EWM23378.1, cds7297 (CDS) Nannochloropsis gaditana

Overview
NameEWM23378.1
Unique Namecds7297
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:307096..307161 -
Alignment locationCM002471.1:306709..306994 -
Alignment locationCM002471.1:306473..306571 -
Alignment locationCM002471.1:306232..306321 -
Alignment locationCM002471.1:305999..306094 -
Alignment locationCM002471.1:305807..305832 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23378.1
Productproteasome ( macropain) beta 6
Orig transcript idgnl|cribi|Naga_100472g2.10260.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:307096..307161 -
CM002471.1supercontigCM002471.1:306709..306994 -
CM002471.1supercontigCM002471.1:306473..306571 -
CM002471.1supercontigCM002471.1:306232..306321 -
CM002471.1supercontigCM002471.1:305999..306094 -
CM002471.1supercontigCM002471.1:305807..305832 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
GO:0004175endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR023333Proteasome_suB-type
IPR016050Proteasome_bsu_CS
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
IPR000243Pept_T1A_subB
Homology
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|585104387|gb|EWM23378.1| (proteasome ( macropain) beta 6 [Nannochloropsis gaditana])

HSP 1 Score: 454.907 bits (1169), Expect = 4.790e-162
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
Query:    1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220
            MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP
Sbjct:    1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|553176955|ref|XP_005852420.1| (20S proteasome subunit beta 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296113|gb|EKU23412.1| 20S proteasome subunit beta 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 394.43 bits (1012), Expect = 1.842e-138
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0
Query:    1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDG 190
            MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDG
Sbjct:    1 MAMPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDG 190          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|298708558|emb|CBJ30643.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 342.428 bits (877), Expect = 1.527e-117
Identity = 160/208 (76.92%), Postives = 184/208 (88.46%), Query Frame = 0
Query:   13 GLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPYGP 220
            GLK GE++TGTTIMAV++DGGV++GADSRTSTGTYVANRVSDK+T+LH HIY CRSGSAADTQA+ DYVRYFLASH+++LGR P V TAAK+   L Y NKD LLAG+II GWDP DGG VY + LGGT+ +QKF+IGGSGSTYIYGHVD AFKENMT+EE Q FV+KAISHAMARDGSSGGVIRMV IDK+GVS E+IPGD+LP+GP
Sbjct:   11 GLKDGEISTGTTIMAVQYDGGVIMGADSRTSTGTYVANRVSDKITSLHDHIYACRSGSAADTQAITDYVRYFLASHSVELGRLPLVKTAAKMARGLCYNNKDRLLAGMIIAGWDPVDGGTVYEIPLGGTMMKQKFAIGGSGSTYIYGHVDAAFKENMTKEEAQQFVRKAISHAMARDGSSGGVIRMVVIDKTGVSCEYIPGDQLPFGP 218          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|325181392|emb|CCA15808.1| (proteasome subunit beta type6 putative [Albugo laibachii Nc14])

HSP 1 Score: 307.76 bits (787), Expect = 9.450e-104
Identity = 143/205 (69.76%), Postives = 172/205 (83.90%), Query Frame = 0
Query:   14 LKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218
            LK GEV  GT+I+AV+FDGGVVLGADSRTSTG YVANRVSDKLT LH  IYCCRSGSAADTQAL+DYVRYFL+SH++D+G+ P V+TAA L  +L Y NKD LLAG+I+ GWDP  GGQVY++ +GG + +Q F+IGGSGSTYIYG VD A++ +MT+EECQ FVKK ++HAMARDGSSGGVIR VTI K  V+REF  G++LP+
Sbjct:   10 LKNGEVDAGTSIIAVKFDGGVVLGADSRTSTGAYVANRVSDKLTGLHDRIYCCRSGSAADTQALSDYVRYFLSSHSLDVGKLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPVHGGQVYSIPIGGAMVKQNFAIGGSGSTYIYGLVDAAYRPDMTQEECQAFVKKMLAHAMARDGSSGGVIRTVTITKDSVTREFTSGEQLPF 214          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|635364832|emb|CCI46756.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 306.22 bits (783), Expect = 2.888e-103
Identity = 142/205 (69.27%), Postives = 172/205 (83.90%), Query Frame = 0
Query:   14 LKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218
            LK GE+  GT+I+AV+FDGGVVLGADSRTSTG YVANRVSDKLT LH  IYCCRSGSAADTQAL+DYVRYFL+SH++D+G+ P V+TAA L  +L Y NKD LLAG+I+ GWDP  GGQVY++ +GG + +Q F+IGGSGSTYIYG VD A++ +MT+EECQ FVKK ++HAMARDGSSGGVIR VTI K  V+R+F  GD+LP+
Sbjct:   10 LKNGEIDAGTSIIAVKFDGGVVLGADSRTSTGAYVANRVSDKLTGLHDRIYCCRSGSAADTQALSDYVRYFLSSHSLDVGKLPKVHTAANLFRSLCYNNKDRLLAGIIVAGWDPVHGGQVYSIPIGGAMVKQNFAIGGSGSTYIYGLVDAAYRPDMTQEECQAFVKKMLAHAMARDGSSGGVIRTVTITKDCVTRDFTSGDQLPF 214          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|675183303|ref|XP_008900536.1| (hypothetical protein PPTG_07910 [Phytophthora parasitica INRA-310] >gi|566030841|gb|ETI53752.1| hypothetical protein F443_03356 [Phytophthora parasitica P1569] >gi|567968503|gb|ETK93633.1| hypothetical protein L915_03223 [Phytophthora parasitica] >gi|567996932|gb|ETL47028.1| hypothetical protein L916_03189 [Phytophthora parasitica] >gi|568026130|gb|ETM00126.1| hypothetical protein L917_03124 [Phytophthora parasitica] >gi|568056597|gb|ETM53307.1| hypothetical protein L914_03210 [Phytophthora parasitica] >gi|568099566|gb|ETN14280.1| hypothetical protein PPTG_07910 [Phytophthora parasitica INRA-310] >gi|570334493|gb|ETO82441.1| hypothetical protein F444_03423 [Phytophthora parasitica P1976] >gi|570958582|gb|ETP23561.1| hypothetical protein F441_03340 [Phytophthora parasitica CJ01A1] >gi|570994444|gb|ETP51572.1| hypothetical protein F442_03322 [Phytophthora parasitica P10297])

HSP 1 Score: 303.908 bits (777), Expect = 3.153e-102
Identity = 142/216 (65.74%), Postives = 173/216 (80.09%), Query Frame = 0
Query:    3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218
            M    ++    LKPGEV  GT+I+AV F+GGVVLGADSRTSTGTYVANRVSDKLT LH  ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L  +L Y NKD LLAG+I+ GWDP  GGQV+++ +GG +  Q F+IGGSGSTYIYG VD  ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V R+F  GD LP+
Sbjct:    1 MTKQEVDEGSYLKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQQFVKKALAHAMARDGSSGGVIRTVTITENEVVRDFTSGDDLPF 216          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|301104168|ref|XP_002901169.1| (proteasome subunit beta type-6, putative [Phytophthora infestans T30-4] >gi|262101103|gb|EEY59155.1| proteasome subunit beta type-6, putative [Phytophthora infestans T30-4])

HSP 1 Score: 303.523 bits (776), Expect = 4.101e-102
Identity = 142/216 (65.74%), Postives = 173/216 (80.09%), Query Frame = 0
Query:    3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218
            M    ++    LKPGEV  GT+I+AV F+GGVVLGADSRTSTGTYVANRVSDKLT LH  ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L  +L Y NKD LLAG+I+ GWDP  GGQV+++ +GG +  Q F+IGGSGSTYIYG VD  ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V REF  G+ LP+
Sbjct:    1 MTKQEVDEGSYLKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQRFVKKALAHAMARDGSSGGVIRTVTITENEVVREFTSGEDLPF 216          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|970634315|gb|KUF79606.1| (Proteasome subunit beta type-6 [Phytophthora nicotianae] >gi|970652870|gb|KUF91451.1| hypothetical protein AM588_10003319 [Phytophthora nicotianae])

HSP 1 Score: 300.442 bits (768), Expect = 6.266e-101
Identity = 141/216 (65.28%), Postives = 172/216 (79.63%), Query Frame = 0
Query:    3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218
            M    ++    LKPGEV  GT+I+AV F+GGVVLGADSRTSTGTYVAN VSDKLT LH  ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L  +L Y NKD LLAG+I+ GWDP  GGQV+++ +GG +  Q F+IGGSGSTYIYG VD  ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V R+F  GD LP+
Sbjct:    1 MTKQEVDEGSYLKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANCVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQQFVKKALAHAMARDGSSGGVIRTVTITENEVVRDFTSGDDLPF 216          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|953498437|emb|CEG40075.1| (proteasome subunit beta type [Plasmopara halstedii])

HSP 1 Score: 297.745 bits (761), Expect = 8.963e-100
Identity = 140/216 (64.81%), Postives = 173/216 (80.09%), Query Frame = 0
Query:    3 MPSTSLEHSMGLKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218
            M    ++ +  LKPGEV  GT+I+AV F GGVVLGADSRTSTGTYVANRVSDKLT LH  ++CCRSGSAADTQAL+DYVRY+L+SH+I+LGR P V TAA L  +L Y NKD LLAG+I+ GWDP  GGQV+++ +GG +  Q F+IGGSGSTYIYG VD  ++ +MT EECQ+FVKKA++HAMARDGSSGGVIR VTI ++ V R++  GD +P+
Sbjct:    1 MTKCEVDEASYLKPGEVDAGTSIIAVRFKGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSIELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPDMTMEECQHFVKKALAHAMARDGSSGGVIRTVTITENDVVRDYTCGDDIPF 216          
BLAST of EWM23378.1 vs. NCBI_GenBank
Match: gi|301118843|ref|XP_002907149.1| (proteasome subunit beta type-6, putative [Phytophthora infestans T30-4] >gi|262105661|gb|EEY63713.1| proteasome subunit beta type-6, putative [Phytophthora infestans T30-4])

HSP 1 Score: 305.449 bits (781), Expect = 5.545e-97
Identity = 141/205 (68.78%), Postives = 170/205 (82.93%), Query Frame = 0
Query:   14 LKPGEVATGTTIMAVEFDGGVVLGADSRTSTGTYVANRVSDKLTALHHHIYCCRSGSAADTQALADYVRYFLASHAIDLGRTPAVYTAAKLMSTLIYRNKDNLLAGVIIGGWDPKDGGQVYTVTLGGTLQRQKFSIGGSGSTYIYGHVDEAFKENMTREECQNFVKKAISHAMARDGSSGGVIRMVTIDKSGVSREFIPGDKLPY 218
            LKPGEV  GT+I+AV F+GGVVLGADSRTSTGTYVANRVSDKLT LH  ++CCRSGSAADTQAL+DYVRY+L+SH+++LGR P V TAA L  +L Y NKD LLAG+I+ GWDP  GGQV+++ +GG +  Q F+IGGSGSTYIYG VD  ++ NMT+EECQ FVKKA++HAMARDGSSGGVIR VTI ++ V REF  G+ LP+
Sbjct:  467 LKPGEVDAGTSIIAVRFNGGVVLGADSRTSTGTYVANRVSDKLTPLHDRLFCCRSGSAADTQALSDYVRYYLSSHSVELGRLPKVGTAANLFRSLCYHNKDRLLAGIIVAGWDPVKGGQVFSIPIGGAMVEQDFAIGGSGSTYIYGLVDSEYRPNMTKEECQRFVKKALAHAMARDGSSGGVIRTVTITENEVVREFTSGEDLPF 671          
The following BLAST results are available for this feature:
BLAST of EWM23378.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104387|gb|EWM23378.1|4.790e-162100.00proteasome ( macropain) beta 6 [Nannochloropsis ga... [more]
gi|553176955|ref|XP_005852420.1|1.842e-138100.0020S proteasome subunit beta 1, partial [Nannochlor... [more]
gi|298708558|emb|CBJ30643.1|1.527e-11776.92conserved unknown protein [Ectocarpus siliculosus][more]
gi|325181392|emb|CCA15808.1|9.450e-10469.76proteasome subunit beta type6 putative [Albugo lai... [more]
gi|635364832|emb|CCI46756.1|2.888e-10369.27unnamed protein product [Albugo candida][more]
gi|675183303|ref|XP_008900536.1|3.153e-10265.74hypothetical protein PPTG_07910 [Phytophthora para... [more]
gi|301104168|ref|XP_002901169.1|4.101e-10265.74proteasome subunit beta type-6, putative [Phytopht... [more]
gi|970634315|gb|KUF79606.1|6.266e-10165.28Proteasome subunit beta type-6 [Phytophthora nicot... [more]
gi|953498437|emb|CEG40075.1|8.963e-10064.81proteasome subunit beta type [Plasmopara halstedii... [more]
gi|301118843|ref|XP_002907149.1|5.545e-9768.78proteasome subunit beta type-6, putative [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7314rna7314Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications