EWM23375.1, cds7298 (CDS) Nannochloropsis gaditana

Overview
NameEWM23375.1
Unique Namecds7298
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:307887..308840 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23375.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100472g1.10257.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:307887..308840 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|585104384|gb|EWM23375.1| (hypothetical protein Naga_100472g1 [Nannochloropsis gaditana])

HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query:    1 MSDAQMRTASSTTCSLHGRRKRPRPFPRALTAATAAAYTVLFTFSCPPPTVHARPSPPPSAASPSNPNGNPWSYYDGPSSYTPGRPNDQPPPPSASRPQRAGGGYPPYLGDEEEENERRAPGKVRNRRPLSASTAGGSSLPMPREGAAWGGVGRRRDGRERTEGFRYQAQYLVEEEEETFVEGMEGQGEGQEGPEAGPADPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRASPR 317
            MSDAQMRTASSTTCSLHGRRKRPRPFPRALTAATAAAYTVLFTFSCPPPTVHARPSPPPSAASPSNPNGNPWSYYDGPSSYTPGRPNDQPPPPSASRPQRAGGGYPPYLGDEEEENERRAPGKVRNRRPLSASTAGGSSLPMPREGAAWGGVGRRRDGRERTEGFRYQAQYLVEEEEETFVEGMEGQGEGQEGPEAGPADPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRASPR
Sbjct:    1 MSDAQMRTASSTTCSLHGRRKRPRPFPRALTAATAAAYTVLFTFSCPPPTVHARPSPPPSAASPSNPNGNPWSYYDGPSSYTPGRPNDQPPPPSASRPQRAGGGYPPYLGDEEEENERRAPGKVRNRRPLSASTAGGSSLPMPREGAAWGGVGRRRDGRERTEGFRYQAQYLVEEEEETFVEGMEGQGEGQEGPEAGPADPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRASPR 317          
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|397574065|gb|EJK49009.1| (hypothetical protein THAOC_32153 [Thalassiosira oceanica])

HSP 1 Score: 80.8777 bits (198), Expect = 2.358e-13
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 0
Query:  173 VEEEEETFVEGMEGQGEGQEGPE--AGPA-DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPV---ENPWAY 311
            ++ +E  +V     + +  EG    A P  D V  Y +  +G + V     V GA LG  +  S ++ P   A+A   L L  S LRND+G+L RALGL  +  + R  S    YP +  ++ +LR  PR+PFPPV   ++PW Y
Sbjct:  247 LDSDERYYVYSQRSRRDEDEGERLRASPRRDAVTTYMSGKRGAIKVRFGCVVVGAALGGFIGKSLLNDPKVAAVAFSLLFLVTSFLRNDYGELSRALGLAFVMTLNRTSSVRREYPTMPHIKAMLRQKPRKPFPPVDEGDSPWRY 391          
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|219118021|ref|XP_002179794.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408847|gb|EEC48780.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 80.8777 bits (198), Expect = 2.689e-13
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 0
Query:  200 DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYV 312
            D +  Y +  +G+  + L++G  G  +G  L  S ++RP + ++         + LRN +G+  +ALG+ LI+ V+R       YP    ++ L+  A RR FPP+ENPWAYV
Sbjct:  178 DAIGRYMSTSRGKALLLLSSGTVGGAIGAFLGKSLLNRPFALSIPFFFTFWIAANLRNSYGEFVKALGMTLIFAVQRSRRIRKTYPTFCHVKALIGAAQRREFPPIENPWAYV 290          
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|223992635|ref|XP_002286001.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977316|gb|EED95642.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 78.5666 bits (192), Expect = 1.503e-12
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 0
Query:  200 DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPV---ENPWAY 311
            D V +Y +  +G   V   + V GA LG  +  S ++ P   +     L      LRND+G+L RALGL  +   +R  S    YP L  L+ ++R  PR+PFPPV   ++PW Y
Sbjct:  321 DAVTMYMSTRRGAFKVRFGSVVVGATLGAFIGKSLMNDPFVISFVTASLLFIAGFLRNDYGELSRALGLAFLLTCQRTSSVRKEYPTLVHLKAMIRQGPRKPFPPVDEGDSPWKY 435          
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|1210528405|dbj|GAX12927.1| (hypothetical protein FisN_22Hu260 [Fistulifera solaris])

HSP 1 Score: 67.0106 bits (162), Expect = 9.438e-9
Identity = 48/143 (33.57%), Postives = 69/143 (48.25%), Query Frame = 0
Query:  173 VEEEEETFVEGMEGQGEGQEG--PEAGPA--DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAY 311
            V  EE+  +       E +EG  PE   A  DPV L+ + ++GR+ +  +A   GA L   L     H P + A     +G    LLR  FGD  R+L L +++ ++R       YP    ++  LR  PRRP+PP  NPW Y
Sbjct:   93 VRLEEDGNLGAFGEYSESKEGKVPEYASARRDPVTLFQSTFRGRLLLFASAFSTGALLSAFLLHGWWH-PGALAFT---IGY---LLRGAFGDCVRSLALAMLWTMQRSRRVWKEYPTWRHVKACLRAGPRRPYPPTSNPWNY 228          
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|299116521|emb|CBN74709.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 60.077 bits (144), Expect = 8.273e-7
Identity = 32/59 (54.24%), Postives = 34/59 (57.63%), Query Frame = 0
Query:  256 RNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRA 314
            R  FGDLFRALGL  +  V R       YP L   R  L + PRRPFPP ENPW Y RA
Sbjct:   28 RGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRA 86          
The following BLAST results are available for this feature:
BLAST of EWM23375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585104384|gb|EWM23375.1|0.000e+0100.00hypothetical protein Naga_100472g1 [Nannochloropsi... [more]
gi|397574065|gb|EJK49009.1|2.358e-1334.48hypothetical protein THAOC_32153 [Thalassiosira oc... [more]
gi|219118021|ref|XP_002179794.1|2.689e-1333.63predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223992635|ref|XP_002286001.1|1.503e-1235.65predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210528405|dbj|GAX12927.1|9.438e-933.57hypothetical protein FisN_22Hu260 [Fistulifera sol... [more]
gi|299116521|emb|CBN74709.1|8.273e-754.24conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7315rna7315Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications