rna730, rna730 (mRNA) Nannochloropsis gaditana

Overview
Namerna730
Unique Namerna730
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length896
Alignment locationCM002456.1:277439..278481 +

Link to JBrowse

Properties
Property NameValue
Productcl- channel voltage-gated family protein
Orig transcript idgnl|cribi|Naga_100247g12.2326.mrna
Orig protein idgnl|cribi|Naga_100247g12.2326
GeneChloride
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:277439..278481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Chloridegene699Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna730rna730-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29943.1cds730Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna730 ID=rna730|Name=rna730|organism=Nannochloropsis gaditana|type=mRNA|length=896bp
TGCCGCCGCACGTTCGATCGCCTCAATTCTTTTCCCTACCCCGCCCCGCC
TACAATGCGCACAATTTGACCTAAATTTCTCTCTCTCTTTCATATTCACG
TAGGCCCTTTCTTATTTCCTGTGTCCAGCGCGCGTGTTTCTGCCTTTTCC
GGGCTTAAACGTGATTCACGGCCACCACTAAGCAGTCTCCAAGCCTATTC
CATCACTCCGCCATACAACATGTCTAACCTGACGAAGGAACAGAAGGACG
AGCTTGTCACTTCTTACGCAGCCCTGGCTCTCTATGATGGCGATTCTGAA
GTCTCCTCCGAGCAACTCAGTGCTTTCATCGCGGCAACCGGGAATGAAGT
AGAGCCTTACTGGCCCATGATTTTCTCCAAGTTCCTGGGGGGCAAAATGG
AGGATCTGATCACCAGTGTGGGCGGTGGGGGAGGGGGCGGGGCTGGTGCG
GCGCCCGCTCAGGACGCTTCCCCAGCCGCTGATGCCGGTGCCAAGAAGGA
GAAGAAGGAGGAGAAGGAAGAGGATGCAGACTTGGGCGGAGCTATGGATA
TGTTTGGGGGCGGCGACGGCTATTAAAGCGGTGTGGGCGCGTGTGACCGC
CCGCTGTGCGGTTACCAGCCCTCGTGGCCTTCGAAGGGTTCCCTCTCTGG
CGATTTTCGCGCTAATATGACCTTCAAGGCCCAGGGCGACGCTGACAGGT
GGCCATTGAGGAGGCCGGTTGGAGGGGTTGGGAGCTGAGGCAGGGGCTGT
GCGTGGTGCGGAAGCTGGATGGTCCTCATGTCCGGCGCTGGTCCCACGAA
GAGGGAGGCAGCAGAAAGAAAAAGACAGGGGGAAAAACCATCCAAGTGTC
TTGGCGCCGGCCATCGTCGTCCTTTCTTTCATGCATGGCCGGGGGA
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protein sequence of rna730

>rna730-protein ID=rna730-protein|Name=rna730|organism=Nannochloropsis gaditana|type=polypeptide|length=340bp
MAGLPSGRNQEAAGLTMAFSGKQRPRIRSSFPGLCPSPSLPSPTARTLSL
LPFGRCIVTTFTILFFSSLSAAFHLSSPPLSLRHHLGLPPFSFSPSLYIT
GCPRPSPSAHKPRRYLLTRTALSPDHPPRTSSSSPPPSFPITKLTRLVEK
LEEADIGLVPTTAFLMQAALIGLATGLSIITFKTLISVMETYTYGNFLTS
ALNAFGSGKPLSLAMAAIPALGGVCVGVIREAAREFPPGLSGQAEEVDKQ
KPLDVKRAVLKSLAAVATLGTGCSLGPEGPAVELGVVASRLVTLKASLEQ
RKQLLLAGAAAGVAAGFNAPIAGVFFALEIASAQGGGEGG
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mRNA from alignment at CM002456.1:277439..278481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna730 ID=rna730|Name=rna730|organism=Nannochloropsis gaditana|type=mRNA|length=1043bp|location=Sequence derived from alignment at CM002456.1:277439..278481+ (Nannochloropsis gaditana)
AGGCAGCCATCCGCCATGAAAGATGGCAGGACTACCATCGGGCCGTAATC
AAGAGGCCGCTGGGCTTACCATGGCATTCAGCGGAAAACAGCGCCCGCGG
ATAAGATCATCCTTTCCCGGATTGtgcccctcaccttccctcccctctcc
gacCGCCCGCActctctccttgcttcccTTTGGCCGTTGTATAGTCACCA
CATTCACCATCTTGTTTTTCTCCTCGTTGTCTGCTGCATTTCACCTCTCT
TCGCCGCCACTCTCCTTGCGGCATCACCTCGGTCTACCtccattctcctt
ctctccttccctttacATCACTGGatgcccccgcccttctccttccgccc
acAAGCCCCGCCGTTACCTTCTCACGCGCACTGCCCTCAGTCCTGATCAC
CCTCCCcgtacctcttcctcttctcctcctccttccttccccatcaccaA
GCTCACTCGCCTCGTCGAAAAGCTCGAAGAGGCCGACATCGGTCTCGTCC
CCACCACCGCATTTCTGATGCAGGCCGCCCTCATTGGACTGGCCACGGGC
CTGAGCATTATCACGTTCAAGACCCTCATTAGCGTGATGGAAACGTACAC
CTATGGAAATTTCCTGACCTCTGCCCTGAATGCCTTCGGTTCGGGGAAAC
CGCTGTccttggccatggccgccatTCCCGCCTTGGGTGGGGTTTGCGTG
GGTGTGATTCGGGAAGCCGCGCGTGAGTTCCCACCAGGCTTGAGCGGCCA
AGCCGAAGAGGTGGATAAACAGAAGCCCTTGGATGTGAAACGGGCCGTCC
TGAAGTCCTTGGCGGCCGTGGCGACCCTGGGGACCGGGTGCTCCCTCGGG
CCCGAAGGTCCCGCCGTGGAACTCGGCGTGGTGGCCTCCCGACTGGTCAC
GCTCAAGGCGAGCCTGGAGCAACGGAAGCAGTTGCTCCTGGCCGGGGCCG
CCgcgggggtggcggcgggcttCAATGCCCCTATTGCCGGGGTTTTCTTT
GCCTTGGAAATTGCCTCTGCccaaggtggaggggagggtgggg
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Coding sequence (CDS) from alignment at CM002456.1:277439..278481+

>rna730 ID=rna730|Name=rna730|organism=Nannochloropsis gaditana|type=CDS|length=1021bp|location=Sequence derived from alignment at CM002456.1:277439..278481+ (Nannochloropsis gaditana)
ATGGCAGGACTACCATCGGGCCGTAATCAAGAGGCCGCTGGGCTTACCAT
GGCATTCAGCGGAAAACAGCGCCCGCGGATAAGATCATCCTTTCCCGGAT
TGtgcccctcaccttccctcccctctccgacCGCCCGCActctctccttg
cttcccTTTGGCCGTTGTATAGTCACCACATTCACCATCTTGTTTTTCTC
CTCGTTGTCTGCTGCATTTCACCTCTCTTCGCCGCCACTCTCCTTGCGGC
ATCACCTCGGTCTACCtccattctccttctctccttccctttacATCACT
GGatgcccccgcccttctccttccgcccacAAGCCCCGCCGTTACCTTCT
CACGCGCACTGCCCTCAGTCCTGATCACCCTCCCcgtacctcttcctctt
ctcctcctccttccttccccatcaccaAGCTCACTCGCCTCGTCGAAAAG
CTCGAAGAGGCCGACATCGGTCTCGTCCCCACCACCGCATTTCTGATGCA
GGCCGCCCTCATTGGACTGGCCACGGGCCTGAGCATTATCACGTTCAAGA
CCCTCATTAGCGTGATGGAAACGTACACCTATGGAAATTTCCTGACCTCT
GCCCTGAATGCCTTCGGTTCGGGGAAACCGCTGTccttggccatggccgc
catTCCCGCCTTGGGTGGGGTTTGCGTGGGTGTGATTCGGGAAGCCGCGC
GTGAGTTCCCACCAGGCTTGAGCGGCCAAGCCGAAGAGGTGGATAAACAG
AAGCCCTTGGATGTGAAACGGGCCGTCCTGAAGTCCTTGGCGGCCGTGGC
GACCCTGGGGACCGGGTGCTCCCTCGGGCCCGAAGGTCCCGCCGTGGAAC
TCGGCGTGGTGGCCTCCCGACTGGTCACGCTCAAGGCGAGCCTGGAGCAA
CGGAAGCAGTTGCTCCTGGCCGGGGCCGCCgcgggggtggcggcgggctt
CAATGCCCCTATTGCCGGGGTTTTCTTTGCCTTGGAAATTGCCTCTGCcc
aaggtggaggggagggtgggg
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Synonyms
Publications