rna73, rna73 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna73
Unique Name	rna73
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1161
Alignment location	CM002455.1:203867..205905 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100129g17.1878.mrna
Orig protein id	gnl\|cribi\|Naga_100129g17.1878
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:203867..205905 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100129g17	gene71	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna73	rna73-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30600.1	cds73	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:203867..205905+
coding sequence from alignment at CM002455.1:203867..205905+

mRNA sequence

>rna73 ID=rna73|Name=rna73|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp
ATGCGCCGTCTTGGTCCCTACTACCTCGGCCAAACCATTGGAGAAGGAAC
GTTTGGACGGGTAAAGGCGGGCGTGCATGCCCTGACGGGAGAAAAAGTGG
CCATCAAACTCCTGGAAAAAAACAGAATCGTAGACGCCGGTGACGTGCGG
CGGGTGACCCGAGAGATCGACATCCTGAAACGCAACCGGCACCGAAACAT
CATTCAGTTGTACGATGTGCTCGATACTCCTGCAAGGATCTACTTGGTCA
TGGAGAACGCGGACGGGGGCGAGCTTTTCGACTACATCGTGAAACGACAG
CGTGTCCCCGAGCCGGAGGCCTCGGCGTTTTTCAAGCAGCTGGTCGACGG
CGTCGGTTATTTGCATGCCATGGAGGTGACTCATCGGGATTTAAAACCAG
AAAATTTGTTGTTGCAGTCCTCTAAAAGCGCCCCCGGGGGTTGGTGCGTG
AAAATCATCGATTTCGGCCTGTCCAACACCCATGAAGCTGGTACACTGCT
GTCTACAGCCTGTGGCTCCCCGTGCTATGCCTGCCCTGAAATGATCCGCG
GACTTGCCTACCGAGGCCCAGCTGCTGATGTCTGGAGCATGGGAGTCATT
TTGTATGCCATGGTCTGCGGGTACCTCCCTTTCGAGCACACCAACATTTC
CAAACTCTACCACAAAATCCTGGCGGGGCGCTACACGGTCCCTTCCTTCC
TCTCTCCCGGTGTGAAGGACTTGATTGCCAAGATCCTCGTTATCGACCCT
CAGACACGCTACTCCATTCCCGATATTCAGCGCCACCCGTGGTATCGGCA
GCTCGGGACGGGGAAAAGAAAGGACGTCAAGGCGACTCAATACCAGGAAG
CTCGTCCGCCCCCGGGGGCCGACTGCAAAGAAGAGGAAGATGGGACAGGC
TGCAGCCCCCCTGATGTCAACGTGAAGCTCGACGAGAACGTGCTCCAAGA
AGCAGTGTCCCTCGGATTGGACCGGGAGGAGCTCCTGAATGCCTTGCGAC
TGCACGCCTTCGGCTCCCTGACTGCCACCTACCACCTTCTTAATAGACGA
AGAAATTCCCATGGCACGCCCGATTTCGCGGGAATGGATCAGGGGAGCAA
CCACCTTCTCTTGCTGGCACCGTCGGGCATCCACAGGCAGCAGCGGCAGG
ACCAAGCATAA

protein sequence of rna73

>rna73-protein ID=rna73-protein|Name=rna73|organism=Nannochloropsis gaditana|type=polypeptide|length=261bp
MYRWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVG
PCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEKVKV
VLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKT
VKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTC
TDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVWEGGWLKDVPA
RFNTVAEFLEC

mRNA from alignment at CM002455.1:203867..205905+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna73 ID=rna73|Name=rna73|organism=Nannochloropsis gaditana|type=mRNA|length=2039bp|location=Sequence derived from alignment at CM002455.1:203867..205905+ (Nannochloropsis gaditana)
AGGCAGTAAGAGGACTGCAATGCAGGAATGCCACGTACGCATCCTCAATC
GACTACCTGAGGCTTACTTTCCATCTCCTGTCCTATTGCACCGGTTGCCC
ACAATTTCACAGGCAACGTAAAGGTACAAAATGTATCGCTGGTCTTGTGC
GTTAGTGTGTGCCCTGCTGGCAGTCGCGGAGGTCGATGGTCATGCGCGCT
GGAAatgccccgccccccgcgaTGAGAATGACGCGGATGGTGAGTATCCT
CGATTCACGCTTGTGTCTCTGTCGAGCACGAGCAGCATGACATTGATATT
GACGTCCTGGGGACGGGTTATCTGAAGGGTTGGGAGGGGAGTGAATTCTC
GTTTCAGCTGAGAGCCCTACCCGCCCCTCATGATGTTTACGGACGGGGCC
CGGACCGACGAATGCGGTTCGAACCGGTCAGACGTCCTCGATAGCTTTCG
ATTTATACTATCTTGAATCTTTTCTGTTTCATTTTCTCAGAATATGGATA
TCCATGGCTGCAATGTACTCAAGTCCGgatccttttttccttctcatggc
tccctcctccattaccttccctccaggcAACCACATCCCGTTCGATAATA
CCGGCAACAAAGTCGGGCCCTGTGGCCCCTACTCAGGCATGTACGGGATG
AACGGTGTACGCGTCCTGAAACCAGGCCCCTTGACGCTCACCTGGGAAGA
AAGCATCGCGCACGTGGGTTCTCCCTTCCGAATTGCCATTCTGGACGAAC
ACGAAAAAGTGAAGGTCGTCCTTGCGGACCACATCCCTCACGACGACGCG
GCCAAAACCACGTTCTTCGAGCAGTTCTATACGCCCTACCACCTCACAGT
CGACATCCCGGACGTGCAATGCGAAAAATGCACCTTGCAATTGATTTATT
TCATGACGGACAAGACTGTCAAATGCGGCTCTTTGTTGTGTACCTACTAC
CCTGAAGACTCCGCCTGTTCGGGCCAAATCGACGCGAGCGAGCCCACTTG
TTTCGGGGCTCCCAACGATGTTCCCTGTCTCAAGGAGGACACGTGTTTTT
CCAACTACCATACCTGCACCGACGTGACGATTCAGGGTACCCGGAGTTTC
GAAGAATTCGACATGGATCTACAGGTAAGGACGGGAGGTTTTGGCGATGA
CACTGAAGGGATCGAGTCGATCGGGTAAAGGGTGGAACAGCCTGCCTCGT
CTCCTACGACTTCAACGATTTAACTCCGCTAATTTTTGGtatgcctccct
ctctttccccccccccccttttaCCCGtttttctcgccctccccttttcc
aaGCCAATGGACTGGCCATACAAGAACCTAACCATGGGGGTGTACGGAGC
CGAGGAGGCTGtgtgggagggtgggtggTTGAAGGACGTGCCTGCACGTT
TTAACACCGTGGCAGAGTTCTTGGAGTGCTGAGGAGGTAGCCTATCTGCG
GAGGTCAACGGCCGCTGCGAGAGGGGATCGGGTTTAGAGTGAATGCGAGG
GGAGTCGGCCGTCTCCTGTGGAGGGCGCGCGGCtgcgagagagggggggg
aaagggggaatgggggaaTGTGTGTATAAGGAGCATAGGAAGCAAAACGA
CGCCATGAACGCAGAAATTTCTTGTCGGGAGGCTGGAAGACGAATGAATC
CTGTGGACCGGGATGAAGGTAAAGGGTCCTGCATTGTAGCCGTGATCTCG
ATGCGGTCTGCCACCTCGTCGATATATCTCGATTTAGCAAGCAGCCTCGC
AGCATACGCACCGGCCCATAGCAGCGAAGCACGGAGACGAATCGCTTCCA
CGATGGGATCTGAAGAGGAATTTGGGGGTATGTgtgcgggggtggaggga
attACAGGCCTCGAGCAGCGTGCAGTGAAGCGCGGGAGGAAattggggga
aaagaagaaagatgTACATGCGTGTGCGCTGTGCCAAGATGCTTGAGCGC
GTCGGGGGGTGTAAAGCCTTAGTATTCCGTCGCTTGCGTCGCAGGAAGCC
TTGCATTACTTGTTTCTTTCGGAACCCTGGCCTCCATTC

Coding sequence (CDS) from alignment at CM002455.1:203867..205905+

>rna73 ID=rna73|Name=rna73|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at CM002455.1:203867..205905+ (Nannochloropsis gaditana)
ATGTATCGCTGGTCTTGTGCGTTAGTGTGTGCCCTGCTGGCAGTCGCGGA
GGTCGATGGTCATGCGCGCTGGAAatgccccgccccccgcgaTGAGAATG
ACGCGGATGgcAACCACATCCCGTTCGATAATACCGGCAACAAAGTCGGG
CCCTGTGGCCCCTACTCAGGCATGTACGGGATGAACGGTGTACGCGTCCT
GAAACCAGGCCCCTTGACGCTCACCTGGGAAGAAAGCATCGCGCACGTGG
GTTCTCCCTTCCGAATTGCCATTCTGGACGAACACGAAAAAGTGAAGGTC
GTCCTTGCGGACCACATCCCTCACGACGACGCGGCCAAAACCACGTTCTT
CGAGCAGTTCTATACGCCCTACCACCTCACAGTCGACATCCCGGACGTGC
AATGCGAAAAATGCACCTTGCAATTGATTTATTTCATGACGGACAAGACT
GTCAAATGCGGCTCTTTGTTGTGTACCTACTACCCTGAAGACTCCGCCTG
TTCGGGCCAAATCGACGCGAGCGAGCCCACTTGTTTCGGGGCTCCCAACG
ATGTTCCCTGTCTCAAGGAGGACACGTGTTTTTCCAACTACCATACCTGC
ACCGACGTGACGATTCAGGGTACCCGGAGTTTCGAAGAATTCGACATGGA
TCTACAGCCAATGGACTGGCCATACAAGAACCTAACCATGGGGGTGTACG
GAGCCGAGGAGGCTGtgtgggagggtgggtggTTGAAGGACGTGCCTGCA
CGTTTTAACACCGTGGCAGAGTTCTTGGAGTGCTGAATGTATCGCTGGTC
TTGTGCGTTAGTGTGTGCCCTGCTGGCAGTCGCGGAGGTCGATGGTCATG
CGCGCTGGAAatgccccgccccccgcgaTGAGAATGACGCGGATGgcAAC
CACATCCCGTTCGATAATACCGGCAACAAAGTCGGGCCCTGTGGCCCCTA
CTCAGGCATGTACGGGATGAACGGTGTACGCGTCCTGAAACCAGGCCCCT
TGACGCTCACCTGGGAAGAAAGCATCGCGCACGTGGGTTCTCCCTTCCGA
ATTGCCATTCTGGACGAACACGAAAAAGTGAAGGTCGTCCTTGCGGACCA
CATCCCTCACGACGACGCGGCCAAAACCACGTTCTTCGAGCAGTTCTATA
CGCCCTACCACCTCACAGTCGACATCCCGGACGTGCAATGCGAAAAATGC
ACCTTGCAATTGATTTATTTCATGACGGACAAGACTGTCAAATGCGGCTC
TTTGTTGTGTACCTACTACCCTGAAGACTCCGCCTGTTCGGGCCAAATCG
ACGCGAGCGAGCCCACTTGTTTCGGGGCTCCCAACGATGTTCCCTGTCTC
AAGGAGGACACGTGTTTTTCCAACTACCATACCTGCACCGACGTGACGAT
TCAGGGTACCCGGAGTTTCGAAGAATTCGACATGGATCTACAGCCAATGG
ACTGGCCATACAAGAACCTAACCATGGGGGTGTACGGAGCCGAGGAGGCT
GtgtgggagggtgggtggTTGAAGGACGTGCCTGCACGTTTTAACACCGT
GGCAGAGTTCTTGGAGTGCTGAATGTATCGCTGGTCTTGTGCGTTAGTGT
GTGCCCTGCTGGCAGTCGCGGAGGTCGATGGTCATGCGCGCTGGAAatgc
cccgccccccgcgaTGAGAATGACGCGGATGgcAACCACATCCCGTTCGA
TAATACCGGCAACAAAGTCGGGCCCTGTGGCCCCTACTCAGGCATGTACG
GGATGAACGGTGTACGCGTCCTGAAACCAGGCCCCTTGACGCTCACCTGG
GAAGAAAGCATCGCGCACGTGGGTTCTCCCTTCCGAATTGCCATTCTGGA
CGAACACGAAAAAGTGAAGGTCGTCCTTGCGGACCACATCCCTCACGACG
ACGCGGCCAAAACCACGTTCTTCGAGCAGTTCTATACGCCCTACCACCTC
ACAGTCGACATCCCGGACGTGCAATGCGAAAAATGCACCTTGCAATTGAT
TTATTTCATGACGGACAAGACTGTCAAATGCGGCTCTTTGTTGTGTACCT
ACTACCCTGAAGACTCCGCCTGTTCGGGCCAAATCGACGCGAGCGAGCCC
ACTTGTTTCGGGGCTCCCAACGATGTTCCCTGTCTCAAGGAGGACACGTG
TTTTTCCAACTACCATACCTGCACCGACGTGACGATTCAGGGTACCCGGA
GTTTCGAAGAATTCGACATGGATCTACAGCCAATGGACTGGCCATACAAG
AACCTAACCATGGGGGTGTACGGAGCCGAGGAGGCTGtgtgggagggtgg
gtggTTGAAGGACGTGCCTGCACGTTTTAACACCGTGGCAGAGTTCTTGG
AGTGCTGA

Synonyms

Publications