloropsis gaditana|type=CDS|length=1539bp|location=Sequence derived from alignment at CM002471.1:319531..321649- (Nannochloropsis gaditana)
ATGGACCAAGATGGACAAAATAGAACGCAAGAAACGGTATTGGAGGGTGA
GGATGGCCCTTTGATGATCTTGGCGGAAGACGTGTTGGAAGAGTTTGAGG
TGGACGACGAGGCCCCTCCCCTTGAAAGTGAAGACGAAAGTGAAGACGAA
AGCGAGGGGATAGAAGAACATGAAGGTAATATCAAGCTTCCTTCAGGCAT
GCGGCTGGTAGCAGAATATGCCAACGGGGACATGGAGGTGCTGGGAGAGG
AGGGGGAGGCGGGACTGCCGACGTCGGTGGCGGACATGGCCGTTCTCAGC
TTTCGTGGGCATAAGGGTCCGATATACGCAGTGGCTATCAACCCACGGGA
TTCTCGGAGCATGCTGACAGGGGGGGGAGACGACCGTGCTTTTTTCTGGG
AGACTACGGCCGCGGCACCCTCTGTCAATACTTCCACGTCCATGCCTGGC
TTGGGTGCGGTGAAGGAGTCAGAGGACCACGGAGAGAGCGTCAATGCGGT
AGGCTACAGCCACGACGGCAGCTTGGCTGCCACGGGCGCGTACAGTGGGA
AGGTGCTGGTGTGGGACGCGAAGACGCGGGGACTGCTACAGACTCTCGAA
GGCCCAGAGGACGTGGAGTGGCTCCAGTGGCACCCTAAGGGGAACCTCCT
GTTGGCAGGAAGCAAGGACGGGACGGTCTGGATGTGGCTGGCCGTGACAG
GAGAGTGCATGCGGGTCTTCAGCGGGCACGAGGACGCGGTGACCGTGGGC
ATGTTCACCTCAGACGGGAAGCTCGTCGTCTCCGGCTCCATGGACGGGTC
GGTGCGAGTCTGGGGCCCCAAGGCGGGCGTGTGCCGGCACGTCTTCTCCG
GGTATGCTTTCCACGAGGGGCCTGTCACGGCCCTGGCCTCGCATCCCAGC
GACGGGGCGCTGCTTCTGTCGGGCGGGATGGACGGGACGGCCCGCTTGCT
GCATGCGGCGGGCAAGCGGGTACTGGCCTCTATGGTGCACAGCGAGCCGA
CGGCAGTAGGGAACGGGGGAGGGGGAGCAAGTGTGAACGGACGAGGCAAG
GAAGGCGGCAAGAGCGAGGGAGGCGTCGCCCCCATGGAAGAAGACGGGAC
GGGCCCGGGGACAGAGGAGGGGGTGGCGGGGGAGGAGGTGCACGAAGGGA
ATTATTCCGTGGAGACGGTTGGCTTTTCCAGCGTGTTGAATTGGTGCGCG
ACGGGTGGCATGGACGGGACAATGAAGATCTGGGACCTGGGGAACTTCAG
CTGCCGGCATGTGTGCGTGCACCCGGGCCTGCCCGGCGTGACGAAGTTGC
AGTGGCATGCCTCCTTGCCCCTGATTTACACAGCAGCGACAGACGGAGTT
CTCAGGCTGTGGGATGCGCGGAGCGGTGCATTACTGCAGGCCATGACCGG
GCACGAGGACATGATATTGGACTTCGCCGTGCACTCTGCTGATGGACACA
TGGATGTCGTCCTGACGGGGTCCGACGATGGAACCGCCAAGGTATTCTGG
GTGGACGTGCAAAGATACCTGCAGCAGTCTTGTTCCTAA

Synonyms

Publications