EWM30600.1, cds73 (CDS) Nannochloropsis gaditana

Overview
NameEWM30600.1
Unique Namecds73
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:203997..204105 +
Alignment locationCM002455.1:204443..204990 +
Alignment locationCM002455.1:205170..205298 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30600.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100129g17.1878.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:203997..204105 +
CM002455.1supercontigCM002455.1:204443..204990 +
CM002455.1supercontigCM002455.1:205170..205298 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|585113272|gb|EWM30600.1| (hypothetical protein Naga_100129g17 [Nannochloropsis gaditana])

HSP 1 Score: 548.125 bits (1411), Expect = 0.000e+0
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
Query:    1 MYRWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVWEGGWLKDVPARFNTVAEFLEC 261
            MYRWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVWEGGWLKDVPARFNTVAEFLEC
Sbjct:    1 MYRWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVWEGGWLKDVPARFNTVAEFLEC 261          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|224010347|ref|XP_002294131.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970148|gb|EED88486.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 120.553 bits (301), Expect = 1.013e-28
Identity = 91/273 (33.33%), Postives = 125/273 (45.79%), Query Frame = 0
Query:    7 ALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRV--LKPGPLTLTWEESIAHVGSPFRIAI-LDEHEKVKVVLADHIPHDDAAKTTFFE-QFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKED-TCFSNYHTCT-------DVTIQGTRSFEEFDMD-LQPMD--WP----------YKNLTMGVYGAEEAVWE--GGWLKDVPARF 252
            +L    L++     H+RW CP PR  +           TG K GPCG     + ++   +  +KPGPL + +EESI H G+PFRI++  D  +    VL DHIPH+D  + +F +   YTPY +TV+IP+V CE+C+L L   MTDK    GS                          P  + C   D TCFS YH+CT       DV   G  S  E+  + L+ M+  WP                GVY  E ++W      L  VPAR+
Sbjct:   15 SLFIIALSINTSHAHSRWNCPVPRSPS-----------TGIKTGPCGDDINDFTIDSSSIVEIKPGPLRVVFEESITHTGAPFRISLSADGSDDSSCVLLDHIPHNDCCRPSFTDPSTYTPYVITVNIPNVICERCSLHLSNPMTDKIGSDGS--------------------------PTGIGCTDPDGTCFSVYHSCTVPFRIVADVE-NGAVSRSEYQCESLESMNEGWPSVWFGDNGEEVDASVPGVYRRESSIWSDVDNTLTTVPARY 249          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|290976044|ref|XP_002670751.1| (predicted protein [Naegleria gruberi] >gi|284084313|gb|EFC38007.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 106.686 bits (265), Expect = 6.463e-24
Identity = 66/212 (31.13%), Postives = 97/212 (45.75%), Query Frame = 0
Query:    8 LVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIA--ILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMD 217
            L   +  ++ V GHARWK P PR  +           +G K  PCG          V +L+PG   L +EE+I+H G+PFRIA  I  +    K +L DHIPH+D + ++  +     Y   VDIP+++C+KC++ L   MTDK   C S     YP     + ++                     C S YH+C ++ I GT     F  +
Sbjct:   12 LCIGMFMISSVSGHARWKYPTPRTSD-----------SGLKSYPCGGVEFFGNGQPVTILQPGKQILQFEETISHTGAPFRIALSINSDSNYEKYILIDHIPHNDQSDSSSLKV----YQYLVDIPNIKCQKCSISLTNPMTDKQSGCCS-----YPTTKTGNSEL---------------------CGSVYHSCANIQINGTVELSNFKYN 182          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|290973919|ref|XP_002669694.1| (predicted protein [Naegleria gruberi] >gi|284083245|gb|EFC36950.1| predicted protein [Naegleria gruberi])

HSP 1 Score: 105.916 bits (263), Expect = 1.321e-23
Identity = 75/231 (32.47%), Postives = 106/231 (45.89%), Query Frame = 0
Query:   12 LLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAI-LDEHEKV-KVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDMDLQPMDWPYKNLTMGVYGAEEAVW 240
            L +   VD HARWK P PR  +           +G K  PCG          +  L+PG  TL +EE+I+H G+PFRIA+ +D        +L DHIPH+DA +++  +     Y   V IPD+ C KC+L L   MTDK +  G+  C  YP+ S+ S Q                      C S YH+C ++ I+G    ++F       ++ Y     G Y  E A W
Sbjct:   17 LTSSTMVDAHARWKYPTPRTSD-----------SGLKSYPCGGIEFFGNGQSITTLQPGKQTLQFEETISHTGAPFRIALSIDSDSNYDSFILIDHIPHNDATESSSLKI----YQYEVTIPDIDCPKCSLALTNPMTDK-IAAGT--CCAYPKASSSSPQ----------------------CGSVYHSCANIVIKGKIPVDQFK-----ANYTYTG-PCGDYQRESATW 201          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|923123801|ref|XP_013755369.1| (hypothetical protein AMSG_12126 [Thecamonas trahens ATCC 50062] >gi|906559237|gb|KNC52480.1| hypothetical protein AMSG_12126 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 90.5077 bits (223), Expect = 2.336e-17
Identity = 70/214 (32.71%), Postives = 94/214 (43.93%), Query Frame = 0
Query:   12 LLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIA---------ILDEHEKVKVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACS--GQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEF 214
            +  V  VDGH+ W CP PR  +           TG K  PCG             + PG LT++W E+I H G+P+RIA         ++ +     VVLADHIPH D A +         Y+ TVDIP+V     TLQL+  MTDK +             ++CS  G +D  E                 CFS YH+C  ++I GT    +F
Sbjct:   14 MAMVVRVDGHSAWLCPKPRSPS-----------TGLKDYPCGRSVFNKWDGPWTSVAPGKLTVSWHETINHNGAPYRIALSLGSGPDGLVGDCTFEDVVLADHIPHWDMASSD------KTYYFTVDIPNVDAPFATLQLLNPMTDKLMG------------TSCSTIGNVDDPE-----------------CFSVYHSCASISITGTTPVADF 181          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|919035982|ref|XP_013401471.1| (PREDICTED: uncharacterized protein LOC106167285 [Lingula anatina])

HSP 1 Score: 87.8113 bits (216), Expect = 1.984e-16
Identity = 70/226 (30.97%), Postives = 99/226 (43.81%), Query Frame = 0
Query:    3 RWSCALVCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGP--YSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDE-HEKVKVVLADHIPHDDAAKTTFFEQFYTP---------------YHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRS 210
            +++  L   + +   ++GH RW CP P+  N           TG K GPCG   + G Y M+ V    PGP+T+ WEESI H G+P  I ++ +  +    +L DHIPH+DA    F   F  P                 +TV+IPD+ C  C L L   MTDK           Y   +ACS Q+      C                S Y+TCT++ I+ T +
Sbjct:    2 QFALCLSVMVASFLTIEGHVRWVCPRPQSTN-----------TGIKSGPCGAVDFEGGY-MDVV----PGPMTVRWEESIFHRGAPSSIRLMKKGDDSTDCLLLDHIPHNDAMVVKF--PFTDPNCKISGEPLGKCSGVTQVTVNIPDIDCPDCYLLLTSVMTDK-----------YGPTTACS-QLTNGNNNC----------------STYYTCTNIKIRPTAA 181          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|918998630|ref|XP_013396700.1| (PREDICTED: uncharacterized protein LOC106163601 [Lingula anatina])

HSP 1 Score: 88.5817 bits (218), Expect = 2.758e-16
Identity = 72/221 (32.58%), Postives = 97/221 (43.89%), Query Frame = 0
Query:    9 VCALLAVAE---VDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGP--YSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHE-KVKVVLADHIPHDDAAKTTFFEQFYTP---------------YHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGT 208
            +C  + VA    ++GH RW CP P+  N           TG K GPCG   + G Y M+ V    PGP+T+ WEESI H G+P  I ++ + +     +L DHIPH+DA    F   F  P                 +TV+IPD+ C  C L L   MTDK           Y   +ACS Q+      C                S Y+TCT++ I+ T
Sbjct:    5 LCFFVMVASFLTIEGHVRWVCPRPQSTN-----------TGIKSGPCGAVDFEGGY-MDVV----PGPMTVRWEESIFHRGAPSSIRLMKKGDDSTACLLLDHIPHNDAMVVKF--PFTDPNCKISGEPLGKCSGVTQVTVNIPDIDCPDCYLLLTSVMTDK-----------YGPTTACS-QLTNGNNNC----------------STYYTCTNIKIRPT 179          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|1072220871|gb|OEU05739.1| (hypothetical protein FRACYDRAFT_258474 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.4925 bits (197), Expect = 7.298e-14
Identity = 62/211 (29.38%), Postives = 93/211 (44.08%), Query Frame = 0
Query:   18 VDGHARWKCPAPRDENDADGNHIPFDNTGNKVGPCGPYSGMYGMNGVRVLKPGPLTLTWEESIAHVGSPFRIAILDEHEK-----------VKVVLADHIPHDDAAKTTFF-EQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKTVKCGSLLCTYYPEDSACSGQIDASEPTCFGAPNDVPCLKEDTCFSNYHTCTDVTIQGTRSFEEFDM 216
            V+GH R +CP P               TG K+GPC   +    +    +      T+TW ESI+H G+P R A+  E                 +L DHIPHD  ++ T+  E  +    +T+ IPDVQCE+C LQLI  M+D             P D+ C+ + + +         + P      C + YH+C+ V+I GT    + D+
Sbjct:   30 VEGHVRLECPPPLS-----------GKTGEKIGPCDVSTDDGLLQSFPLQANALNTVTWLESISHPGAPVRFALSREGGGDSNGGEAATGFETCLLLDHIPHDALSRPTYRNESSWHRSSITLWIPDVQCERCYLQLISVMSDAAHGV--------PIDTKCAYRANTNNVIEIA---ETPESDFPACPAVYHSCSPVSIDGTIPRNDMDV 218          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|930009222|ref|WP_054114133.1| (hypothetical protein [Marinagarivorans algicola])

HSP 1 Score: 63.5438 bits (153), Expect = 5.887e-8
Identity = 57/151 (37.75%), Postives = 69/151 (45.70%), Query Frame = 0
Query:    5 SCAL-VCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGN-KVGPCGPYSGMYGMNGVRVLKPGP-LTLTWEESIAHVGSPFRIAILDEHEKV--KVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKT 150
            SC L V      ++V  HARW           DG     +N  N KVGPCG  +   G N   V K G  +TL WE +I H G  FRIA     +K   + VL D+IP          E+   PY   V +P   CE CTLQLI  M D+T
Sbjct:    8 SCFLAVVGFFCASQVLAHARWS---------QDGTTPGRNNKANLKVGPCGNVA--RGSNPA-VFKAGQTITLNWESTIYHEGY-FRIAFSPADDKGFDQAVLLDNIPER--------ERPPGPYSAQVTLPSEPCEACTLQLIQVMLDRT 137          
BLAST of EWM30600.1 vs. NCBI_GenBank
Match: gi|928955412|ref|WP_053980091.1| (hypothetical protein [Marinagarivorans algicola])

HSP 1 Score: 63.5438 bits (153), Expect = 5.942e-8
Identity = 57/151 (37.75%), Postives = 69/151 (45.70%), Query Frame = 0
Query:    5 SCAL-VCALLAVAEVDGHARWKCPAPRDENDADGNHIPFDNTGN-KVGPCGPYSGMYGMNGVRVLKPGP-LTLTWEESIAHVGSPFRIAILDEHEKV--KVVLADHIPHDDAAKTTFFEQFYTPYHLTVDIPDVQCEKCTLQLIYFMTDKT 150
            SC L V      ++V  HARW           DG     +N  N KVGPCG  +   G N   V K G  +TL WE +I H G  FRIA     +K   + VL D+IP          E+   PY   V +P   CE CTLQLI  M D+T
Sbjct:    8 SCFLAVVGFFCASQVLAHARWS---------QDGTTPGRNNKANLKVGPCGNVA--RGSNPA-VFKAGQTITLNWESTIYHEGY-FRIAFSPADDKGFDQAVLLDNIPER--------ERPPGPYSAQVTLPSEPCEACTLQLIQVMLDRT 137          
The following BLAST results are available for this feature:
BLAST of EWM30600.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113272|gb|EWM30600.1|0.000e+0100.00hypothetical protein Naga_100129g17 [Nannochlorops... [more]
gi|224010347|ref|XP_002294131.1|1.013e-2833.33predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|290976044|ref|XP_002670751.1|6.463e-2431.13predicted protein [Naegleria gruberi] >gi|28408431... [more]
gi|290973919|ref|XP_002669694.1|1.321e-2332.47predicted protein [Naegleria gruberi] >gi|28408324... [more]
gi|923123801|ref|XP_013755369.1|2.336e-1732.71hypothetical protein AMSG_12126 [Thecamonas trahen... [more]
gi|919035982|ref|XP_013401471.1|1.984e-1630.97PREDICTED: uncharacterized protein LOC106167285 [L... [more]
gi|918998630|ref|XP_013396700.1|2.758e-1632.58PREDICTED: uncharacterized protein LOC106163601 [L... [more]
gi|1072220871|gb|OEU05739.1|7.298e-1429.38hypothetical protein FRACYDRAFT_258474 [Fragilario... [more]
gi|930009222|ref|WP_054114133.1|5.887e-837.75hypothetical protein [Marinagarivorans algicola][more]
gi|928955412|ref|WP_053980091.1|5.942e-837.75hypothetical protein [Marinagarivorans algicola][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna73rna73Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications