EWM23381.1, cds7295 (CDS) Nannochloropsis gaditana

Overview
NameEWM23381.1
Unique Namecds7295
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:303110..305377 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23381.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100472g4.10263.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:303110..305377 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|585104390|gb|EWM23381.1| (hypothetical protein Naga_100472g4 [Nannochloropsis gaditana])

HSP 1 Score: 1448.72 bits (3749), Expect = 0.000e+0
Identity = 755/755 (100.00%), Postives = 755/755 (100.00%), Query Frame = 0
Query:    1 MPWWRASTALLLLPMASVLAFIPSAPPLESSWRRASLPLKHSCRRFSLPSLFPRALPTSSSSPSSFASSSFFSSSFTSSSDSHVTPNPPIPSSPPGGEGNFFSLRRLRAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVFAGLLIKAGAWEAAAPMVGGWGEGLKEALGRGSPAVGSRGNGGGQGPGGRVSAFASCRLGGGEGGRLWKRLRVGRVGSRLPINKSASSAPLFASLLLPAPSTLAFLQPPCPLPSFPPSFPPSLSSAPLGAGTSIRREGSCPPPVSLSFPSSSFPSSSSSFPSPRPSPSLPPSPDSPPPKRVRRKRLQRLAKRRRASDPARTKRRPRQQYLPPNPNVHGWDQHPDYLRGKWTLRSLSFRPPPSDPTAHADSPSDAGGADTGEGPSLPPSPSALDVGPPPPPSLPPSVLAGLEMGCKSLVLKGKSVLLLREGMGQLSPLGWEFTPANRRVVFEVASPSLSPPGSMPGSSPGPSGPGEGEGEGRRLVWRFSGEVRRKPKHWCRVTGTVRVRLAPLPTSSPSSPTSHGEAGPSGERDGQAPPRRRSIPSTKASWPVVASFELEKAMAPFQSLNTWEKLLVWARLEADPNSKAGRRAKASVVRGPEGGGKEVGEEGEAAKEGRETGPSSL 755
            MPWWRASTALLLLPMASVLAFIPSAPPLESSWRRASLPLKHSCRRFSLPSLFPRALPTSSSSPSSFASSSFFSSSFTSSSDSHVTPNPPIPSSPPGGEGNFFSLRRLRAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVFAGLLIKAGAWEAAAPMVGGWGEGLKEALGRGSPAVGSRGNGGGQGPGGRVSAFASCRLGGGEGGRLWKRLRVGRVGSRLPINKSASSAPLFASLLLPAPSTLAFLQPPCPLPSFPPSFPPSLSSAPLGAGTSIRREGSCPPPVSLSFPSSSFPSSSSSFPSPRPSPSLPPSPDSPPPKRVRRKRLQRLAKRRRASDPARTKRRPRQQYLPPNPNVHGWDQHPDYLRGKWTLRSLSFRPPPSDPTAHADSPSDAGGADTGEGPSLPPSPSALDVGPPPPPSLPPSVLAGLEMGCKSLVLKGKSVLLLREGMGQLSPLGWEFTPANRRVVFEVASPSLSPPGSMPGSSPGPSGPGEGEGEGRRLVWRFSGEVRRKPKHWCRVTGTVRVRLAPLPTSSPSSPTSHGEAGPSGERDGQAPPRRRSIPSTKASWPVVASFELEKAMAPFQSLNTWEKLLVWARLEADPNSKAGRRAKASVVRGPEGGGKEVGEEGEAAKEGRETGPSSL
Sbjct:    1 MPWWRASTALLLLPMASVLAFIPSAPPLESSWRRASLPLKHSCRRFSLPSLFPRALPTSSSSPSSFASSSFFSSSFTSSSDSHVTPNPPIPSSPPGGEGNFFSLRRLRAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVFAGLLIKAGAWEAAAPMVGGWGEGLKEALGRGSPAVGSRGNGGGQGPGGRVSAFASCRLGGGEGGRLWKRLRVGRVGSRLPINKSASSAPLFASLLLPAPSTLAFLQPPCPLPSFPPSFPPSLSSAPLGAGTSIRREGSCPPPVSLSFPSSSFPSSSSSFPSPRPSPSLPPSPDSPPPKRVRRKRLQRLAKRRRASDPARTKRRPRQQYLPPNPNVHGWDQHPDYLRGKWTLRSLSFRPPPSDPTAHADSPSDAGGADTGEGPSLPPSPSALDVGPPPPPSLPPSVLAGLEMGCKSLVLKGKSVLLLREGMGQLSPLGWEFTPANRRVVFEVASPSLSPPGSMPGSSPGPSGPGEGEGEGRRLVWRFSGEVRRKPKHWCRVTGTVRVRLAPLPTSSPSSPTSHGEAGPSGERDGQAPPRRRSIPSTKASWPVVASFELEKAMAPFQSLNTWEKLLVWARLEADPNSKAGRRAKASVVRGPEGGGKEVGEEGEAAKEGRETGPSSL 755          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|1190976080|ref|XP_020883843.1| (uncharacterized protein LOC9317677 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 85.1149 bits (209), Expect = 4.152e-15
Identity = 70/222 (31.53%), Postives = 98/222 (44.14%), Query Frame = 0
Query:   42 SCRRFSLPSLFPRALPTSSSSPSSFASSSFFSSSFTSSSDSHVTPNP-PIPSSPPGGEGNFFSLRRL--------RAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLA-----ALMVFPTL 249
            S R FS+P+         S  P SF+         TS S +H   N     S P   EG      R+           L  L+  G +G+L+YGI+N +YY+ A  ++W      V P  +P  +G  AAA                      RFLKV+AM WAGSQVTK +R+GGA+ LAP V R + +   K +  S+ +    L+      ALM+F  +
Sbjct:   17 SLRTFSIPA------NGQSLLPYSFSVVHHSHRLVTSFSHNHNATNKSDAESKPSYDEGEMLDKNRISRRNPFVSEKLLKKLKRYGVSGILSYGILNTVYYSKAFLLVWF----YVAP--APGKMGYLAAA---------------------ERFLKVMAMVWAGSQVTKLIRIGGAVALAPIVDRGLSWFTVKCKFESQGKAFGALVGICLGLALMLFVVV 205          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|297325600|gb|EFH56020.1| (predicted protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 83.5741 bits (205), Expect = 9.566e-15
Identity = 66/208 (31.73%), Postives = 93/208 (44.71%), Query Frame = 0
Query:   55 ALPTSSSSPSSFASSSFFSSSFTSSSDSHVTPNPPIPSSPPGGEGNFFSLRRL--------RAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLA-----ALMVFPTL 249
            +LP  S  P SF S    S    +S   + T      S P   EG      R+           L  L+  G +G+L+YGI+N +YY+ A  ++W  V     P  +P  +G  AAA                      RFLKV+AM WAGSQVTK +R+GGA+ LAP V R + +   K +  S+ +    L+      ALM+F  +
Sbjct:   12 SLPPQSLLPYSF-SVVHHSHRLVTSFSHNATNKSDAESKPSYDEGEMLDKNRISRRNPFVSEKLLKKLKRYGVSGILSYGILNTVYYSKAFLLVWFYV----AP--APGKMGYLAAA---------------------ERFLKVMAMVWAGSQVTKLIRIGGAVALAPIVDRGLSWFTVKCKFESQGKAFGALVGICLGLALMLFVVV 191          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|729401619|ref|XP_010554492.1| (PREDICTED: uncharacterized protein LOC104824199 isoform X3 [Tarenaya hassleriana])

HSP 1 Score: 81.6481 bits (200), Expect = 1.361e-14
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 0
Query:  111 LAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVF 251
            L  L++ G +G+L+YG++N +YYT+A  ++W  V     P  +P  +G  AA                       RFLKV+AM WAGSQVTK +R GGA+ LAP V R + +   K +  S+ +    ++   + F  ++F
Sbjct:   25 LEKLKKYGISGVLSYGLLNTVYYTIAFLLVWFYV----AP--APGRMGYVAAVE---------------------RFLKVMAMVWAGSQVTKLIRAGGALALAPFVDRGLTWFTLKFKFESQGKAFMAIVGVCLGFAVMLF 138          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|1032294390|gb|OAP08716.1| (hypothetical protein AXX17_AT2G35570 [Arabidopsis thaliana])

HSP 1 Score: 82.8037 bits (203), Expect = 3.071e-14
Identity = 75/233 (32.19%), Postives = 104/233 (44.64%), Query Frame = 0
Query:   33 RRASLPL--KHSCRRFSLPSLFPRALPTSSSSPSSFASSSFFSSSFTSSSDSH-VTPNPPIPSSPPGGEGNFFSLRRL--------RAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLL-----AALMVFPTL 249
             R SLPL  K S R FS+ +   R   T S  P  F  S F  S    +S SH V+      +     EG      R+           L  L+  G +G+L+YG++N +YY+ A  ++W      V P  +P  +G  AAA                      RFLKV+AM WAGSQVTK +R+GGA+ LAP V R + +   K    S+ +    L+      ALM+F  +
Sbjct:    7 HRFSLPLPPKCSLRTFSVLANGKR---TQSLLPHHF--SVFNQSHRLVTSLSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTVYYSTAFLLVWF----YVAP--APGKMGYLAAA---------------------ERFLKVMAMVWAGSQVTKLIRIGGAVALAPIVDRGLSWFTVKCNFESQGKAFGALVGICLGVALMLFIVV 207          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|901814989|gb|KMZ69346.1| (hypothetical protein ZOSMA_216G00160 [Zostera marina])

HSP 1 Score: 82.8037 bits (203), Expect = 3.163e-14
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 0
Query:  114 LRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVF 251
            L++ G AG+L+YG++N  YY  A  ++W  V     P  +P+ LG  AAA                      RF+K++AM WAGSQVTK LR+GGA+ LAP V++ + +   K +  S  +    ++   + F   VF
Sbjct:   99 LKQYGVAGVLSYGLLNTFYYLTAFIVVWFYV----AP--TPAGLGYVAAAE---------------------RFIKIMAMVWAGSQVTKLLRIGGALALAPLVAKGLSWFTTKFKFESTGKAFGFIVGLCITFGISVF 209          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|79603216|ref|NP_973635.2| (Gag-Pol polyprotein/retrotransposon [Arabidopsis thaliana] >gi|49823514|gb|AAT68740.1| hypothetical protein At2g38695 [Arabidopsis thaliana] >gi|55740605|gb|AAV63895.1| hypothetical protein At2g38695 [Arabidopsis thaliana] >gi|330254477|gb|AEC09571.1| Gag-Pol polyprotein/retrotransposon [Arabidopsis thaliana])

HSP 1 Score: 82.4185 bits (202), Expect = 4.129e-14
Identity = 75/233 (32.19%), Postives = 104/233 (44.64%), Query Frame = 0
Query:   33 RRASLPL--KHSCRRFSLPSLFPRALPTSSSSPSSFASSSFFSSSFTSSSDSH-VTPNPPIPSSPPGGEGNFFSLRRL--------RAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLL-----AALMVFPTL 249
             R SLPL  K S R FS+ +   R   T S  P  F  S F  S    +S SH V+      +     EG      R+           L  L+  G +G+L+YG++N +YY+ A  ++W      V P  +P  +G  AAA                      RFLKV+AM WAGSQVTK +R+GGA+ LAP V R + +   K    S+ +    L+      ALM+F  +
Sbjct:    7 HRFSLPLPPKCSLRTFSVLANGKR---TQSLLPHHF--SVFNQSHRLVTSLSHNVSNKSDAEAERSCDEGEMLDKNRISKKNPFVSEELLKKLKRYGLSGILSYGLLNTVYYSTAFLLVWF----YVAP--APGKMGYLAAA---------------------ERFLKVMAMVWAGSQVTKLIRIGGAVALAPIVDRGLSWFTVKCNFESQGKAFGALVGICLGMALMLFIVV 207          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|729401613|ref|XP_010554490.1| (PREDICTED: uncharacterized protein LOC104824199 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 81.6481 bits (200), Expect = 7.516e-14
Identity = 47/142 (33.10%), Postives = 73/142 (51.41%), Query Frame = 0
Query:  110 ALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVF 251
             L  L++ G +G+L+YG++N +YYT+A  ++W      V P  +P  +G  AA                       RFLKV+AM WAGSQVTK +R GGA+ LAP V R + +   K +  S+ +    ++   + F  ++F
Sbjct:  100 VLEKLKKYGISGVLSYGLLNTVYYTIAFLLVWF----YVAP--APGRMGYVAAV---------------------ERFLKVMAMVWAGSQVTKLIRAGGALALAPFVDRGLTWFTLKFKFESQGKAFMAIVGVCLGFAVMLF 214          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|848899566|ref|XP_012849935.1| (PREDICTED: uncharacterized protein LOC105969707 [Erythranthe guttata])

HSP 1 Score: 80.8777 bits (198), Expect = 1.094e-13
Identity = 54/170 (31.76%), Postives = 78/170 (45.88%), Query Frame = 0
Query:   75 SFTSSSDSH-----VTPNPPIPSSPPGGEGNFFSLRRLRAALAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVL 239
            SF +SS++H        +         G+  FF    L+  L  L+  G +G+L+YG++N  YY     ++W  V     P  SP  +G  AA                       RFLKV+AM WAGSQVTK +R GGA+ LAP V R + +   K   +S+ +  A +
Sbjct:   46 SFANSSNTHRPESSDFDSSSEEKQGSNGKDKFFQANSLKEILTKLKRYGVSGILSYGLLNTAYYLTTFLVVWFYV----AP--SPGRMGYLAAV---------------------ERFLKVMAMVWAGSQVTKIIRAGGALALAPFVDRGLSWFTLKFGFKSQGKAFATI 188          
BLAST of EWM23381.1 vs. NCBI_GenBank
Match: gi|944054794|gb|KQJ90432.1| (hypothetical protein BRADI_4g31470 [Brachypodium distachyon])

HSP 1 Score: 81.2629 bits (199), Expect = 1.378e-13
Identity = 48/146 (32.88%), Postives = 72/146 (49.32%), Query Frame = 0
Query:  111 LAALRETGSAGLLAYGIVNALYYTVAITIIWLCVDGDVEPLLSPSALGATAAAAGTGKAAMSAATSAPSLRLLSTRFLKVVAMAWAGSQVTKPLRVGGAILLAPAVSRLMGYTERKLQLRSKRQTLAVLLAALMVFPTLVFAGLLI 256
            L  L+  G+AG+L+YG++N +YY     ++W      + P  +P  +G  AA                       RF+K++AM WAGSQVTK LR GGA+ LAP V R + +   K   +S+ +  A ++        LVF GL +
Sbjct:  108 LEKLKRYGAAGVLSYGLLNTVYYVTTFLLVWF----HLSP--APGRMGYAAAV---------------------ERFIKLMAMVWAGSQVTKVLRAGGALALAPFVDRGLTWFTVKFNFQSEGKAFATIVGLCFGLAALVFFGLTV 226          
The following BLAST results are available for this feature:
BLAST of EWM23381.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104390|gb|EWM23381.1|0.000e+0100.00hypothetical protein Naga_100472g4 [Nannochloropsi... [more]
gi|1190976080|ref|XP_020883843.1|4.152e-1531.53uncharacterized protein LOC9317677 [Arabidopsis ly... [more]
gi|297325600|gb|EFH56020.1|9.566e-1531.73predicted protein [Arabidopsis lyrata subsp. lyrat... [more]
gi|729401619|ref|XP_010554492.1|1.361e-1433.33PREDICTED: uncharacterized protein LOC104824199 is... [more]
gi|1032294390|gb|OAP08716.1|3.071e-1432.19hypothetical protein AXX17_AT2G35570 [Arabidopsis ... [more]
gi|901814989|gb|KMZ69346.1|3.163e-1434.06hypothetical protein ZOSMA_216G00160 [Zostera mari... [more]
gi|79603216|ref|NP_973635.2|4.129e-1432.19Gag-Pol polyprotein/retrotransposon [Arabidopsis t... [more]
gi|729401613|ref|XP_010554490.1|7.516e-1433.10PREDICTED: uncharacterized protein LOC104824199 is... [more]
gi|848899566|ref|XP_012849935.1|1.094e-1331.76PREDICTED: uncharacterized protein LOC105969707 [E... [more]
gi|944054794|gb|KQJ90432.1|1.378e-1332.88hypothetical protein BRADI_4g31470 [Brachypodium d... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7312rna7312Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications