EWM23378.1, cds7297 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|585104387|gb|EWM23378.1| (proteasome ( macropain) beta 6 [Nannochloropsis gaditana]) HSP 1 Score: 454.907 bits (1169), Expect = 4.790e-162 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 Query: 1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP Sbjct: 1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|553176955|ref|XP_005852420.1| (20S proteasome subunit beta 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296113|gb|EKU23412.1| 20S proteasome subunit beta 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 394.43 bits (1012), Expect = 1.842e-138 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0 Query: 1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDG 190 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDG Sbjct: 1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDG 190
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|298708558|emb|CBJ30643.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 342.428 bits (877), Expect = 1.527e-117 Identity = 160/208 (76.92%), Postives = 184/208 (88.46%), Query Frame = 0 Query: 13 GLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220 GLK GE++TGTTIMAV++DGGV++GADSRTSTGTYVANRVSDK+T+LH HIY CRSGSAADTQA+ DYVRYFLASH+++LGR P V TAAK+ L Y NKD LLAG+II GWDP DGG VY + LGGT+ +QKF+IGGSGSTYIYGHVD AFKENMT+EE Q FV+KAISHAMARDGSSGGVIRMV IDK+GVS E+IPGD+LP+GP Sbjct: 11 GLKDGEISTGTTIMAVQYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAITDYVRYFLASHSVELGRLPLVKTAAKMARGLCYNNKDRLLAGMIIAGWDPVDGGTVYEIPLGGTMMKQKFAIGGSGSTYIYGHVDAAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSCEYIPGDQLPFGP 218
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|325181392|emb|CCA15808.1| (proteasome subunit beta type6 putative [Albugo laibachii Nc14]) HSP 1 Score: 307.76 bits (787), Expect = 9.450e-104 Identity = 143/205 (69.76%), Postives = 172/205 (83.90%), Query Frame = 0 Query: 14 LKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218 LK GEV GT+I+AV+FDGGVVLGADSRTSTG YVANRVSDKLT LH IYCCRSGSAADTQAL+DYVRYFL+SH++D+G+ P V+TAA L +L Y NKD LLAG+I+ GWDP GGQVY++ +GG + +Q F+IGGSGSTYIYG VD A++ +MT+EECQ FVKK ++HAMARDGSSGGVIR VTI K V+REF G++LP+ Sbjct: 10 LKNGEVDAGTSIIAVKFDGGVVLGADSRTSTGAYVANRVSDKLTGLHDRIYCCRSGSAADTQALSDYVRYFLSSHSLDVGKLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPVHGGQVYSIPIGGAMVKQNFAIGGSGSTYIYGLVDAAYRPDMTQEECQAFVKKMLAHAMARDGSSGGVIRTVTITKDSVTREFTSGEQLPF 214
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|635364832|emb|CCI46756.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 306.22 bits (783), Expect = 2.888e-103 Identity = 142/205 (69.27%), Postives = 172/205 (83.90%), Query Frame = 0 Query: 14 LKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218 LK GE+ GT+I+AV+FDGGVVLGADSRTSTG YVANRVSDKLT LH IYCCRSGSAADTQAL+DYVRYFL+SH++D+G+ P V+TAA L +L Y NKD LLAG+I+ GWDP GGQVY++ +GG + +Q F+IGGSGSTYIYG VD A++ +MT+EECQ FVKK ++HAMARDGSSGGVIR VTI K V+R+F GD+LP+ Sbjct: 10 LKNGEIDAGTSIIAVKFDGGVVLGADSRTSTGAYVANRVSDKLTGLHDRIYCCRSGSAADTQALSDYVRYFLSSHSLDVGKLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPVHGGQVYSIPIGGAMVKQNFAIGGSGSTYIYGLVDAAYRPDMTQEECQAFVKKMLAHAMARDGSSGGVIRTVTITKDCVTRDFTSGDQLPF 214
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|675183303|ref|XP_008900536.1| (hypothetical protein PPTG_07910 [Phytophthora parasitica INRA-310] >gi|566030841|gb|ETI53752.1| hypothetical protein F443_03356 [Phytophthora parasitica P1569] >gi|567968503|gb|ETK93633.1| hypothetical protein L915_03223 [Phytophthora parasitica] >gi|567996932|gb|ETL47028.1| hypothetical protein L916_03189 [Phytophthora parasitica] >gi|568026130|gb|ETM00126.1| hypothetical protein L917_03124 [Phytophthora parasitica] >gi|568056597|gb|ETM53307.1| hypothetical protein L914_03210 [Phytophthora parasitica] >gi|568099566|gb|ETN14280.1| hypothetical protein PPTG_07910 [Phytophthora parasitica INRA-310] >gi|570334493|gb|ETO82441.1| hypothetical protein F444_03423 [Phytophthora parasitica P1976] >gi|570958582|gb|ETP23561.1| hypothetical protein F441_03340 [Phytophthora parasitica CJ01A1] >gi|570994444|gb|ETP51572.1| hypothetical protein F442_03322 [Phytophthora parasitica P10297]) HSP 1 Score: 303.908 bits (777), Expect = 3.153e-102 Identity = 142/216 (65.74%), Postives = 173/216 (80.09%), Query Frame = 0 Query: 3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218 M ++ LKPGEV GT+I+AV F+GGVVLGADSRTSTGTYVANRVSDKLT LH ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L +L Y NKD LLAG+I+ GWDP GGQV+++ +GG + Q F+IGGSGSTYIYG VD ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V R+F GD LP+ Sbjct: 1 MTKQEVDEGSYLKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQQFVKKALAHAMARDGSSGGVIRTVTITENEVVRDFTSGDDLPF 216
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|301104168|ref|XP_002901169.1| (proteasome subunit beta type-6, putative [Phytophthora infestans T30-4] >gi|262101103|gb|EEY59155.1| proteasome subunit beta type-6, putative [Phytophthora infestans T30-4]) HSP 1 Score: 303.523 bits (776), Expect = 4.101e-102 Identity = 142/216 (65.74%), Postives = 173/216 (80.09%), Query Frame = 0 Query: 3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218 M ++ LKPGEV GT+I+AV F+GGVVLGADSRTSTGTYVANRVSDKLT LH ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L +L Y NKD LLAG+I+ GWDP GGQV+++ +GG + Q F+IGGSGSTYIYG VD ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V REF G+ LP+ Sbjct: 1 MTKQEVDEGSYLKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQRFVKKALAHAMARDGSSGGVIRTVTITENEVVREFTSGEDLPF 216
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|970634315|gb|KUF79606.1| (Proteasome subunit beta type-6 [Phytophthora nicotianae] >gi|970652870|gb|KUF91451.1| hypothetical protein AM588_10003319 [Phytophthora nicotianae]) HSP 1 Score: 300.442 bits (768), Expect = 6.266e-101 Identity = 141/216 (65.28%), Postives = 172/216 (79.63%), Query Frame = 0 Query: 3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218 M ++ LKPGEV GT+I+AV F+GGVVLGADSRTSTGTYVAN VSDKLT LH ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L +L Y NKD LLAG+I+ GWDP GGQV+++ +GG + Q F+IGGSGSTYIYG VD ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V R+F GD LP+ Sbjct: 1 MTKQEVDEGSYLKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANCVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQQFVKKALAHAMARDGSSGGVIRTVTITENEVVRDFTSGDDLPF 216
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|953498437|emb|CEG40075.1| (proteasome subunit beta type [Plasmopara halstedii]) HSP 1 Score: 297.745 bits (761), Expect = 8.963e-100 Identity = 140/216 (64.81%), Postives = 173/216 (80.09%), Query Frame = 0 Query: 3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218 M ++ + LKPGEV GT+I+AV F GGVVLGADSRTSTGTYVANRVSDKLT LH ++CCRSGSAADTQAL+DYVRY+L+SH+I+LGR P V TAA L +L Y NKD LLAG+I+ GWDP GGQV+++ +GG + Q F+IGGSGSTYIYG VD ++ +MT EECQ+FVKKA++HAMARDGSSGGVIR VTI ++ V R++ GD +P+ Sbjct: 1 MTKCEVDEASYLKPGEVDAGTSIIAVRFKGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSIELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPDMTMEECQHFVKKALAHAMARDGSSGGVIRTVTITENDVVRDYTCGDDIPF 216
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|301118843|ref|XP_002907149.1| (proteasome subunit beta type-6, putative [Phytophthora infestans T30-4] >gi|262105661|gb|EEY63713.1| proteasome subunit beta type-6, putative [Phytophthora infestans T30-4]) HSP 1 Score: 305.449 bits (781), Expect = 5.545e-97 Identity = 141/205 (68.78%), Postives = 170/205 (82.93%), Query Frame = 0 Query: 14 LKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218 LKPGEV GT+I+AV F+GGVVLGADSRTSTGTYVANRVSDKLT LH ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L +L Y NKD LLAG+I+ GWDP GGQV+++ +GG + Q F+IGGSGSTYIYG VD ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V REF G+ LP+ Sbjct: 467 LKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQRFVKKALAHAMARDGSSGGVIRTVTITENEVVREFTSGEDLPF 671 The following BLAST results are available for this feature:
BLAST of EWM23378.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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