rna7312, rna7312 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7312
Unique Name	rna7312
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1219
Alignment location	CM002471.1:303110..305377 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100472g4.10263.mrna
Orig protein id	gnl\|cribi\|Naga_100472g4.10263
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:303110..305377 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100472g4	gene7077	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7312	rna7312-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23381.1	cds7295	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:303110..305377+
coding sequence from alignment at CM002471.1:303110..305377+

mRNA sequence

>rna7312 ID=rna7312|Name=rna7312|organism=Nannochloropsis gaditana|type=mRNA|length=1219bp
GGATAAATGCCAATACACTGGCCATGGGGAGCAAAAGCAAAGCAGTACTT
GCCCTCCACCATGGCATAGCTTGCTGTGTGGGTGGGCATGTGCGTGGAAA
AGAAAGAATACATCAGAAAGGCCGCAGATGCATCTAGCTTTAAGTTGCTG
TTGTCTCGCAGGAAAGTCAACCAAGCTCGACACCTGTCAGGCTGACCCCC
CAGCACTCCGTTGCCTGACATTAAGGCGAATCGAAAAAGCGCATTCAGGG
CATAGAACCGTGACCCGTCTCTGCGTCGCCCGGTGAGAGGATATCAGGAC
TGCGACACTTTTTAGGAGGTGTTTTCCATTTGTCCGGAGGTTTGTGTGCC
TTCAGCGCGGTGCTTCCAGAAAGGTGGGAGGATACTTAAGTAGAATGTAC
GCCCCATCCCGTCACACACACAGGCAGCATGGTACAACCAGCTACAAAGC
TACGATCGTTTCTACACCTTTTGCCATCATGCATGCAATACCTTCTGGTA
GTGGTCGTCCTTATCCTGTCCTTGGGGCCCGCGAAGGCTTTCATTCCTCT
GCTACCACACATGCCACTGCAGCACCACAAATACCTTGCAGGGGGCCCTG
ATGTTGTCAGAATGGCTGTACAGGACTCTTCTACACTTGTGAGCCTTCCT
CATGACGAGTATATCAACACTCTTCCGGAGCAGGCAAGGAGCATGAAAGC
TGAATGGCAATACTTGCTTGTCGAACGTCTGGAAGCGCCCACAGAAACAC
AAGGAGGCCTGTTCCTTCCGTCCACGGACCAGGATCCCCTGCACATGGTC
CGCATCGTCTCCATAGGCTCAGGCCTCGTGGGAGAGAGCGGGATGTTGAC
CACCATCGAGAATCTGGGACCGGGCGATGTAGCCTACGTCAAACAACCTT
GGGGCATTGGCCCCCGCGACGAAAATTGGGAGGGGCGGAAATTCTCCTTC
ATTCGGAGCCACGATGTGCTAAGCCGTATTGGTCCCACTAAAGGGAAGGA
GTAGTAAGGAGGGGAAGCGGAGAAGGAGAGGGGAAGGGGCGACGATCGGA
GAGGGTATGCAAAGGCCTTTGAAAGCTTTTTCGAACTTAATGTGTGCCGT
GGTCCTCGAGCAGATGGTCTGCATGCCGGGAAGGAAACCTTAAAACGAAA
GCAATCACGACGACACAGCGTCTATGGAAGGGAAGTTGGATCAAGTCGCC
TTTCATTTGTGTCATTTTG

protein sequence of rna7312

>rna7312-protein ID=rna7312-protein|Name=rna7312|organism=Nannochloropsis gaditana|type=polypeptide|length=755bp
MPWWRASTALLLLPMASVLAFIPSAPPLESSWRRASLPLKHSCRRFSLPS
LFPRALPTSSSSPSSFASSSFFSSSFTSSSDSHVTPNPPIPSSPPGGEGN
FFSLRRLRAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEP
LLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQV
TKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLV
FAGLLIKAGAWEAAAPMVGGWGEGLKEALGRGSPAVGSRGNGGGQGPGGR
VSAFASCRLGGGEGGRLWKRLRVGRVGSRLPINKSASSAPLFASLLLPAP
STLAFLQPPCPLPSFPPSFPPSLSSAPLGAGTSIRREGSCPPPVSLSFPS
SSFPSSSSSFPSPRPSPSLPPSPDSPPPKRVRRKRLQRLAKRRRASDPAR
TKRRPRQQYLPPNPNVHGWDQHPDYLRGKWTLRSLSFRPPPSDPTAHADS
PSDAGGADTGEGPSLPPSPSALDVGPPPPPSLPPSVLAGLEMGCKSLVLK
GKSVLLLREGMGQLSPLGWEFTPANRRVVFEVASPSLSPPGSMPGSSPGP
SGPGEGEGEGRRLVWRFSGEVRRKPKHWCRVTGTVRVRLAPLPTSSPSSP
TSHGEAGPSGERDGQAPPRRRSIPSTKASWPVVASFELEKAMAPFQSLNT
WEKLLVWARLEADPNSKAGRRAKASVVRGPEGGGKEVGEEGEAAKEGRET
GPSSL

mRNA from alignment at CM002471.1:303110..305377+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7312 ID=rna7312|Name=rna7312|organism=Nannochloropsis gaditana|type=mRNA|length=2268bp|location=Sequence derived from alignment at CM002471.1:303110..305377+ (Nannochloropsis gaditana)
ATGCCATGGTGGAGGGCAAGTACTGCTTTGCTTTTGCTCCCCATGGCCAG
TGTATTGGCATTTATCCCCTCTGCGCCTCCGCTCGAGTCGTCATGGCGCC
GCGCTAGCCTCCCCCTGAAACATTCCTGCCGTCGtttctcactcccttcc
ctcttcccccgtgccctcccgacctcttcttcgtctccatcttctttcgc
ttcttcctccttcttctcttcttccttcacctcttcctccgactccCACG
TGACCCCAAACCCACCAATACCGTCATCACCtccagggggggagggaaac
ttTTTCTCCTTACGGCGGCTACGTGCAGCACTCGCAGCATTGCGAGAAAC
AGGATCCGCGGGTCTATTGGCTTACGGCATTGTCAACGCTTTATATTATA
CGGTGGCCATTACGATCATTTGGTTGTGTGTGGATGGGGACGTGGAGCCG
CTACTCTCGCCGAGCGCCCTGGGAGCCAcggcagcagccgcaggGACAGG
CAAAGCGGCCATGTCTGCCGCGACGAGTGCGCCGAGTCTCCGCCTTCTCA
GCACCCGATTTCTGAAAGTGGTGGCCATGGCGTGGGCCGGCTCGCAGGTG
ACCAAACCGCTTCGAGTGGGCGGGGCCATCCTCCTGGCGCCGGCCGTATC
GCGTCTGATGGGATACACAGAGCGGAAACTGCAGCTTCGAAGCAAAAGGC
AGACGCTGGCCGTGCTTCTGGCGGCATTGATGGTCTTCCCAACGCTGGTG
TTTGCCGGTTTGCTTATAAAggcgggggcgtgggaggccgCCGCTCCGAT
GGTgggcggatggggggaggggctgaaaGAGGCGTTGGGCAGAGGGAGTC
CTGCGGTGGGTTCAAGGGGGAAcggaggcgggcaagggccaggaggaagg
gtttcTGCCTTTGCAAGCTGCCGgttgggcgggggggaaggcgggaggct
gTGGAAAAGACTGCGGGTTGGGAGGGTAGGGTCGCGCCTCCCGATCAACA
AGTCGGCGTCCTCTGCGCCTCTCTTTGCCTcgttgctcctccccgctccc
tcgaCTTTGGCCTTTTTGCagccgccttgtcccctcccctccttcccgcc
ctccttcccgccctccctctcctccgccccactTGGAGCGGGCACAAGCa
tccggagggaaggatcgtgtccccctcccgtctctctctccttcccctcc
tcctccttcccctcctcctcctcctccttcccctcccctcgtccctctcc
gtccctccccccgtcccccgaCTCTCCCCCACCCAAACGCGTCCGCCGGA
AACGGCTGCAACGGCTCGCCAAACGCCGTCGggcctccgaccccgcccgG
ACAAAgcgccgcccccgccagcAGTACCTTCCCCCCAACCCGAACGTGCA
CGGCTGGGACCAGCACCCGGACTATCTCCGTGGGAAATGGACCTTGCGCT
CCTTGAGCTtccggcctccgccctctgaCCCCACGGCCCATGCCGACAGC
CCCTCGGACGCCGGGGGTGCGGACACCGGCGaaggcccctccctccctcc
ctccccctccgccctcgacgtgggcccccctcccccgccctccctcccgc
cctccgttcTGGCCGGGCTGGAGATGGGCTGCAAATCTCTGGTGCTGAAG
GGGAAAtcggtccttctccttcgcgaGGGGATGGGGCAGTTATCACCCCT
GGGCTGGGAGTTCACGCCCGCCAACCGCCGCGTCGTCTTCGAAgtggcct
ccccctccctttcccccccaggcTCCATGCCGGGGTCAAGCCCGGGGCCC
AGTGGGCCgggtgaaggggagggggagggacggaggctgGTCTGGCGGTT
CAGTGGGGAGGTCCGTCGGAAGCCCAAGCACTGGTGCCGCGTGACCGGCA
CGGTCCGGGTTCGtctcgcccctctccctacctcttccccttcctccccg
accaGTCACGGGGAGGCAGGCCCTTCTGGGGAGCGGGACGGACAAGCGCC
GCCGCGCCGTCGCAGCATCCCTTCCACGAAGGCGAGCTGGCCCGTGGTGG
CGAGTTTCGAGctggagaaggcgatggcgcCGTTCCAGAGCTTAAACACC
TGGGAGAAGCTCTTGGTATGGGCGCGATTGGAGGCGGACCCGAACagcaa
ggcggggaggagagccaaAGCGTCGGTCGTGAGGGGGCccgagggtgggg
ggaaggaagtgggggaggaaggagaggcggcaaaggaagggcgggaaacg
GGACCGTCGAGTTTATAG

Coding sequence (CDS) from alignment at CM002471.1:303110..305377+

>rna7312 ID=rna7312|Name=rna7312|organism=Nannochloropsis gaditana|type=CDS|length=2268bp|location=Sequence derived from alignment at CM002471.1:303110..305377+ (Nannochloropsis gaditana)
ATGCCATGGTGGAGGGCAAGTACTGCTTTGCTTTTGCTCCCCATGGCCAG
TGTATTGGCATTTATCCCCTCTGCGCCTCCGCTCGAGTCGTCATGGCGCC
GCGCTAGCCTCCCCCTGAAACATTCCTGCCGTCGtttctcactcccttcc
ctcttcccccgtgccctcccgacctcttcttcgtctccatcttctttcgc
ttcttcctccttcttctcttcttccttcacctcttcctccgactccCACG
TGACCCCAAACCCACCAATACCGTCATCACCtccagggggggagggaaac
ttTTTCTCCTTACGGCGGCTACGTGCAGCACTCGCAGCATTGCGAGAAAC
AGGATCCGCGGGTCTATTGGCTTACGGCATTGTCAACGCTTTATATTATA
CGGTGGCCATTACGATCATTTGGTTGTGTGTGGATGGGGACGTGGAGCCG
CTACTCTCGCCGAGCGCCCTGGGAGCCAcggcagcagccgcaggGACAGG
CAAAGCGGCCATGTCTGCCGCGACGAGTGCGCCGAGTCTCCGCCTTCTCA
GCACCCGATTTCTGAAAGTGGTGGCCATGGCGTGGGCCGGCTCGCAGGTG
ACCAAACCGCTTCGAGTGGGCGGGGCCATCCTCCTGGCGCCGGCCGTATC
GCGTCTGATGGGATACACAGAGCGGAAACTGCAGCTTCGAAGCAAAAGGC
AGACGCTGGCCGTGCTTCTGGCGGCATTGATGGTCTTCCCAACGCTGGTG
TTTGCCGGTTTGCTTATAAAggcgggggcgtgggaggccgCCGCTCCGAT
GGTgggcggatggggggaggggctgaaaGAGGCGTTGGGCAGAGGGAGTC
CTGCGGTGGGTTCAAGGGGGAAcggaggcgggcaagggccaggaggaagg
gtttcTGCCTTTGCAAGCTGCCGgttgggcgggggggaaggcgggaggct
gTGGAAAAGACTGCGGGTTGGGAGGGTAGGGTCGCGCCTCCCGATCAACA
AGTCGGCGTCCTCTGCGCCTCTCTTTGCCTcgttgctcctccccgctccc
tcgaCTTTGGCCTTTTTGCagccgccttgtcccctcccctccttcccgcc
ctccttcccgccctccctctcctccgccccactTGGAGCGGGCACAAGCa
tccggagggaaggatcgtgtccccctcccgtctctctctccttcccctcc
tcctccttcccctcctcctcctcctccttcccctcccctcgtccctctcc
gtccctccccccgtcccccgaCTCTCCCCCACCCAAACGCGTCCGCCGGA
AACGGCTGCAACGGCTCGCCAAACGCCGTCGggcctccgaccccgcccgG
ACAAAgcgccgcccccgccagcAGTACCTTCCCCCCAACCCGAACGTGCA
CGGCTGGGACCAGCACCCGGACTATCTCCGTGGGAAATGGACCTTGCGCT
CCTTGAGCTtccggcctccgccctctgaCCCCACGGCCCATGCCGACAGC
CCCTCGGACGCCGGGGGTGCGGACACCGGCGaaggcccctccctccctcc
ctccccctccgccctcgacgtgggcccccctcccccgccctccctcccgc
cctccgttcTGGCCGGGCTGGAGATGGGCTGCAAATCTCTGGTGCTGAAG
GGGAAAtcggtccttctccttcgcgaGGGGATGGGGCAGTTATCACCCCT
GGGCTGGGAGTTCACGCCCGCCAACCGCCGCGTCGTCTTCGAAgtggcct
ccccctccctttcccccccaggcTCCATGCCGGGGTCAAGCCCGGGGCCC
AGTGGGCCgggtgaaggggagggggagggacggaggctgGTCTGGCGGTT
CAGTGGGGAGGTCCGTCGGAAGCCCAAGCACTGGTGCCGCGTGACCGGCA
CGGTCCGGGTTCGtctcgcccctctccctacctcttccccttcctccccg
accaGTCACGGGGAGGCAGGCCCTTCTGGGGAGCGGGACGGACAAGCGCC
GCCGCGCCGTCGCAGCATCCCTTCCACGAAGGCGAGCTGGCCCGTGGTGG
CGAGTTTCGAGctggagaaggcgatggcgcCGTTCCAGAGCTTAAACACC
TGGGAGAAGCTCTTGGTATGGGCGCGATTGGAGGCGGACCCGAACagcaa
ggcggggaggagagccaaAGCGTCGGTCGTGAGGGGGCccgagggtgggg
ggaaggaagtgggggaggaaggagaggcggcaaaggaagggcgggaaacg
GGACCGTCGAGTTTATAG

Synonyms

Publications