EWM23379.1, cds7292 (CDS) Nannochloropsis gaditana

Overview
NameEWM23379.1
Unique Namecds7292
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:299680..300304 -
Alignment locationCM002471.1:299098..299516 -
Alignment locationCM002471.1:298752..298982 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23379.1
ProductRNA helicase, DEAD-box type
Orig transcript idgnl|cribi|Naga_100472g7.10261.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:299680..300304 -
CM002471.1supercontigCM002471.1:299098..299516 -
CM002471.1supercontigCM002471.1:298752..298982 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|585104388|gb|EWM23379.1| (RNA helicase, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 864.759 bits (2233), Expect = 0.000e+0
Identity = 424/424 (100.00%), Postives = 424/424 (100.00%), Query Frame = 0
Query:    1 MGKDELSMKEEEKEARERKLRKKAKKESKRAAELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSILRLSKEERKRAKKEKKKQEKIAAATSHATPLPSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERIRKAGAPDGGGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            MGKDELSMKEEEKEARERKLRKKAKKESKRAAELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSILRLSKEERKRAKKEKKKQEKIAAATSHATPLPSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERIRKAGAPDGGGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR
Sbjct:    1 MGKDELSMKEEEKEARERKLRKKAKKESKRAAELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSILRLSKEERKRAKKEKKKQEKIAAATSHATPLPSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERIRKAGAPDGGGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|553180389|ref|XP_005853396.1| (dead box rna helicase [Nannochloropsis gaditana CCMP526] >gi|422295668|gb|EKU22967.1| dead box rna helicase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 660.603 bits (1703), Expect = 0.000e+0
Identity = 383/478 (80.13%), Postives = 389/478 (81.38%), Query Frame = 0
Query:    1 MGKDELSMKEEEKEARERKLRKKAKKESKRAAELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSILRLSKEERKRAKKEKKKQEKIAAATSHATPLPSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERIRKAGAPDGGGVD----ILVATP--------------------------------------------------GRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            MGKDELSMKEEEKEARERKLRKKAKKESKRAAELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSI RLSKEERKRAKKEKKKQEKIAAATSHATPLPSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTF+LPGLERIRKAGAPDGG       +LV  P                                                  GRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKK                      ++++       KFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR
Sbjct:   59 MGKDELSMKEEEKEARERKLRKKAKKESKRAAELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSISRLSKEERKRAKKEKKKQEKIAAATSHATPLPSTPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFILPGLERIRKAGAPDGGRAGHVPRMLVVAPTRELAMQSAEVIDGVVEGSGLRSICLFGGVPKQEQRQALRGGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKK-----------------AFMETRARATASPPSTKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 519          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|673028036|ref|XP_008867979.1| (hypothetical protein H310_05119 [Aphanomyces invadans] >gi|574476752|gb|ETW03750.1| hypothetical protein H310_05119 [Aphanomyces invadans])

HSP 1 Score: 382.489 bits (981), Expect = 2.490e-125
Identity = 216/474 (45.57%), Postives = 285/474 (60.13%), Query Frame = 0
Query:   17 ERKLRKKAKKESKRAA-ELLKISEAETAETEVKEPADKLLNGTTNEKQDEQSSILRLSKEERKRAKKEKKKQEKIAAATS--HATPLPS-----------TPCTADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGL----ERIRKAG----------APD--------------------------GG------------GVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            ++KL KK +KE KR   E   +S+  TA+ +V E         + +++ ++    R   E    AK  KK +  ++  ++  +  PLPS           +P TA     ++ ++  A+ ++N++ +SG  C  + P LSF  + FP  ++  T GFA+PTPIQ+QCWP+L  GRDIIGIA+TGSGKTL F +PGL    ++++K            AP                           GG            GV ++VATPGRL DLMEE  C L  V+Y VLDEADRMLD GFE+ IR I+  C P   RQ A+FSATWP +IQ LA EFL +PVKVTIG EDLS++  V Q+VEVV EF R+ ++ GLL +YH  R NRVLVF LYKKEA R+E  LQR+G+ C  IHGDK Q  R+ A++ FK+ ++PLL+ATDVAARGLDIPDVE V+NYSFPLTIEDYVHR
Sbjct:    5 DKKLAKKLRKEKKRQEREAAAVSDDMTADDDVVE---------STKEKKQKKDKKRKKAEGDDDAKPSKKAKSTVSDFSNGPYQQPLPSDKSFVKSFYVESPVTA----AMTDADVDAFHQQNQMTMSGNHC-LYRPVLSFKEINFPKHMMTSTTGFAKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFAIPGLVHISDQVKKNANLKGPIMLVVAPTRELAIQCADVISVAGTAASISSICIYGGVPKHEQKRQLKQGVHVVVATPGRLKDLMEEKACSLKHVTYCVLDEADRMLDDGFEKDIRLIIGGCHPE--RQIAMFSATWPQSIQKLAHEFLTDPVKVTIGSEDLSASANVTQIVEVVDEFGRDAKIDGLLRKYHSSRKNRVLVFVLYKKEAVRVEQMLQRKGWSCTAIHGDKGQQQRMEALDAFKSGQIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHR 462          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|669152504|ref|XP_008611814.1| (hypothetical protein SDRG_07740 [Saprolegnia diclina VS20] >gi|530736700|gb|EQC34942.1| hypothetical protein SDRG_07740 [Saprolegnia diclina VS20])

HSP 1 Score: 382.104 bits (980), Expect = 3.685e-125
Identity = 197/364 (54.12%), Postives = 240/364 (65.93%), Query Frame = 0
Query:  113 LSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERI--------RKAG------APD--------------------------GG------------GVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            LS     A+ +EN + +SG  C  + P LSFA   FP  +LK  E FA+PTPIQ+QCWP+L  GRDIIGIA+TGSGKTL F +PGL  I        +K G      AP                           GG            GV ++VATPGRL DL++E  C L+ VSY+VLDEADRMLD GFE+ IR I++ C     RQ A+FSATWP +IQ LA EFLE+PVKVTIG +DL++++ V Q+VEVV EF R+ +L GLL +YHG R NRVLVF LYKKEA R+E  LQR+G+KC  IHGDK Q+ R+ A+E FK+  +PLL+ATDVAARGLDIPDVE V+NYSFPLTIEDYVHR
Sbjct:   97 LSNEAVDAFHQENHMTMSGNHC-LYRPILSFADAPFPKAMLKSCENFAKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFSVPGLVHITDQLKTNPKKKGPIMLVVAPTRELAVQCADVIAVAGKSVNINSLCLYGGVPKHEQKRALKAGVQVVVATPGRLKDLVQEKSCSLANVSYIVLDEADRMLDDGFEKDIRLIMAEC--HAERQIAMFSATWPQSIQKLAHEFLEDPVKVTIGSDDLAASENVTQIVEVVDEFGRDAKLDGLLKKYHGSRKNRVLVFVLYKKEAVRVETMLQRKGWKCTAIHGDKGQAQRMEALEAFKSGTIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHR 457          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|1173933862|gb|OQR85422.1| (DEAD/DEAH box RNA helicase [Achlya hypogyna])

HSP 1 Score: 375.941 bits (964), Expect = 1.173e-122
Identity = 192/364 (52.75%), Postives = 238/364 (65.38%), Query Frame = 0
Query:  113 LSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGL--------------------------------ERIRKAGAP--------DGG------------GVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            L+  +  A+ +E+ + +SG  C  + P LSFA   FP  +LK  E FA+PTPIQ+QCWP+L  GRDIIGIA+TGSGKTL F +PGL                                E I +AG           GG            GV ++VATPGRL DL++E  C L+ V+Y+VLDEADRMLD GFE+ IR I+  C     RQ A+FSATWP +IQ LA EFLE+PVKVTIG +DL++++ V Q+VEVV EF R+ +L GLL +YHG R NRVLVF LYKKEA R+E  L R+G+KC  IHGDK Q+ R+ A+E FK+ + PLL+ATDVAARGLDIPDVE V+NYSFPLTIEDYVHR
Sbjct:  103 LTNEQVDAFHQEHHMTMSGNKC-LYRPILSFADATFPKAMLKSCENFAKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFSVPGLVHIADQLKANKSKKGPIMLVVAPTRELAVQCAEVISEAGKAINISSLCLYGGVPKHEQKRALKAGVQVVVATPGRLKDLVQEKSCSLANVTYVVLDEADRMLDDGFEKDIRLIMGEC--HSERQIAMFSATWPQSIQKLAHEFLEDPVKVTIGSDDLAASENVTQIVEVVDEFGRDAKLDGLLKKYHGSRKNRVLVFVLYKKEAVRVETMLMRKGWKCTAIHGDKGQAQRMEALEAFKSGKTPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHR 463          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|698809674|ref|XP_009837866.1| (hypothetical protein H257_12387 [Aphanomyces astaci] >gi|574107124|gb|ETV72638.1| hypothetical protein H257_12387 [Aphanomyces astaci])

HSP 1 Score: 374.015 bits (959), Expect = 8.590e-122
Identity = 186/364 (51.10%), Postives = 235/364 (64.56%), Query Frame = 0
Query:  113 LSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGL----ERIRKAGAPDG------------------------------------------------GGVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            ++ ++  A+ + +++++SG  C  + P L+F  V FP  ++  T GFA PTPIQ+QCWP+L  GRDIIGIA+TGSGKTL F +PGL    ++++K  +  G                                                 GV ++VATPGRL DLMEE  C L  V+Y VLDEADRMLD GFE+ IR I+  C P   RQ A+FSATWP +IQ LA EFL NPVKVTIG EDLS++  V Q+VEVV EF R+ ++ GLL +YH  R NRVLVF LYKKEA R+E  LQR+G+ C  IHGDK Q  R+ A++ FK+ ++PLL+ATDVAARGLDIPDVE V+NYSFPLTIEDYVHR
Sbjct:  116 MTDADVDAFHQRHQMIMSGNDC-LYRPLLTFKEVNFPKHMMTSTTGFATPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFAIPGLVHIADQVKKNASIKGPIMLVVAPTRELAIQCADVIAIAGNAASISSICIYGGVPKHEQKRQLKAGVHVVVATPGRLKDLMEERACSLKHVTYCVLDEADRMLDDGFEKDIRVIIGGCHPE--RQIAMFSATWPQSIQKLAHEFLTNPVKVTIGSEDLSASANVTQIVEVVDEFGRDAKIDGLLRKYHASRKNRVLVFVLYKKEAVRVEQMLQRKGWACTAIHGDKGQQQRMEALDAFKSGQIPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHR 476          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|1173938384|gb|OQR88668.1| (DEAD/DEAH box RNA helicase [Thraustotheca clavata])

HSP 1 Score: 370.933 bits (951), Expect = 7.851e-121
Identity = 193/370 (52.16%), Postives = 237/370 (64.05%), Query Frame = 0
Query:  107 ADAPHPLSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERI--------RKAG------APD--------------------------GG------------GVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            +D    LS  +  A+ +E+ + +SG  C  + P L FA V FP  +LK  E F +PTPIQ+QCWP+L  GRDIIGIA+TGSGKTL F +PGL  I        +K G      AP                           GG            GV ++VATPGRL DL++E  C L+ V+Y VLDEADRMLD GFE+ IR I+S C     RQ A+FSATWP +IQ LA EFL +PVKVTIG +DL++++ V Q+VEVV E+ R+ +L  LL +YH  R NRVLVF LYKKEA R+E  L R+G+KC  IHGDK Q  R+ A+E FKT +VPLL+ATDVAARGLDIPDVE V+NYSFPLTIEDYVHR
Sbjct:   86 SDKTASLSNQDVDAFHQEHHMTISGNNC-LYRPILKFADVNFPKAMLKSCENFTKPTPIQSQCWPILTSGRDIIGIAQTGSGKTLAFSVPGLVHITDQLKNNPKKKGPIMLVVAPTRELAVQCAEVISEAGKSVNITSLCLYGGVPKHEQKRALKAGVQVVVATPGRLKDLVQEKCCSLANVTYTVLDEADRMLDDGFEKDIRLIMSEC--HVERQIAMFSATWPQSIQKLAHEFLVDPVKVTIGSDDLAASENVTQIVEVVDEYGRDSKLDSLLKKYHSSRKNRVLVFVLYKKEAVRVETMLNRKGWKCTAIHGDKGQQQRMEALEAFKTGKVPLLIATDVAARGLDIPDVEFVLNYSFPLTIEDYVHR 452          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|953494248|emb|CEG43842.1| (dead box rna helicase [Plasmopara halstedii])

HSP 1 Score: 361.303 bits (926), Expect = 8.270e-117
Identity = 181/366 (49.45%), Postives = 234/366 (63.93%), Query Frame = 0
Query:  113 LSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERIRKAGAPD------------------------------------------GG------------GVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            ++ +E  A+ E N++++SG  C  + P LSF  V F    +K T+ F +PTPIQ+QCWP+L  GRDIIGIAETGSGKTL F +PGL  I  A  P+                                          GG            G+ ++VATPGRL DL+EE  C+LS+V+Y+VLDEADRMLD+GFE+ IR I+    P   RQ A+FSATWP +IQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R   LL +YH  R NR+L+F LYKKEA R+E  L ++G+ C+ IHGD++Q  R  A+E+FK+ EVPLL+ATDVAARGLDIP VE VINYSFPLTIEDYVHR
Sbjct:  121 MTDNEVSAFHEANQMILSGNNC-LYRPVLSFDDVTFESKFMKTTKDFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFAIPGL--IHIAAQPEVSHKHPGPRMLVVAPTRELAMQSSAVISEAGKNCGLKSICIYGGVPKQAQKKALRDGIHVVVATPGRLRDLLEERSCNLSKVTYVVLDEADRMLDEGFEKDIRAIIGSTHPE--RQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVIDDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWHCVAIHGDRTQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVINYSFPLTIEDYVHR 481          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|970655770|gb|KUF93881.1| (Gag-Pol polyprotein [Phytophthora nicotianae])

HSP 1 Score: 358.221 bits (918), Expect = 8.291e-116
Identity = 182/364 (50.00%), Postives = 234/364 (64.29%), Query Frame = 0
Query:  113 LSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERI------------------------------------RKAGAPD----GG------------GVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            ++  E  A+ E N++++SG  C  + P LSF  V F    +K T+GF +PTPIQ+QCWP+L  GRDIIGIAETGSGKTL F +PGL  I                                    +K G       GG            GV ++VATPGRL DL+EE  C+LS+V+++VLDEADRMLD+GFE+ IR I+    P   RQ A+FSATWP +IQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R   LL +YH  R NR+L+F LYKKEA R+E  L ++G+ C+ IHGD+SQ  R  A+E+FK+ EVPLL+ATDVAARGLDIP VE V+NYSFPLTIEDYVHR
Sbjct:  105 MTNEEVAAFHEANQMILSGNNC-LYRPVLSFDDVTFESKFMKTTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSPKYPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDGVHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHPE--RQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVIEDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVLNYSFPLTIEDYVHR 465          
BLAST of EWM23379.1 vs. NCBI_GenBank
Match: gi|675195217|ref|XP_008906493.1| (hypothetical protein PPTG_12047 [Phytophthora parasitica INRA-310] >gi|566023081|gb|ETI45992.1| hypothetical protein F443_09581 [Phytophthora parasitica P1569] >gi|567960376|gb|ETK85937.1| hypothetical protein L915_09376 [Phytophthora parasitica] >gi|567989113|gb|ETL39381.1| hypothetical protein L916_09280 [Phytophthora parasitica] >gi|568018321|gb|ETL92496.1| hypothetical protein L917_09213 [Phytophthora parasitica] >gi|568048769|gb|ETM45799.1| hypothetical protein L914_09237 [Phytophthora parasitica] >gi|568093409|gb|ETN08205.1| hypothetical protein PPTG_12047 [Phytophthora parasitica INRA-310] >gi|570326737|gb|ETO74685.1| hypothetical protein F444_09643 [Phytophthora parasitica P1976] >gi|570950509|gb|ETP15766.1| hypothetical protein F441_09513 [Phytophthora parasitica CJ01A1] >gi|570984190|gb|ETP43853.1| hypothetical protein F442_09486 [Phytophthora parasitica P10297] >gi|970637485|gb|KUF81492.1| DEAD-box ATP-dependent RNA helicase 5 [Phytophthora nicotianae])

HSP 1 Score: 358.607 bits (919), Expect = 8.842e-116
Identity = 182/364 (50.00%), Postives = 234/364 (64.29%), Query Frame = 0
Query:  113 LSKSEAQAWWEENEILVSGPGCDAFLPTLSFAGVGFPPDLLKCTEGFARPTPIQAQCWPVLMGGRDIIGIAETGSGKTLTFVLPGLERI------------------------------------RKAGAPD----GG------------GVDILVATPGRLADLMEEGECDLSRVSYLVLDEADRMLDQGFEQAIRGIVSHCVPRGRRQTALFSATWPVAIQALAGEFLENPVKVTIGGEDLSSNKRVQQVVEVVGEFEREGRLRGLLTQYHGRRDNRVLVFALYKKEASRLELNLQRQGYKCLGIHGDKSQSDRIAAIEKFKTKEVPLLVATDVAARGLDIPDVEVVINYSFPLTIEDYVHR 424
            ++  E  A+ E N++++SG  C  + P LSF  V F    +K T+GF +PTPIQ+QCWP+L  GRDIIGIAETGSGKTL F +PGL  I                                    +K G       GG            GV ++VATPGRL DL+EE  C+LS+V+++VLDEADRMLD+GFE+ IR I+    P   RQ A+FSATWP +IQ LA EFL +PVKVTIG ++L+++  V Q+VEV+ +  R+ R   LL +YH  R NR+L+F LYKKEA R+E  L ++G+ C+ IHGD+SQ  R  A+E+FK+ EVPLL+ATDVAARGLDIP VE V+NYSFPLTIEDYVHR
Sbjct:  120 MTNEEVAAFHEANQMILSGNNC-LYRPVLSFDDVTFESKFMKTTKGFDKPTPIQSQCWPILASGRDIIGIAETGSGKTLAFSIPGLIHIAAQPEVSPKYPGPRMLVVAPTRELAMQSSAVISEAGKKCGLKSICIYGGVPKHTQKKALRDGVHVVVATPGRLKDLVEERSCNLSKVTFVVLDEADRMLDEGFEKDIRAIIGSTHPE--RQIAMFSATWPQSIQKLAHEFLNDPVKVTIGSDELAASHNVTQIVEVIEDRARDARAHALLQKYHSSRKNRILLFVLYKKEADRVERMLHQRGWNCIAIHGDRSQQQRSEAVEQFKSGEVPLLIATDVAARGLDIPGVEYVLNYSFPLTIEDYVHR 480          
The following BLAST results are available for this feature:
BLAST of EWM23379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104388|gb|EWM23379.1|0.000e+0100.00RNA helicase, DEAD-box type [Nannochloropsis gadit... [more]
gi|553180389|ref|XP_005853396.1|0.000e+080.13dead box rna helicase [Nannochloropsis gaditana CC... [more]
gi|673028036|ref|XP_008867979.1|2.490e-12545.57hypothetical protein H310_05119 [Aphanomyces invad... [more]
gi|669152504|ref|XP_008611814.1|3.685e-12554.12hypothetical protein SDRG_07740 [Saprolegnia dicli... [more]
gi|1173933862|gb|OQR85422.1|1.173e-12252.75DEAD/DEAH box RNA helicase [Achlya hypogyna][more]
gi|698809674|ref|XP_009837866.1|8.590e-12251.10hypothetical protein H257_12387 [Aphanomyces astac... [more]
gi|1173938384|gb|OQR88668.1|7.851e-12152.16DEAD/DEAH box RNA helicase [Thraustotheca clavata][more]
gi|953494248|emb|CEG43842.1|8.270e-11749.45dead box rna helicase [Plasmopara halstedii][more]
gi|970655770|gb|KUF93881.1|8.291e-11650.00Gag-Pol polyprotein [Phytophthora nicotianae][more]
gi|675195217|ref|XP_008906493.1|8.842e-11650.00hypothetical protein PPTG_12047 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7309rna7309Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications