EWM30600.1, cds73 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|585113272|gb|EWM30600.1| (hypothetical protein Naga_100129g17 [Nannochloropsis gaditana]) HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query: 1 MYRWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVWEGGWLKDVPARFNTVAEFLEC 261
MYRWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVWEGGWLKDVPARFNTVAEFLEC
Sbjct: 1 MYRWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVWEGGWLKDVPARFNTVAEFLEC 261
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|224010347|ref|XP_002294131.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970148|gb|EED88486.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 120.553 bits (301), Expect = 1.013e-28 Identity = 91/273 (33.33%), Postives = 125/273 (45.79%), Query Frame = 0
Query: 7 ALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRV--LKPGPLTLTWEESIAHVGSPFRIAI-LDEHEKVKVVLADHIPHDDAAKTTFFE-QFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKED-TCFSNYHTCT-------DVTIQGTRSFEEFDMD-LQPMD--WP----------YKNLTMGVYGAEEAVWE--GGWLKDVPARF 252
+L L++ H+RW CP PR + TG K GPCG + ++ + +KPGPL + +EESI H G+PFRI++ D + VL DHIPH+D + +F + YTPY +TV+IP+V CE+C+L L MTDK GS P + C D TCFS YH+CT DV G S E+ + L+ M+ WP GVY E ++W L VPAR+
Sbjct: 15 SLFIIALSINTSHAHSRWNCPVPRSPS-----------TGIKTGPCGDDINDFTIDSSSIVEIKPGPLRVVFEESITHTGAPFRISLSADGSDDSSCVLLDHIPHNDCCRPSFTDPSTYTPYVITVNIPNVICERCSLHLSNPMTDKIGSDGS--------------------------PTGIGCTDPDGTCFSVYHSCTVPFRIVADVE-NGAVSRSEYQCESLESMNEGWPSVWFGDNGEEVDASVPGVYRRESSIWSDVDNTLTTVPARY 249
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|290976044|ref|XP_002670751.1| (predicted protein [Naegleria gruberi] >gi|284084313|gb|EFC38007.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 106.686 bits (265), Expect = 6.463e-24 Identity = 66/212 (31.13%), Postives = 97/212 (45.75%), Query Frame = 0
Query: 8 LVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIA--ILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMD 217
L + ++ V GHARWK P PR + +G K PCG V +L+PG L +EE+I+H G+PFRIA I + K +L DHIPH+D + ++ + Y VDIP+++C+KC++ L MTDK C S YP + ++ C S YH+C ++ I GT F +
Sbjct: 12 LCIGMFMISSVSGHARWKYPTPRTSD-----------SGLKSYPCGGVEFFGNGQPVTILQPGKQILQFEETISHTGAPFRIALSINSDSNYEKYILIDHIPHNDQSDSSSLKV----YQYLVDIPNIKCQKCSISLTNPMTDKQSGCCS-----YPTTKTGNSEL---------------------CGSVYHSCANIQINGTVELSNFKYN 182
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|290973919|ref|XP_002669694.1| (predicted protein [Naegleria gruberi] >gi|284083245|gb|EFC36950.1| predicted protein [Naegleria gruberi]) HSP 1 Score: 105.916 bits (263), Expect = 1.321e-23 Identity = 75/231 (32.47%), Postives = 106/231 (45.89%), Query Frame = 0
Query: 12 LLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAI-LDEHEKV-KVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVW 240
L + VD HARWK P PR + +G K PCG + L+PG TL +EE+I+H G+PFRIA+ +D +L DHIPH+DA +++ + Y V IPD+ C KC+L L MTDK + G+ C YP+ S+ S Q C S YH+C ++ I+G ++F ++ Y G Y E A W
Sbjct: 17 LTSSTMVDAHARWKYPTPRTSD-----------SGLKSYPCGGIEFFGNGQSITTLQPGKQTLQFEETISHTGAPFRIALSIDSDSNYDSFILIDHIPHNDATESSSLKI----YQYEVTIPDIDCPKCSLALTNPMTDK-IAAGT--CCAYPKASSSSPQ----------------------CGSVYHSCANIVIKGKIPVDQFK-----ANYTYTG-PCGDYQRESATW 201
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|923123801|ref|XP_013755369.1| (hypothetical protein AMSG_12126 [Thecamonas trahens ATCC 50062] >gi|906559237|gb|KNC52480.1| hypothetical protein AMSG_12126 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 90.5077 bits (223), Expect = 2.336e-17 Identity = 70/214 (32.71%), Postives = 94/214 (43.93%), Query Frame = 0
Query: 12 LLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIA---------ILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACS--GQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEF 214
+ V VDGH+ W CP PR + TG K PCG + PG LT++W E+I H G+P+RIA ++ + VVLADHIPH D A + Y+ TVDIP+V TLQL+ MTDK + ++CS G +D E CFS YH+C ++I GT +F
Sbjct: 14 MAMVVRVDGHSAWLCPKPRSPS-----------TGLKDYPCGRSVFNKWDGPWTSVAPGKLTVSWHETINHNGAPYRIALSLGSGPDGLVGDCTFEDVVLADHIPHWDMASSD------KTYYFTVDIPNVDAPFATLQLLNPMTDKLMG------------TSCSTIGNVDDPE-----------------CFSVYHSCASISITGTTPVADF 181
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|919035982|ref|XP_013401471.1| (PREDICTED: uncharacterized protein LOC106167285 [Lingula anatina]) HSP 1 Score: 87.8113 bits (216), Expect = 1.984e-16 Identity = 70/226 (30.97%), Postives = 99/226 (43.81%), Query Frame = 0
Query: 3 RWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGP--YSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDE-HEKVKVVLADHIPHDDAAKTTFFEQFYTP---------------YHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRS 210
+++ L + + ++GH RW CP P+ N TG K GPCG + G Y M+ V PGP+T+ WEESI H G+P I ++ + + +L DHIPH+DA F F P +TV+IPD+ C C L L MTDK Y +ACS Q+ C S Y+TCT++ I+ T +
Sbjct: 2 QFALCLSVMVASFLTIEGHVRWVCPRPQSTN-----------TGIKSGPCGAVDFEGGY-MDVV----PGPMTVRWEESIFHRGAPSSIRLMKKGDDSTDCLLLDHIPHNDAMVVKF--PFTDPNCKISGEPLGKCSGVTQVTVNIPDIDCPDCYLLLTSVMTDK-----------YGPTTACS-QLTNGNNNC----------------STYYTCTNIKIRPTAA 181
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|918998630|ref|XP_013396700.1| (PREDICTED: uncharacterized protein LOC106163601 [Lingula anatina]) HSP 1 Score: 88.5817 bits (218), Expect = 2.758e-16 Identity = 72/221 (32.58%), Postives = 97/221 (43.89%), Query Frame = 0
Query: 9 VCALLAVAE---VDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGP--YSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHE-KVKVVLADHIPHDDAAKTTFFEQFYTP---------------YHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGT 208
+C + VA ++GH RW CP P+ N TG K GPCG + G Y M+ V PGP+T+ WEESI H G+P I ++ + + +L DHIPH+DA F F P +TV+IPD+ C C L L MTDK Y +ACS Q+ C S Y+TCT++ I+ T
Sbjct: 5 LCFFVMVASFLTIEGHVRWVCPRPQSTN-----------TGIKSGPCGAVDFEGGY-MDVV----PGPMTVRWEESIFHRGAPSSIRLMKKGDDSTACLLLDHIPHNDAMVVKF--PFTDPNCKISGEPLGKCSGVTQVTVNIPDIDCPDCYLLLTSVMTDK-----------YGPTTACS-QLTNGNNNC----------------STYYTCTNIKIRPT 179
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|1072220871|gb|OEU05739.1| (hypothetical protein FRACYDRAFT_258474 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 80.4925 bits (197), Expect = 7.298e-14 Identity = 62/211 (29.38%), Postives = 93/211 (44.08%), Query Frame = 0
Query: 18 VDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEK-----------VKVVLADHIPHDDAAKTTFF-EQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDM 216
V+GH R +CP P TG K+GPC + + + T+TW ESI+H G+P R A+ E +L DHIPHD ++ T+ E + +T+ IPDVQCE+C LQLI M+D P D+ C+ + + + + P C + YH+C+ V+I GT + D+
Sbjct: 30 VEGHVRLECPPPLS-----------GKTGEKIGPCDVSTDDGLLQSFPLQANALNTVTWLESISHPGAPVRFALSREGGGDSNGGEAATGFETCLLLDHIPHDALSRPTYRNESSWHRSSITLWIPDVQCERCYLQLISVMSDAAHGV--------PIDTKCAYRANTNNVIEIA---ETPESDFPACPAVYHSCSPVSIDGTIPRNDMDV 218
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|930009222|ref|WP_054114133.1| (hypothetical protein [Marinagarivorans algicola]) HSP 1 Score: 63.5438 bits (153), Expect = 5.887e-8 Identity = 57/151 (37.75%), Postives = 69/151 (45.70%), Query Frame = 0
Query: 5 SCAL-VCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGN-KVGPCGPYSGMYGMNGVRVLKPGP-LTLTWEESIAHVGSPFRIAILDEHEKV--KVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKT 150
SC L V ++V HARW DG +N N KVGPCG + G N V K G +TL WE +I H G FRIA +K + VL D+IP E+ PY V +P CE CTLQLI M D+T
Sbjct: 8 SCFLAVVGFFCASQVLAHARWS---------QDGTTPGRNNKANLKVGPCGNVA--RGSNPA-VFKAGQTITLNWESTIYHEGY-FRIAFSPADDKGFDQAVLLDNIPER--------ERPPGPYSAQVTLPSEPCEACTLQLIQVMLDRT 137
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|928955412|ref|WP_053980091.1| (hypothetical protein [Marinagarivorans algicola]) HSP 1 Score: 63.5438 bits (153), Expect = 5.942e-8 Identity = 57/151 (37.75%), Postives = 69/151 (45.70%), Query Frame = 0
Query: 5 SCAL-VCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGN-KVGPCGPYSGMYGMNGVRVLKPGP-LTLTWEESIAHVGSPFRIAILDEHEKV--KVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKT 150
SC L V ++V HARW DG +N N KVGPCG + G N V K G +TL WE +I H G FRIA +K + VL D+IP E+ PY V +P CE CTLQLI M D+T
Sbjct: 8 SCFLAVVGFFCASQVLAHARWS---------QDGTTPGRNNKANLKVGPCGNVA--RGSNPA-VFKAGQTITLNWESTIYHEGY-FRIAFSPADDKGFDQAVLLDNIPER--------ERPPGPYSAQVTLPSEPCEACTLQLIQVMLDRT 137 The following BLAST results are available for this feature:
BLAST of EWM30600.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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