rna7317, rna7317 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7317
Unique Name	rna7317
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2099
Alignment location	CM002471.1:313288..314598 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100057g33.3931.mrna
Orig protein id	gnl\|cribi\|Naga_100057g33.3931
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:313288..314598 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100057g33	gene7082	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7317	rna7317-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23372.1	cds7300	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:313288..314598+
coding sequence from alignment at CM002471.1:313288..314598+

mRNA sequence

>rna7317 ID=rna7317|Name=rna7317|organism=Nannochloropsis gaditana|type=mRNA|length=2099bp
GAAGGAATACAGGGATAACCTGCGTTTCTACTTATAATGTACAGACTGCA
ATCAACCTGTGTCGGTAGAAAAAGGAGGATTGAGAATTTTTCACAATCTT
TTCGATAGGCCATAATAACAGCTCGGACCGGCGGCTTGTAGCTTCGCTGC
CTAGACGCTATGACCTATTGCAGCACCCAAAAGGACGTCTGTGCATATCA
TAGGGATGTCTAACCGTTCATAGATGGCATCCTTGGCGATATCCTTCCTT
ATTCATTGTAAGAGGATCGAGAGGAGACGGAAACAGAGGCCTGCGTCCAA
GCAGGAAAGACAGAAATCTGACGACTTGATCAGAGCATCATGTTGTTCGA
TACGCACCTCTTGTCACAGGTTTGCCTGTCTCGGGAATACAATTAAGCTT
AGCTTGCCTGCTTATTTTCCTGTTAACGAGGGAACCACCTCCGCGGCACC
CAGCGTCCATCATGGCAGCCGATCCATCGTTAGGAGACTCCTTTATAGAC
CTGACAATCGCACTGGAGCAACTCTGGCAGCAAGTGCGGCGTGAGCTTTC
CAGGGATGGTGTAAAGGAATGGCTTTTAGGCGCTCCGGCACGCTACAAAA
AGTGGTGGCTGCACTTGGTAGAGCATGCTCCTGGCCACGTGGTGGTCGAG
ACAGCCTTGATTCTGTTCATTATATGGTTGATCTTCTTGAGGAAGACCGT
GGACCCGTCCAAGGAGGACAGTTTCTTGTCGGAGAAGGAGATCGACCAGC
TGGTGGAGGAGTGGCAGCCGGAGCCCTTGGTCCCGGGCCCGGACCCGGCC
TGGGATGAGGAGGACGCGCAGGCCTTGGTCGTAGAGGAGGTAGACGGCAC
GCGGGTGGTCGTGAACGGGAAAAAAATGATAAACATGGCGTCCTTCGACT
TCTTGGGTCTGGCCGGTCGAGGCGAAGTCAAGGAGGCGGCCCGCGCCGCC
CTAAACAAGTACGGGTGTGGCTCTTGTGGACCGAGAGGCTTTTACGGCTC
CATCGATGTGCATGTGATGGCCGAGCAAGCGATGGCGGCTTTCTTGGGCG
CGGAGGAGGCCATTTCCTATTCTGACGCCGCCTCCTCGGTTTCCTCCACG
CTTCCCGCCTTCGCCAAGAAGGGCGACCTGTTGATCGCGGACGAGGGCGT
GTATGAGCCCATCCAGACGGCCATCAACCTCTCGCGCGCCCAGGTCCGGT
ATTTCCGCCACAACGACATGGAGGACTTGGAGCGCGTCTTGCGGGAGGTG
GCGGAGGAGGACCGGCGACTGGATCGGAACGAGCGAGAACAGCGTCGGTT
CATCGTCGTGGAGGGCCTGTACAAAAACTTCGGGGACCTGTGCCCCCTCC
CCGCCCTCATTGCCCTCAAGCGCCAGTACCGGTACCGCCTCTACCTAGAC
CAGACCTTCTCCTTCGGGTGCTTCGGGACGGCGGGCCGCGGTCTGGCCGA
GCACTTCGGCGTGCCCCTCGCCGACGTCGAGGTCATGTCCGTCTCGATCT
CGCACGCCCTGGGCTCGGTGGGGGGCATGTGCGTGGGCACCTCCGAGGTC
GTGGATCATCAGCGGCTCTCGGGGGCAGGCTACTGCTACTCCGCCTCTGC
CCCGCCCTTCACCTCCTCCGCGGCCATGGCGGCCTTGGCCCTCTTGGAAA
AGGAGCCGGAGTTGGTGACGAAATTGCGCGAAAATGCTGTTTGGCTGGCT
CGGGCGCTGGGGAAAATTCCGGGGCTGGAAGTGAGGAGCCAAGAAATTTC
CCCCGTGCTGCACGTAGGCGTGGCCAAGGCGGTCTCTGACGGATGGACGC
GGGAGGAGGAGGAGCGGGTATTGCAAGCCATAGCGCGGGCATGTGTGGAC
GCCGGGTACGCCGTGGTCACGAGCAAATACACATTGTTGGACGTGGAGGC
TGTGTCGAAAGGAGGGCTCTTGCCGGAGCCCTCGCTGCGGCTGGCGGTGT
CGGCGGTCCACACGCGGGCCGAGCTGGAGGGGGCGGTGGAGGCGATCAGG
AGAAGCGCCGCCGGGGTCCTGAAGAAGCATGCGGGTGGGAGGAAGGGGGG
GTAGGAGGTTGGGCTCGAGAGCCGGCGACGGAAAGAAAAAGGCCGGGGG

protein sequence of rna7317

>rna7317-protein ID=rna7317-protein|Name=rna7317|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MRNKNSLCAVLKFLGLYCSIFLLCLVDVPIGVLGDDVVANDIQDTHETEK
ADFIIDSGYETPLDKKSDMLNLLNEKNAALSALESSINSLQDELKDKVER
LATAEEEIRKLSEKVTELNSKAEEASLHISQLERERTETRDAAAEILRLK
EKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMK
ENSSSLKNLEAEYAQNLIAEKEKTDSMTSQTEKEAAEAAKRIQSLEAELI
KAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTVKTKYSFRTLSSDFVA
WFNKKWERL

mRNA from alignment at CM002471.1:313288..314598+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7317 ID=rna7317|Name=rna7317|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp|location=Sequence derived from alignment at CM002471.1:313288..314598+ (Nannochloropsis gaditana)
AGTACACAAATAAACAGGACAGTAATGAGGAACAAGAACAGTCTATGTGC
CGTTTTGAAATTTTTGGGGTTGTACTGTTCGATCTTTCTGCTCTGCCTTG
TTGACGTACCCATTGGAGTTCTTGGGGATGACGTAGTGGCCAATGATATT
CAAGACACGCACGAAACTGAGAAAGCTGATTTCATTATTGATTCTGGATA
TGAAACGCCATTAGATAAAAAAAGCGACATGCTTAACTTGTTGAACGAAA
AGAACGGTAAGTGCAGATCATGATAGTTGCACGTGCGTGACAAAGCTATC
TGTGAAGTGATTAGGTCATATGGTCTGAACAGAGCAAACGATATTTCTCA
ACTAGCTAAAAGTATTCTACCACTGAATCTCTTCTCACTCTGATCGTGGG
GTTGCATCAAGCCTGGCAATTCACCGTCGATTTctcttgctttcttttca
tACTACACAAGCTGCCCTGTCCGCGTTAGAAAGCTCCATCAACTCCCTGC
AAGATGAGCTGAAAGACAAAGTGGAGCGCTTGGCCACCGCTGAAGAGGAG
ATTCGCAAATTATCTGAAAAGGTGACGGAACTAAACTCAAAGGCAGAGGA
AGCTTCACTGCACATTTCCCAGTTGGAGAGAGAACGGACCGAAACACGCG
ATGCGGCAGCGGAAATCTTGCGTCTGAAAGAGAAAGTCGATGACCTGGAA
GCTAAATTGACGGAAGCAACCAAAGAACGCGGAAATTTagagcaagaaaa
ggaggcgcaAAAAGCtgcttgggaggaggaaaagcagagCTTCCAGGCTC
GAGTAACCGTTCTCGAAGATGAAATGAAGGAAAATAGTTCGTCACTCAAA
AATTTGGAAGCAGAATATGCACAAAATTTAAttgcggagaaagagaaaac
gGATTCCATGACTTCTcagacggagaaggaggcggctgAGGCGGCTAAGA
GGATCCAATCTCTAGAAGCCGAGTTGATTAAGGCACACAGCGAAGCTGCG
ACGGCCCGCCAGAGCTTAGAGGAGCAGCTCAAGACGAAACAAAAAGAAGT
GACCGATACAAAAGCCAAGCTTCGGCGCACTGTGAAGACTAAGTACTCGT
TTCGAACCTTGTCTTCTGACTTTGTCGCGTGGTTCAACAAAAAGTGGGAG
CGTTTGTAAAAAGCTGTCAAGGAAGGTCCTTACCACAGATTAAAGCGTAA
TTTGCAGAAAAACTGCAAAAAGATGAAAAAGGCTTTGTTTCATTCCAGGC
TGTATTCGTTGAACAGAAATTATTAGCTTCTAGCTACTACTACAAAAGAT
ATATTGAACGA

Coding sequence (CDS) from alignment at CM002471.1:313288..314598+

>rna7317 ID=rna7317|Name=rna7317|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002471.1:313288..314598+ (Nannochloropsis gaditana)
ATGAGGAACAAGAACAGTCTATGTGCCGTTTTGAAATTTTTGGGGTTGTA
CTGTTCGATCTTTCTGCTCTGCCTTGTTGACGTACCCATTGGAGTTCTTG
GGGATGACGTAGTGGCCAATGATATTCAAGACACGCACGAAACTGAGAAA
GCTGATTTCATTATTGATTCTGGATATGAAACGCCATTAGATAAAAAAAG
CGACATGCTTAACTTGTTGAACGAAAAGAACGCTGCCCTGTCCGCGTTAG
AAAGCTCCATCAACTCCCTGCAAGATGAGCTGAAAGACAAAGTGGAGCGC
TTGGCCACCGCTGAAGAGGAGATTCGCAAATTATCTGAAAAGGTGACGGA
ACTAAACTCAAAGGCAGAGGAAGCTTCACTGCACATTTCCCAGTTGGAGA
GAGAACGGACCGAAACACGCGATGCGGCAGCGGAAATCTTGCGTCTGAAA
GAGAAAGTCGATGACCTGGAAGCTAAATTGACGGAAGCAACCAAAGAACG
CGGAAATTTagagcaagaaaaggaggcgcaAAAAGCtgcttgggaggagg
aaaagcagagCTTCCAGGCTCGAGTAACCGTTCTCGAAGATGAAATGAAG
GAAAATAGTTCGTCACTCAAAAATTTGGAAGCAGAATATGCACAAAATTT
AAttgcggagaaagagaaaacgGATTCCATGACTTCTcagacggagaagg
aggcggctgAGGCGGCTAAGAGGATCCAATCTCTAGAAGCCGAGTTGATT
AAGGCACACAGCGAAGCTGCGACGGCCCGCCAGAGCTTAGAGGAGCAGCT
CAAGACGAAACAAAAAGAAGTGACCGATACAAAAGCCAAGCTTCGGCGCA
CTGTGAAGACTAAGTACTCGTTTCGAACCTTGTCTTCTGACTTTGTCGCG
TGGTTCAACAAAAAGTGGGAGCGTTTGTAAATGAGGAACAAGAACAGTCT
ATGTGCCGTTTTGAAATTTTTGGGGTTGTACTGTTCGATCTTTCTGCTCT
GCCTTGTTGACGTACCCATTGGAGTTCTTGGGGATGACGTAGTGGCCAAT
GATATTCAAGACACGCACGAAACTGAGAAAGCTGATTTCATTATTGATTC
TGGATATGAAACGCCATTAGATAAAAAAAGCGACATGCTTAACTTGTTGA
ACGAAAAGAACGCTGCCCTGTCCGCGTTAGAAAGCTCCATCAACTCCCTG
CAAGATGAGCTGAAAGACAAAGTGGAGCGCTTGGCCACCGCTGAAGAGGA
GATTCGCAAATTATCTGAAAAGGTGACGGAACTAAACTCAAAGGCAGAGG
AAGCTTCACTGCACATTTCCCAGTTGGAGAGAGAACGGACCGAAACACGC
GATGCGGCAGCGGAAATCTTGCGTCTGAAAGAGAAAGTCGATGACCTGGA
AGCTAAATTGACGGAAGCAACCAAAGAACGCGGAAATTTagagcaagaaa
aggaggcgcaAAAAGCtgcttgggaggaggaaaagcagagCTTCCAGGCT
CGAGTAACCGTTCTCGAAGATGAAATGAAGGAAAATAGTTCGTCACTCAA
AAATTTGGAAGCAGAATATGCACAAAATTTAAttgcggagaaagagaaaa
cgGATTCCATGACTTCTcagacggagaaggaggcggctgAGGCGGCTAAG
AGGATCCAATCTCTAGAAGCCGAGTTGATTAAGGCACACAGCGAAGCTGC
GACGGCCCGCCAGAGCTTAGAGGAGCAGCTCAAGACGAAACAAAAAGAAG
TGACCGATACAAAAGCCAAGCTTCGGCGCACTGTGAAGACTAAGTACTCG
TTTCGAACCTTGTCTTCTGACTTTGTCGCGTGGTTCAACAAAAAGTGGGA
GCGTTTGTAA

Synonyms

Publications