EWM23372.1, cds7300 (CDS) Nannochloropsis gaditana

Overview
NameEWM23372.1
Unique Namecds7300
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:313312..313543 +
Alignment locationCM002471.1:313749..314446 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23372.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100057g33.3931.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:313312..313543 +
CM002471.1supercontigCM002471.1:313749..314446 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM23372.1 vs. NCBI_GenBank
Match: gi|585104380|gb|EWM23372.1| (hypothetical protein Naga_100057g33 [Nannochloropsis gaditana])

HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0 
Query:    1 MRNKNSLCAVLKFLGLYCSIFLLCLVDVPIGVLGDDVVANDIQDTHETEKADFIIDSGYETPLDKKSDMLNLLNEKNAALSALESSINSLQDELKDKVERLATAEEEIRKLSEKVTELNSKAEEASLHISQLERERTETRDAAAEILRLKEKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMKENSSSLKNLEAEYAQNLIAEKEKTDSMTSQTEKEAAEAAKRIQSLEAELIKAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTVKTKYSFRTLSSDFVAWFNKKWERL 309
            MRNKNSLCAVLKFLGLYCSIFLLCLVDVPIGVLGDDVVANDIQDTHETEKADFIIDSGYETPLDKKSDMLNLLNEKNAALSALESSINSLQDELKDKVERLATAEEEIRKLSEKVTELNSKAEEASLHISQLERERTETRDAAAEILRLKEKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMKENSSSLKNLEAEYAQNLIAEKEKTDSMTSQTEKEAAEAAKRIQSLEAELIKAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTVKTKYSFRTLSSDFVAWFNKKWERL
Sbjct:    1 MRNKNSLCAVLKFLGLYCSIFLLCLVDVPIGVLGDDVVANDIQDTHETEKADFIIDSGYETPLDKKSDMLNLLNEKNAALSALESSINSLQDELKDKVERLATAEEEIRKLSEKVTELNSKAEEASLHISQLERERTETRDAAAEILRLKEKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMKENSSSLKNLEAEYAQNLIAEKEKTDSMTSQTEKEAAEAAKRIQSLEAELIKAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTVKTKYSFRTLSSDFVAWFNKKWERL 309
[Close]
BLAST of EWM23372.1 vs. NCBI_GenBank
Match: gi|553180074|ref|XP_005853341.1| (egf-like protein [Nannochloropsis gaditana CCMP526] >gi|422295720|gb|EKU23019.1| egf-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 450.284 bits (1157), Expect = 3.121e-158
Identity = 237/241 (98.34%), Postives = 239/241 (99.17%), Query Frame = 0 
Query:   69 MLNLLNEKNAALSALESSINSLQDELKDKVERLATAEEEIRKLSEKVTELNSKAEEASLHISQLERERTETRDAAAEILRLKEKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMKENSSSLKNLEAEYAQNLIAEKEKTDSMTSQTEKEAAEAAKRIQSLEAELIKAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTVKTKYSFRTLSSDFVAWFNKKWERL 309
            MLNLLNEKNAALSALESSINSLQDELKDKVERLATAEEEIRKLSEKVTELNSKAEEASLH SQLERERTETRDAAAEILRLKEKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMKENS SLKNLEAEYAQNLIAEKEKTDSMTSQTEKEAAEAAKRIQSLEAELIKAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTV+TKYSFRTLSSDFVAWFNKKW+RL
Sbjct:    1 MLNLLNEKNAALSALESSINSLQDELKDKVERLATAEEEIRKLSEKVTELNSKAEEASLHSSQLERERTETRDAAAEILRLKEKVDDLEAKLTEATKERGNLEQEKEAQKAAWEEEKQSFQARVTVLEDEMKENSLSLKNLEAEYAQNLIAEKEKTDSMTSQTEKEAAEAAKRIQSLEAELIKAHSEAATARQSLEEQLKTKQKEVTDTKAKLRRTVRTKYSFRTLSSDFVAWFNKKWKRL 241
The following BLAST results are available for this feature:
BLAST of EWM23372.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585104380|gb|EWM23372.1|0.000e+0100.00hypothetical protein Naga_100057g33 [Nannochlorops... [more]
gi|553180074|ref|XP_005853341.1|3.121e-15898.34egf-like protein [Nannochloropsis gaditana CCMP526... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7317rna7317Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications