rna7314, rna7314 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7314
Unique Name	rna7314
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	348
Alignment location	CM002471.1:305659..307161 -

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Properties


Property Name	Value
Product	proteasome ( macropain) beta 6
Orig transcript id	gnl\|cribi\|Naga_100472g2.10260.mrna
Orig protein id	gnl\|cribi\|Naga_100472g2.10260
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:305659..307161 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100472g2	gene7079	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7314	rna7314-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23378.1	cds7297	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:305659..307161-
coding sequence from alignment at CM002471.1:305659..307161-

mRNA sequence

>rna7314 ID=rna7314|Name=rna7314|organism=Nannochloropsis gaditana|type=mRNA|length=348bp
ATGAAATCGAGAGCCTTGAGGATGGCTGGGGGTGGAGGGAGGCGTCCAGG
CAGACACTGTAAGATACCCGGAGGTAGGACCCGACAGCAAGACGGAGCCG
ACGTTCTCCTGTCCATAGCGCCTTTTGGACCACCCACGGCAGTCATGGGA
AGGAGAAGACATCGGTGCGTTCCCTGCGCACAAGAAGCATTGTCGGCGGT
CGAAAGGCCGAGGAGTAACAAATGGAAGACCGAGTCCTCCTTATGGAGGG
GTCTCCAAGCTTCCGTCTTGTTCATTCTTACTTCTTCTTTCGGAACTCAT
GTTGTGCCGTCCCTATGCTCGGCTTTTCTCCCAGAATTCCTCCCTTGA

protein sequence of rna7314

>rna7314-protein ID=rna7314-protein|Name=rna7314|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVAN
RVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYT
AAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIG
GSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVT
IDKSGVSREFIPGDKLPYGP

mRNA from alignment at CM002471.1:305659..307161-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7314 ID=rna7314|Name=rna7314|organism=Nannochloropsis gaditana|type=mRNA|length=1503bp|location=Sequence derived from alignment at CM002471.1:305659..307161- (Nannochloropsis gaditana)
ATGGCAATGCCAAGTACAAGTCTGGAACATTCAATGGGCCTGAAACCTGG
CGAAGTCGCGACTGGGGTACGTTTTTTCCTTATGCCCCATCTTCAGCTTG
CTCCATCCCACTTGTTGCGGTCACTTCATTCCCCTTCCTCAACCGTTCTT
GTTCCCCAATCCGCCAGACCACGATCATGGCCGTCGAATTTGACGGAGGC
GTGGTCCTAGGAGCCGATTCCCGCACATCCACAGGAACTTACGTGGCCAA
TCGTGTGAGTGACAAGCTAACCGCCTTGCACCACCACATCTACTGCTGCC
GGTCCGGTTCTGCCGCCGACACGCAGGCCCTGGCCGACTACGTCCGGTAC
TTCCTAGCTTCCCATGCCATTGACCTGGGACGTACTCCTGCGGTTTACAC
CGCGGCGAAGCTCATGTCGACCCTGATATACAGAAACAAGGATAACTTGC
TAGGTGAGGGGTGGGGGGAGGGAGGTTTGGAGGATTCGGGGGCATCGACG
GCCCATATATCCCATTTGTGTCGACCAAAATGTTTGCACCCTCACTTTCC
GCCGCTATTCACCTTTCTTTTCGCCTGTGGCGGCACGCAGCGGGTGTGAT
AATCGGGGGATGGGACCCGAAGGACGGGGGCCAGGTCTACACGGTCACGC
TGGGGGGGACGCTGCAGCGACAGAAATTCTCCATCGGCGGTAGCGAGGGA
GGGGGCCAGCGTTGGGGGCGGGAGGGAAGAAAGGGAAGCTGAGGAGAGGA
TATGCACAGCCTCTGTATGGGGCTCACATTCGGCCCTCATGCTCCCCTCT
CCTCCCTCCCTCTTCTTCCCTTTTCCTCCCTCGTCCGCAGGCTCGGGGTC
CACCTACATTTACGGCCACGTGGACGAGGCCTTCAAGGAGAACATGACCC
GCGAGGAATGCCAGAACTTTGTCAAGAAAGGTGGGTTCTTTCCCTTCCCC
TCCCTCGTCTCCCCTCTCCCGCCGAAACTCTCCATGCCCGTGTCTTCGCC
CCTCCAACACCCCTCATGCCCGTGTCTTCGCCCCTCCAACAATCCTCCCT
CGCCCTTGTCCTCCCAGCCATCTCACACGCCATGGCGAGGGACGGATCGT
CGGGAGGAGTCATCCGCATGGTCACTATTGACAAGTCGGGGGTCTCCAGG
GAGTTCATCCCAGGTAGGGAGGGAGAGCGGGAGGGAGGGAGGGAGGGAGG
GAGATAGCGGCGTGTGGATCGATGTACAAATAGTCTAGTCGCAGAGTCGG
ACCATAGAGGAGGGAGGGACAGGGCTGTACACAAATCAAAGGGCTTACTC
TCCCGCTTCCTAATGCCCGTGGGTAACAGGTGATAAGCTGCCGTACGGGC
CCTAGGCGGGAGGGCTGGAAGGAGGGGGGGGGGCGGGGTAGGGGGGGGGT
GTATCAAGGGAGGAATTCTGGGAGAAAAGCCGAGCATAGGGACGGCACAA
CATGAGTTCCGAAAGAAGAAGTAAGAATGAACAAGACGGAAGCTTGGAGA
CCC

Coding sequence (CDS) from alignment at CM002471.1:305659..307161-

>rna7314 ID=rna7314|Name=rna7314|organism=Nannochloropsis gaditana|type=CDS|length=3978bp|location=Sequence derived from alignment at CM002471.1:305659..307161- (Nannochloropsis gaditana)
GTGATAAGCTGCCGTACGGGCCCTAGCCATCTCACACGCCATGGCGAGGG
ACGGATCGTCGGGAGGAGTCATCCGCATGGTCACTATTGACAAGTCGGGG
GTCTCCAGGGAGTTCATCCCAGGCTCGGGGTCCACCTACATTTACGGCCA
CGTGGACGAGGCCTTCAAGGAGAACATGACCCGCGAGGAATGCCAGAACT
TTGTCAAGAAAGCGGGTGTGATAATCGGGGGATGGGACCCGAAGGACGGG
GGCCAGGTCTACACGGTCACGCTGGGGGGGACGCTGCAGCGACAGAAATT
CTCCATCGGCGACCACGATCATGGCCGTCGAATTTGACGGAGGCGTGGTC
CTAGGAGCCGATTCCCGCACATCCACAGGAACTTACGTGGCCAATCGTGT
GAGTGACAAGCTAACCGCCTTGCACCACCACATCTACTGCTGCCGGTCCG
GTTCTGCCGCCGACACGCAGGCCCTGGCCGACTACGTCCGGTACTTCCTA
GCTTCCCATGCCATTGACCTGGGACGTACTCCTGCGGTTTACACCGCGGC
GAAGCTCATGTCGACCCTGATATACAGAAACAAGGATAACTTGCTAGATG
GCAATGCCAAGTACAAGTCTGGAACATTCAATGGGCCTGAAACCTGGCGA
AGTCGCGACTGGGGTGATAAGCTGCCGTACGGGCCCTAGCCATCTCACAC
GCCATGGCGAGGGACGGATCGTCGGGAGGAGTCATCCGCATGGTCACTAT
TGACAAGTCGGGGGTCTCCAGGGAGTTCATCCCAGGCTCGGGGTCCACCT
ACATTTACGGCCACGTGGACGAGGCCTTCAAGGAGAACATGACCCGCGAG
GAATGCCAGAACTTTGTCAAGAAAGCGGGTGTGATAATCGGGGGATGGGA
CCCGAAGGACGGGGGCCAGGTCTACACGGTCACGCTGGGGGGGACGCTGC
AGCGACAGAAATTCTCCATCGGCGACCACGATCATGGCCGTCGAATTTGA
CGGAGGCGTGGTCCTAGGAGCCGATTCCCGCACATCCACAGGAACTTACG
TGGCCAATCGTGTGAGTGACAAGCTAACCGCCTTGCACCACCACATCTAC
TGCTGCCGGTCCGGTTCTGCCGCCGACACGCAGGCCCTGGCCGACTACGT
CCGGTACTTCCTAGCTTCCCATGCCATTGACCTGGGACGTACTCCTGCGG
TTTACACCGCGGCGAAGCTCATGTCGACCCTGATATACAGAAACAAGGAT
AACTTGCTAGATGGCAATGCCAAGTACAAGTCTGGAACATTCAATGGGCC
TGAAACCTGGCGAAGTCGCGACTGGGGTGATAAGCTGCCGTACGGGCCCT
AGCCATCTCACACGCCATGGCGAGGGACGGATCGTCGGGAGGAGTCATCC
GCATGGTCACTATTGACAAGTCGGGGGTCTCCAGGGAGTTCATCCCAGGC
TCGGGGTCCACCTACATTTACGGCCACGTGGACGAGGCCTTCAAGGAGAA
CATGACCCGCGAGGAATGCCAGAACTTTGTCAAGAAAGCGGGTGTGATAA
TCGGGGGATGGGACCCGAAGGACGGGGGCCAGGTCTACACGGTCACGCTG
GGGGGGACGCTGCAGCGACAGAAATTCTCCATCGGCGACCACGATCATGG
CCGTCGAATTTGACGGAGGCGTGGTCCTAGGAGCCGATTCCCGCACATCC
ACAGGAACTTACGTGGCCAATCGTGTGAGTGACAAGCTAACCGCCTTGCA
CCACCACATCTACTGCTGCCGGTCCGGTTCTGCCGCCGACACGCAGGCCC
TGGCCGACTACGTCCGGTACTTCCTAGCTTCCCATGCCATTGACCTGGGA
CGTACTCCTGCGGTTTACACCGCGGCGAAGCTCATGTCGACCCTGATATA
CAGAAACAAGGATAACTTGCTAGATGGCAATGCCAAGTACAAGTCTGGAA
CATTCAATGGGCCTGAAACCTGGCGAAGTCGCGACTGGGGTGATAAGCTG
CCGTACGGGCCCTAGCCATCTCACACGCCATGGCGAGGGACGGATCGTCG
GGAGGAGTCATCCGCATGGTCACTATTGACAAGTCGGGGGTCTCCAGGGA
GTTCATCCCAGGCTCGGGGTCCACCTACATTTACGGCCACGTGGACGAGG
CCTTCAAGGAGAACATGACCCGCGAGGAATGCCAGAACTTTGTCAAGAAA
GCGGGTGTGATAATCGGGGGATGGGACCCGAAGGACGGGGGCCAGGTCTA
CACGGTCACGCTGGGGGGGACGCTGCAGCGACAGAAATTCTCCATCGGCG
ACCACGATCATGGCCGTCGAATTTGACGGAGGCGTGGTCCTAGGAGCCGA
TTCCCGCACATCCACAGGAACTTACGTGGCCAATCGTGTGAGTGACAAGC
TAACCGCCTTGCACCACCACATCTACTGCTGCCGGTCCGGTTCTGCCGCC
GACACGCAGGCCCTGGCCGACTACGTCCGGTACTTCCTAGCTTCCCATGC
CATTGACCTGGGACGTACTCCTGCGGTTTACACCGCGGCGAAGCTCATGT
CGACCCTGATATACAGAAACAAGGATAACTTGCTAGATGGCAATGCCAAG
TACAAGTCTGGAACATTCAATGGGCCTGAAACCTGGCGAAGTCGCGACTG
GGGTGATAAGCTGCCGTACGGGCCCTAGCCATCTCACACGCCATGGCGAG
GGACGGATCGTCGGGAGGAGTCATCCGCATGGTCACTATTGACAAGTCGG
GGGTCTCCAGGGAGTTCATCCCAGGCTCGGGGTCCACCTACATTTACGGC
CACGTGGACGAGGCCTTCAAGGAGAACATGACCCGCGAGGAATGCCAGAA
CTTTGTCAAGAAAGCGGGTGTGATAATCGGGGGATGGGACCCGAAGGACG
GGGGCCAGGTCTACACGGTCACGCTGGGGGGGACGCTGCAGCGACAGAAA
TTCTCCATCGGCGACCACGATCATGGCCGTCGAATTTGACGGAGGCGTGG
TCCTAGGAGCCGATTCCCGCACATCCACAGGAACTTACGTGGCCAATCGT
GTGAGTGACAAGCTAACCGCCTTGCACCACCACATCTACTGCTGCCGGTC
CGGTTCTGCCGCCGACACGCAGGCCCTGGCCGACTACGTCCGGTACTTCC
TAGCTTCCCATGCCATTGACCTGGGACGTACTCCTGCGGTTTACACCGCG
GCGAAGCTCATGTCGACCCTGATATACAGAAACAAGGATAACTTGCTAGA
TGGCAATGCCAAGTACAAGTCTGGAACATTCAATGGGCCTGAAACCTGGC
GAAGTCGCGACTGGGGTGATAAGCTGCCGTACGGGCCCTAGCCATCTCAC
ACGCCATGGCGAGGGACGGATCGTCGGGAGGAGTCATCCGCATGGTCACT
ATTGACAAGTCGGGGGTCTCCAGGGAGTTCATCCCAGGCTCGGGGTCCAC
CTACATTTACGGCCACGTGGACGAGGCCTTCAAGGAGAACATGACCCGCG
AGGAATGCCAGAACTTTGTCAAGAAAGCGGGTGTGATAATCGGGGGATGG
GACCCGAAGGACGGGGGCCAGGTCTACACGGTCACGCTGGGGGGGACGCT
GCAGCGACAGAAATTCTCCATCGGCGACCACGATCATGGCCGTCGAATTT
GACGGAGGCGTGGTCCTAGGAGCCGATTCCCGCACATCCACAGGAACTTA
CGTGGCCAATCGTGTGAGTGACAAGCTAACCGCCTTGCACCACCACATCT
ACTGCTGCCGGTCCGGTTCTGCCGCCGACACGCAGGCCCTGGCCGACTAC
GTCCGGTACTTCCTAGCTTCCCATGCCATTGACCTGGGACGTACTCCTGC
GGTTTACACCGCGGCGAAGCTCATGTCGACCCTGATATACAGAAACAAGG
ATAACTTGCTAGATGGCAATGCCAAGTACAAGTCTGGAACATTCAATGGG
CCTGAAACCTGGCGAAGTCGCGACTGGG

Synonyms

Publications