rna7309, rna7309 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7309
Unique Name	rna7309
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	422
Alignment location	CM002471.1:298752..300304 -

Link to JBrowse

Properties


Property Name	Value
Product	RNA helicase, DEAD-box type
Orig transcript id	gnl\|cribi\|Naga_100472g7.10261.mrna
Orig protein id	gnl\|cribi\|Naga_100472g7.10261
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:298752..300304 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100472g7	gene7074	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7309	rna7309-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23379.1	cds7292	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:298752..300304-
coding sequence from alignment at CM002471.1:298752..300304-

mRNA sequence

>rna7309 ID=rna7309|Name=rna7309|organism=Nannochloropsis gaditana|type=mRNA|length=422bp
AGGAGCAGTGAATGACACGTGGTCCCTCACCGACGAGGAAAGGCTTCGAT
TTGCCTCCTCTTTGTCCCATAACTCCACGAACATGGGCTCACCACGCCCT
CTTCCTCCCTTCACAGGCGCCCCCGTCCTCCCCCGTCCCTCCTCCCACGT
TCCCGCGGCCCGTGGCCCATGACCCCCTGGTCCTCCCGCGCAGGCGGCCG
AAGCTTGGAGGAGGAGAGCCTGCGGGTGGACCTGGCCCTCAAATTTCGCG
AAAAAGAGATGTCCCTCCTCCAGAGCCTTGTCGGCGGCCTGCGGACGTGG
ACGGCGGCCCTCTCGGAGATGGGGGTGGTGCTCAAACTCGTGCTCGCCGG
CGCCGGCGGCTTGGTCTTCCTCTGGGGGGGGAGCGTCCTTCGTATGGGCC
GTGGTCAGGCCCTTTTGGGGGG

protein sequence of rna7309

>rna7309-protein ID=rna7309-protein|Name=rna7309|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MGKDELSMKEEEKEARERKLRKKAKKESKRAAELLKISEAETAETEVKEP
ADKLLNGTTNEKQDEQSSILRLSKEERKRAKKEKKKQEKIAAATSHATPL
PSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPP
DLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLER
IRKAGAPDGGGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQ
GFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGG
EDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEA
SRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARG
LDIPDVEVVINYSFPLTIEDYVHR

mRNA from alignment at CM002471.1:298752..300304-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7309 ID=rna7309|Name=rna7309|organism=Nannochloropsis gaditana|type=mRNA|length=1553bp|location=Sequence derived from alignment at CM002471.1:298752..300304- (Nannochloropsis gaditana)
ATGGGAAAAGATGAGTTATCGATGAAAGAAGAAGAAAAAGAAGCTAGGGA
GCGAAAGCTGCGCAAGAAGGCGAAGAAGGAATCGAAACGGGCGGCCGAAC
TGCTCAAAATATCTGAGGCCGAGACCGCGGAGACAGAGGTCAAGGAGCCC
GCCGACAAGCTCCTGAACGGCACGACGAACGAGAAGCAGGATGAGCAATC
CTCAATTTTGCGCCTGAGCAAAGAGGAGAGGAAGCGTGCCAAGAAAGAGA
AGAAAAAGCAAGAGAAAATTGCCGCCGCCACGTCCCATGCCACCCCACTC
CCTTCCACCCCGTGCACCGCCGACGCCCCCCACCCCTTGAGCAAGAGCGA
GGCCCAGGCCTGGTGGGAGGAGAACGAGATCTTGGTCTCGGGCCCGGGGT
GCGACGCCTTCCTCCCCACCCTCTCCTTCGCGGGGGTGGGTTTCCCCCCC
GACTTGCTGAAGTGCACCGAGGGCTTCGCCCGCCCTACCCCCATCCAGGC
TCAGTGCTGGCCCGTCCTGATGGGCGGCAGAGACATTATCGGCATCGCCG
AGACCGGCTCCGGGAAGACGCTCACTTTCGTCCTCCCCGGCTTGGAGCGC
ATCCGCAAGGCAGGGGCCCCGGACGGTGGGCGCGCGGGGCATGTCCCGCG
CATGTTGGTGGTTGCCCCCACCCGGGAGTTGGCGATGCAGAGCGCGGAAG
TGATCGACGGCGTGGTGGAGGGCTCGGGTCTGCGCAGCATCTGTCTCTTT
GGCGGGGTGCCCAAACAGGAGCAGCGCCAGGCCTTAAGGGGGGGGAGTGG
ACATTCTGGTGGCGACGCCGGGGCGGCTGGCAGACTTGATGGAGGAGGGG
GAGTGCGACCTCTCCCGGGTATCCTACTTGGTCTTGGACGAGGCGGACCG
CATGCTCGACCAGGGCTTCGAGCAGGCCATCCGCGGGATCGTGAGCCACT
GTGTGCCCCGCGGCCGGCGGCAGACGGCGTTGTTCTCCGCCACCTGGCCC
GTGGCCATCCAGGCATTGGCGGGAGAGTTCCTGGAAAATCCGGTTAAGGT
GACGATCGGAGGGGAGGATTTGAGCAGTAACAAGCGGGTGCAGCAGGTGG
TGGAGGTGGTGGGAGAGTTCGAGCGGGAGGGCCGGCTGCGGGGGCTTCTG
ACGCAGTACCACGGTCGGCGCGACAACCGGGTTTTGGTCTTCGCGCTCTA
CAAGAAAGTGAGTGGGAAGGACGGAGGTCAGGACCTGGCACCTGGGACCC
GCCCTTTGACCTTCCCTCCCTCCCTCCCTCCCATCCTTCCTTCCTTCCTC
CCTTCCTCCCTCCTGTTGTCAGGAAGCGTCCCGATTGGAGCTGAATTTGC
AGCGGCAGGGGTACAAGTGCTTAGGCATTCATGGAGACAAGAGCCAGAGC
GATCGCATCGCCGCCATCGAGAAATTCAAGACGAAGGAGGTCCCCCTGTT
GGTGGCCACGGACGTCGCTGCCCGGGGCCTGGACATCCCCGACGTGGAGG
TGGTGATAAACTACTCCTTCCCTTTGACCATCGAAGACTACGTGCACAGG
TAA

Coding sequence (CDS) from alignment at CM002471.1:298752..300304-

>rna7309 ID=rna7309|Name=rna7309|organism=Nannochloropsis gaditana|type=CDS|length=3825bp|location=Sequence derived from alignment at CM002471.1:298752..300304- (Nannochloropsis gaditana)
GAAGCGTCCCGATTGGAGCTGAATTTGCAGCGGCAGGGGTACAAGTGCTT
AGGCATTCATGGAGACAAGAGCCAGAGCGATCGCATCGCCGCCATCGAGA
AATTCAAGACGAAGGAGGTCCCCCTGTTGGTGGCCACGGACGTCGCTGCC
CGGGGCCTGGACATCCCCGACGTGGAGGTGGTGATAAACTACTCCTTCCC
TTTGACCATCGAAGACTACGTGCACAGGTAAGGGGGGGAGTGGACATTCT
GGTGGCGACGCCGGGGCGGCTGGCAGACTTGATGGAGGAGGGGGAGTGCG
ACCTCTCCCGGGTATCCTACTTGGTCTTGGACGAGGCGGACCGCATGCTC
GACCAGGGCTTCGAGCAGGCCATCCGCGGGATCGTGAGCCACTGTGTGCC
CCGCGGCCGGCGGCAGACGGCGTTGTTCTCCGCCACCTGGCCCGTGGCCA
TCCAGGCATTGGCGGGAGAGTTCCTGGAAAATCCGGTTAAGGTGACGATC
GGAGGGGAGGATTTGAGCAGTAACAAGCGGGTGCAGCAGGTGGTGGAGGT
GGTGGGAGAGTTCGAGCGGGAGGGCCGGCTGCGGGGGCTTCTGACGCAGT
ACCACGGTCGGCGCGACAACCGGGTTTTGGTCTTCGCGCTCTACAAGAAA
ATGGGAAAAGATGAGTTATCGATGAAAGAAGAAGAAAAAGAAGCTAGGGA
GCGAAAGCTGCGCAAGAAGGCGAAGAAGGAATCGAAACGGGCGGCCGAAC
TGCTCAAAATATCTGAGGCCGAGACCGCGGAGACAGAGGTCAAGGAGCCC
GCCGACAAGCTCCTGAACGGCACGACGAACGAGAAGCAGGATGAGCAATC
CTCAATTTTGCGCCTGAGCAAAGAGGAGAGGAAGCGTGCCAAGAAAGAGA
AGAAAAAGCAAGAGAAAATTGCCGCCGCCACGTCCCATGCCACCCCACTC
CCTTCCACCCCGTGCACCGCCGACGCCCCCCACCCCTTGAGCAAGAGCGA
GGCCCAGGCCTGGTGGGAGGAGAACGAGATCTTGGTCTCGGGCCCGGGGT
GCGACGCCTTCCTCCCCACCCTCTCCTTCGCGGGGGTGGGTTTCCCCCCC
GACTTGCTGAAGTGCACCGAGGGCTTCGCCCGCCCTACCCCCATCCAGGC
TCAGTGCTGGCCCGTCCTGATGGGCGGCAGAGACATTATCGGCATCGCCG
AGACCGGCTCCGGGAAGACGCTCACTTTCGTCCTCCCCGGCTTGGAGCGC
ATCCGCAAGGCAGGGGCCCCGGACGGAAGCGTCCCGATTGGAGCTGAATT
TGCAGCGGCAGGGGTACAAGTGCTTAGGCATTCATGGAGACAAGAGCCAG
AGCGATCGCATCGCCGCCATCGAGAAATTCAAGACGAAGGAGGTCCCCCT
GTTGGTGGCCACGGACGTCGCTGCCCGGGGCCTGGACATCCCCGACGTGG
AGGTGGTGATAAACTACTCCTTCCCTTTGACCATCGAAGACTACGTGCAC
AGGTAAGGGGGGGAGTGGACATTCTGGTGGCGACGCCGGGGCGGCTGGCA
GACTTGATGGAGGAGGGGGAGTGCGACCTCTCCCGGGTATCCTACTTGGT
CTTGGACGAGGCGGACCGCATGCTCGACCAGGGCTTCGAGCAGGCCATCC
GCGGGATCGTGAGCCACTGTGTGCCCCGCGGCCGGCGGCAGACGGCGTTG
TTCTCCGCCACCTGGCCCGTGGCCATCCAGGCATTGGCGGGAGAGTTCCT
GGAAAATCCGGTTAAGGTGACGATCGGAGGGGAGGATTTGAGCAGTAACA
AGCGGGTGCAGCAGGTGGTGGAGGTGGTGGGAGAGTTCGAGCGGGAGGGC
CGGCTGCGGGGGCTTCTGACGCAGTACCACGGTCGGCGCGACAACCGGGT
TTTGGTCTTCGCGCTCTACAAGAAAATGGGAAAAGATGAGTTATCGATGA
AAGAAGAAGAAAAAGAAGCTAGGGAGCGAAAGCTGCGCAAGAAGGCGAAG
AAGGAATCGAAACGGGCGGCCGAACTGCTCAAAATATCTGAGGCCGAGAC
CGCGGAGACAGAGGTCAAGGAGCCCGCCGACAAGCTCCTGAACGGCACGA
CGAACGAGAAGCAGGATGAGCAATCCTCAATTTTGCGCCTGAGCAAAGAG
GAGAGGAAGCGTGCCAAGAAAGAGAAGAAAAAGCAAGAGAAAATTGCCGC
CGCCACGTCCCATGCCACCCCACTCCCTTCCACCCCGTGCACCGCCGACG
CCCCCCACCCCTTGAGCAAGAGCGAGGCCCAGGCCTGGTGGGAGGAGAAC
GAGATCTTGGTCTCGGGCCCGGGGTGCGACGCCTTCCTCCCCACCCTCTC
CTTCGCGGGGGTGGGTTTCCCCCCCGACTTGCTGAAGTGCACCGAGGGCT
TCGCCCGCCCTACCCCCATCCAGGCTCAGTGCTGGCCCGTCCTGATGGGC
GGCAGAGACATTATCGGCATCGCCGAGACCGGCTCCGGGAAGACGCTCAC
TTTCGTCCTCCCCGGCTTGGAGCGCATCCGCAAGGCAGGGGCCCCGGACG
GAAGCGTCCCGATTGGAGCTGAATTTGCAGCGGCAGGGGTACAAGTGCTT
AGGCATTCATGGAGACAAGAGCCAGAGCGATCGCATCGCCGCCATCGAGA
AATTCAAGACGAAGGAGGTCCCCCTGTTGGTGGCCACGGACGTCGCTGCC
CGGGGCCTGGACATCCCCGACGTGGAGGTGGTGATAAACTACTCCTTCCC
TTTGACCATCGAAGACTACGTGCACAGGTAAGGGGGGGAGTGGACATTCT
GGTGGCGACGCCGGGGCGGCTGGCAGACTTGATGGAGGAGGGGGAGTGCG
ACCTCTCCCGGGTATCCTACTTGGTCTTGGACGAGGCGGACCGCATGCTC
GACCAGGGCTTCGAGCAGGCCATCCGCGGGATCGTGAGCCACTGTGTGCC
CCGCGGCCGGCGGCAGACGGCGTTGTTCTCCGCCACCTGGCCCGTGGCCA
TCCAGGCATTGGCGGGAGAGTTCCTGGAAAATCCGGTTAAGGTGACGATC
GGAGGGGAGGATTTGAGCAGTAACAAGCGGGTGCAGCAGGTGGTGGAGGT
GGTGGGAGAGTTCGAGCGGGAGGGCCGGCTGCGGGGGCTTCTGACGCAGT
ACCACGGTCGGCGCGACAACCGGGTTTTGGTCTTCGCGCTCTACAAGAAA
ATGGGAAAAGATGAGTTATCGATGAAAGAAGAAGAAAAAGAAGCTAGGGA
GCGAAAGCTGCGCAAGAAGGCGAAGAAGGAATCGAAACGGGCGGCCGAAC
TGCTCAAAATATCTGAGGCCGAGACCGCGGAGACAGAGGTCAAGGAGCCC
GCCGACAAGCTCCTGAACGGCACGACGAACGAGAAGCAGGATGAGCAATC
CTCAATTTTGCGCCTGAGCAAAGAGGAGAGGAAGCGTGCCAAGAAAGAGA
AGAAAAAGCAAGAGAAAATTGCCGCCGCCACGTCCCATGCCACCCCACTC
CCTTCCACCCCGTGCACCGCCGACGCCCCCCACCCCTTGAGCAAGAGCGA
GGCCCAGGCCTGGTGGGAGGAGAACGAGATCTTGGTCTCGGGCCCGGGGT
GCGACGCCTTCCTCCCCACCCTCTCCTTCGCGGGGGTGGGTTTCCCCCCC
GACTTGCTGAAGTGCACCGAGGGCTTCGCCCGCCCTACCCCCATCCAGGC
TCAGTGCTGGCCCGTCCTGATGGGCGGCAGAGACATTATCGGCATCGCCG
AGACCGGCTCCGGGAAGACGCTCACTTTCGTCCTCCCCGGCTTGGAGCGC
ATCCGCAAGGCAGGGGCCCCGGACG

Synonyms

Publications