rna7315, rna7315 (mRNA) Nannochloropsis gaditana

Overview
Namerna7315
Unique Namerna7315
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length811
Alignment locationCM002471.1:307608..308840 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100472g1.10257.mrna
Orig protein idgnl|cribi|Naga_100472g1.10257
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:307608..308840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100472g1gene7080Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7315rna7315-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23375.1cds7298Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7315 ID=rna7315|Name=rna7315|organism=Nannochloropsis gaditana|type=mRNA|length=811bp
ATGGCAATGCCAAGTACAAGTCTGGAACATTCAATGGGCCTGAAACCTGG
CGAAGTCGCGACTGGGACCACGATCATGGCCGTCGAATTTGACGGAGGCG
TGGTCCTAGGAGCCGATTCCCGCACATCCACAGGAACTTACGTGGCCAAT
CGTGTGAGTGACAAGCTAACCGCCTTGCACCACCACATCTACTGCTGCCG
GTCCGGTTCTGCCGCCGACACGCAGGCCCTGGCCGACTACGTCCGGTACT
TCCTAGCTTCCCATGCCATTGACCTGGGACGTACTCCTGCGGTTTACACC
GCGGCGAAGCTCATGTCGACCCTGATATACAGAAACAAGGATAACTTGCT
AGCGGGTGTGATAATCGGGGGATGGGACCCGAAGGACGGGGGCCAGGTCT
ACACGGTCACGCTGGGGGGGACGCTGCAGCGACAGAAATTCTCCATCGGC
GGCTCGGGGTCCACCTACATTTACGGCCACGTGGACGAGGCCTTCAAGGA
GAACATGACCCGCGAGGAATGCCAGAACTTTGTCAAGAAAGCCATCTCAC
ACGCCATGGCGAGGGACGGATCGTCGGGAGGAGTCATCCGCATGGTCACT
ATTGACAAGTCGGGGGTCTCCAGGGAGTTCATCCCAGGTGATAAGCTGCC
GTACGGGCCCTAGGCGGGAGGGCTGGAAGGAGGGGGGGGGGCGGGGTAGG
GGGGGGGTGTATCAAGGGAGGAATTCTGGGAGAAAAGCCGAGCATAGGGA
CGGCACAACATGAGTTCCGAAAGAAGAAGTAAGAATGAACAAGACGGAAG
CTTGGAGACCC
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protein sequence of rna7315

>rna7315-protein ID=rna7315-protein|Name=rna7315|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MSDAQMRTASSTTCSLHGRRKRPRPFPRALTAATAAAYTVLFTFSCPPPT
VHARPSPPPSAASPSNPNGNPWSYYDGPSSYTPGRPNDQPPPPSASRPQR
AGGGYPPYLGDEEEENERRAPGKVRNRRPLSASTAGGSSLPMPREGAAWG
GVGRRRDGRERTEGFRYQAQYLVEEEEETFVEGMEGQGEGQEGPEAGPAD
PVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGL
FLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRR
PFPPVENPWAYVRASPR
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mRNA from alignment at CM002471.1:307608..308840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7315 ID=rna7315|Name=rna7315|organism=Nannochloropsis gaditana|type=mRNA|length=1233bp|location=Sequence derived from alignment at CM002471.1:307608..308840+ (Nannochloropsis gaditana)
GCGTACCGATTGCAGCACCGGGGCGGAATTTGTGGCGAGTAACCCTAGTA
TGTAGACGCATAGAGGATCAAGGGCTCCTTGACCAGAGCAATGAGGGCCA
TCGACGGTCCACTGACAATATGATCGGGGAGGTGTGTCCATGTTGCACAT
AATAAGTCTTGGCCTCACGTACTCATTCTTTTTGTTGCGTCATAGGCCGC
GCAAAAGCCCGGGGTCGGCTTCTGGTCGCTCGTGTCCTGGTCGATCTCCT
CCTACCCCGCCAGAGGTGGCGCTTCCACCATGTCGGATGCGCAAATGcgg
accgcgtcctccaccacctgcagcTTACATGGACGACGGAAGCGGCCACG
ACCTTTCCCACGGGCCCTAACCGCTGCAACAGCGGCTGCTTACACCGTCC
TTTTCActttctcctgccctcctccgaccgtccacgcccggccatcccct
cccccgtctgcTGCGTCCCCCAGCAATCCCAACGGCAATCCATGGTCGTA
TTACGATGGTCCTTCCTCTTACACTCCGGGCCGCCCCAACGATCagcccc
caccgccctcggCTTCCCGACCTCAACGCGCAGGAGGGGGATACCCCCCC
TACCTtggggacgaagaggaagagaatgaGAGGCGGGCCCCGGGCAAAGT
ACGGAACCGGCGCCCCCTTTCCGCGTCCACTGCTGgcggttcctccctcc
ccatgccgcgggagggggcagcgtggggaggggtgggacgccgccgggac
gggagggagaggacagagGGGTTCCGGTACCAGGCTCAgtacctggtgga
ggaggaggaggagacctttgtggagggcatggaggggcagggggagggcc
aaGAGGGCCCAGAGGCAGGCCCGGCCGACCCCGTGGACCTGTACTGTGCC
CGGTGGCAGGGGCGCATGGCGGTGaccctggcggcgggcgtcgcgggggc
gggcctgGGGCTGGGATTGAGCGCCTCGGCCATCCACCGCCCGGCCTCCT
GCGCCCTCGCCGGCCTGGGTCtgggcctcttcctctccctgctcagGAAC
GACTTCGGGGACCTGTTTCGCGCCCTCGGCTTGCTGCTCATCTATCTGGT
GGAGCGTCAAGTGAGCACGGGGACGGCCTACCCTGCCCTCCATCAGCTGC
GCCCTTTGCTTCGACTGGCACCCCGGCGGCCTTTCCCGCCCGTGGAAAAT
CCTTGGGCTTACGTACGGGCGTCGCCGAGGTAA
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Coding sequence (CDS) from alignment at CM002471.1:307608..308840+

>rna7315 ID=rna7315|Name=rna7315|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002471.1:307608..308840+ (Nannochloropsis gaditana)
ATGTCGGATGCGCAAATGcggaccgcgtcctccaccacctgcagcTTACA
TGGACGACGGAAGCGGCCACGACCTTTCCCACGGGCCCTAACCGCTGCAA
CAGCGGCTGCTTACACCGTCCTTTTCActttctcctgccctcctccgacc
gtccacgcccggccatcccctcccccgtctgcTGCGTCCCCCAGCAATCC
CAACGGCAATCCATGGTCGTATTACGATGGTCCTTCCTCTTACACTCCGG
GCCGCCCCAACGATCagcccccaccgccctcggCTTCCCGACCTCAACGC
GCAGGAGGGGGATACCCCCCCTACCTtggggacgaagaggaagagaatga
GAGGCGGGCCCCGGGCAAAGTACGGAACCGGCGCCCCCTTTCCGCGTCCA
CTGCTGgcggttcctccctccccatgccgcgggagggggcagcgtgggga
ggggtgggacgccgccgggacgggagggagaggacagagGGGTTCCGGTA
CCAGGCTCAgtacctggtggaggaggaggaggagacctttgtggagggca
tggaggggcagggggagggccaaGAGGGCCCAGAGGCAGGCCCGGCCGAC
CCCGTGGACCTGTACTGTGCCCGGTGGCAGGGGCGCATGGCGGTGaccct
ggcggcgggcgtcgcgggggcgggcctgGGGCTGGGATTGAGCGCCTCGG
CCATCCACCGCCCGGCCTCCTGCGCCCTCGCCGGCCTGGGTCtgggcctc
ttcctctccctgctcagGAACGACTTCGGGGACCTGTTTCGCGCCCTCGG
CTTGCTGCTCATCTATCTGGTGGAGCGTCAAGTGAGCACGGGGACGGCCT
ACCCTGCCCTCCATCAGCTGCGCCCTTTGCTTCGACTGGCACCCCGGCGG
CCTTTCCCGCCCGTGGAAAATCCTTGGGCTTACGTACGGGCGTCGCCGAG
GTAA
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Synonyms
Publications