EWM23375.1, cds7298 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|585104384|gb|EWM23375.1| (hypothetical protein Naga_100472g1 [Nannochloropsis gaditana]) HSP 1 Score: 628.632 bits (1620), Expect = 0.000e+0 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query: 1 MSDAQMRTASSTTCSLHGRRKRPRPFPRALTAATAAAYTVLFTFSCPPPTVHARPSPPPSAASPSNPNGNPWSYYDGPSSYTPGRPNDQPPPPSASRPQRAGGGYPPYLGDEEEENERRAPGKVRNRRPLSASTAGGSSLPMPREGAAWGGVGRRRDGRERTEGFRYQAQYLVEEEEETFVEGMEGQGEGQEGPEAGPADPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRASPR 317
MSDAQMRTASSTTCSLHGRRKRPRPFPRALTAATAAAYTVLFTFSCPPPTVHARPSPPPSAASPSNPNGNPWSYYDGPSSYTPGRPNDQPPPPSASRPQRAGGGYPPYLGDEEEENERRAPGKVRNRRPLSASTAGGSSLPMPREGAAWGGVGRRRDGRERTEGFRYQAQYLVEEEEETFVEGMEGQGEGQEGPEAGPADPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRASPR
Sbjct: 1 MSDAQMRTASSTTCSLHGRRKRPRPFPRALTAATAAAYTVLFTFSCPPPTVHARPSPPPSAASPSNPNGNPWSYYDGPSSYTPGRPNDQPPPPSASRPQRAGGGYPPYLGDEEEENERRAPGKVRNRRPLSASTAGGSSLPMPREGAAWGGVGRRRDGRERTEGFRYQAQYLVEEEEETFVEGMEGQGEGQEGPEAGPADPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRASPR 317
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|397574065|gb|EJK49009.1| (hypothetical protein THAOC_32153 [Thalassiosira oceanica]) HSP 1 Score: 80.8777 bits (198), Expect = 2.358e-13 Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 0
Query: 173 VEEEEETFVEGMEGQGEGQEGPE--AGPA-DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPV---ENPWAY 311
++ +E +V + + EG A P D V Y + +G + V V GA LG + S ++ P A+A L L S LRND+G+L RALGL + + R S YP + ++ +LR PR+PFPPV ++PW Y
Sbjct: 247 LDSDERYYVYSQRSRRDEDEGERLRASPRRDAVTTYMSGKRGAIKVRFGCVVVGAALGGFIGKSLLNDPKVAAVAFSLLFLVTSFLRNDYGELSRALGLAFVMTLNRTSSVRREYPTMPHIKAMLRQKPRKPFPPVDEGDSPWRY 391
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|219118021|ref|XP_002179794.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408847|gb|EEC48780.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 80.8777 bits (198), Expect = 2.689e-13 Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 0
Query: 200 DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYV 312
D + Y + +G+ + L++G G +G L S ++RP + ++ + LRN +G+ +ALG+ LI+ V+R YP ++ L+ A RR FPP+ENPWAYV
Sbjct: 178 DAIGRYMSTSRGKALLLLSSGTVGGAIGAFLGKSLLNRPFALSIPFFFTFWIAANLRNSYGEFVKALGMTLIFAVQRSRRIRKTYPTFCHVKALIGAAQRREFPPIENPWAYV 290
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|223992635|ref|XP_002286001.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977316|gb|EED95642.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 78.5666 bits (192), Expect = 1.503e-12 Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 0
Query: 200 DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPV---ENPWAY 311
D V +Y + +G V + V GA LG + S ++ P + L LRND+G+L RALGL + +R S YP L L+ ++R PR+PFPPV ++PW Y
Sbjct: 321 DAVTMYMSTRRGAFKVRFGSVVVGATLGAFIGKSLMNDPFVISFVTASLLFIAGFLRNDYGELSRALGLAFLLTCQRTSSVRKEYPTLVHLKAMIRQGPRKPFPPVDEGDSPWKY 435
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|1210528405|dbj|GAX12927.1| (hypothetical protein FisN_22Hu260 [Fistulifera solaris]) HSP 1 Score: 67.0106 bits (162), Expect = 9.438e-9 Identity = 48/143 (33.57%), Postives = 69/143 (48.25%), Query Frame = 0
Query: 173 VEEEEETFVEGMEGQGEGQEG--PEAGPA--DPVDLYCARWQGRMAVTLAAGVAGAGLGLGLSASAIHRPASCALAGLGLGLFLSLLRNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAY 311
V EE+ + E +EG PE A DPV L+ + ++GR+ + +A GA L L H P + A +G LLR FGD R+L L +++ ++R YP ++ LR PRRP+PP NPW Y
Sbjct: 93 VRLEEDGNLGAFGEYSESKEGKVPEYASARRDPVTLFQSTFRGRLLLFASAFSTGALLSAFLLHGWWH-PGALAFT---IGY---LLRGAFGDCVRSLALAMLWTMQRSRRVWKEYPTWRHVKACLRAGPRRPYPPTSNPWNY 228
BLAST of EWM23375.1 vs. NCBI_GenBank
Match: gi|299116521|emb|CBN74709.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 60.077 bits (144), Expect = 8.273e-7 Identity = 32/59 (54.24%), Postives = 34/59 (57.63%), Query Frame = 0
Query: 256 RNDFGDLFRALGLLLIYLVERQVSTGTAYPALHQLRPLLRLAPRRPFPPVENPWAYVRA 314
R FGDLFRALGL + V R YP L R L + PRRPFPP ENPW Y RA
Sbjct: 28 RGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRA 86 The following BLAST results are available for this feature:
BLAST of EWM23375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|