rna7298, rna7298 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7298
Unique Name	rna7298
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2350
Alignment location	CM002471.1:277510..279404 -

Link to JBrowse

Properties


Property Name	Value
Product	ribonucleoprotein LSM
Orig transcript id	gnl\|cribi\|Naga_100189g8.10215.mrna
Orig protein id	gnl\|cribi\|Naga_100189g8.10215
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:277510..279404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100189g8	gene7063	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23394.1	cds7281	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7298	rna7298-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:277510..279404-
coding sequence from alignment at CM002471.1:277510..279404-

mRNA sequence

>rna7298 ID=rna7298|Name=rna7298|organism=Nannochloropsis gaditana|type=mRNA|length=2350bp
GCGGGCAGGACCTTTATCCAAGTTTTTTCCCCCCACGCCGTTGGCCGAGC
CACAAAACGTGTAGATACCGAATGAAGGCCCAACCGTCGCAAATCAAAGC
CTTTTAGAGATGCATTTGCACTCGCCTTCTTAGAACTAATTTGTACTATG
TATGTAACATTGCCCCCTCCATTTCATGACTTTTGACCCTACAGCAGCTC
CGCGACTTCGCTTTGATGAGGAGAGGGCCGCTGCGAAGGATGATGACGCC
CACCTCGACCTTCCTATCCCTCCTGCTTGGGTCCACCCTTGTATCAGAGC
AACAACTCTTGACTCGAGCTTTTTTGGTACCAGCAGCACTTCAAAACCCA
TCAACCCTAGTCCTGTATCATAGTCCTCCATCTTCTTCGGCCGCAGAAAC
AGTCACACGCCCGGCACCCTTGCAAGTAGGCGCTGCCGAGAGCCCGGGCA
ACGTCGCGTCCGGAGTGGCCGCAGACGACAATGTTCCAGAAGGTCACAAG
GGGCTGCACGAGTTTCTGTACGGCGATGACGACGCCCACGGTACGAGGGC
ACCGCCTGCGGGAAGCACGTCGACTTCCTTCACCCGAGCCCAAGGCCCTT
TCCCTGCCGCATCTTTCCTGAAAGACTTGCAGGATACCCGCTTGGCGGCA
GTGTACGGAGTGTACGACGCTTCGGGGACCTTGCGGTACGTGGGAGTAAC
CCGCAACGTGGTGATGGCCTTGGAAGGGCATTTGCAGGCGCACGGTCCGG
AGGTGGTGGCCTCCGTGGCGTTGGAGAGCTTTCGATACCCCAAGCGGGAG
GAAATGGCGGCCGTGCAAGCGTCCTGGCTGGAGGAGGTGGCGGCAACGGG
GCAAAATCCAGAGGGGAACCGAAGCGTGGGGGAGGGCGGCTCCGGGGGCT
GGGCAAAGTCGATACGAGAGGTGGTGGAGTCGGGGGCCGGGCTGGGCGGG
GCGCACGCGGACACGAAGACCAAGCTGAGGACAGCTATGGCGGACCCGAC
CTTGCGGGACGAACTGGAGGACCTGGACGAGGAGGAGGAGTATGGGGAGG
AGGCAGAAGCAGCGCGTTCGGCGCGGCGGGCGCAACTGAAGGCGGCTGTG
GAGGAGAGTGACTGGAGTGGCATGATCGAGGGGCAGACCCGGTCCACGAT
CCCGGAGGGCACGCGGGACGCGGCTGCCAAGGAGGGAGGTGGGGAGATCA
CCAGTCCCTTTCGGGAGGGAGGGGCGGGATCCCCCTCCTCCCCTCCGCCG
GCGTCGCCCCCGTCATCCTCCCTCCCCGCGGAGGACACGCTGGAGCTGAC
GCCGGAAAATGTGGACCGCGTCCTTGAGGAAGTCCGGCCTTACTTGATCG
CAGACGGGGGCAACATCGAGGTGGTGCGTATCGACCTGGCGGACCGGGAC
ATTTTCCTCCGCCTGCAAGGGGCCTGTGGCTCCTGCCCGTCCTCCACGAC
CACCATGAAGATGGGGGTGGAGCGGGTCTTGCGGGAGAAATTCACCCAGC
TGGGAAGTGTGGAGGCGGTCTCGGACGCGCCCCTTTCTGTGGACGAGACG
GGCACCCCCTTGACCGAGAGAGCCGCCTTGGAACGGAAATTGGAGGAAAA
ATTGAGCGAAATTTTGCCGGCCATCCGGGGCTTGGGGGCCTCCGCCTCGA
TTGGGGGCGTGAGCGAGGAGGGGGTGGTAAAGCTCGTATACCAGGGCCCA
GAGAAAGTGAAAATGGGCGTGGTTTACGCTTTGAAAGGCATGCAGGGGGT
CACGAATGTGCATGTAGTCTAGGGCGACGGGCGGAGCCAAGGCGGGCGGG
GGACGACCGGCGCGAGGGAGGGCGGAAAAGCAAGCACGCGCGCAAGGAAA
TGCCCTGCTTGGATGAAAGGACAGCCAGTAGGGCGTTACATAACACAGCC
AGCCATTCCGTGGGATACCACGGTCGTAGTCGGGGGAACAGAAGCCGGTT
GCCTCTGACACAGCCCGGCCTAACATGAACCCTGCGTCCGGTCCGCGGGC
ACACCTTTATCCATGAAAAAATTGATATAATCACGCAAACAATTACTTTC
ACGAAACTTAGAAGTTTCGAGGTGGTGGCTATACACACAGTACTTTCACA
TGCTAAGCTGACTCAACCCTCCCCCCGCGTGGTCGACACGACCCGACCCC
CAATCCTTGCCTCTCCCGCCTCTCAGGGCGCGAGAGACCGCGCTCCGGCG
GAGAATCTAGGATCACCGTTTTCAGCTTGAGGTGCAGGGCCGAGGCCGGC
ACCAGCATGGAGGTGGCTCGGGAAGCAGCGAGAGAAGTCGGAGATGGGAG
AGCCCGGCATGTCATCAGCGGGCGTGTGTGGACCGGGCGGGGGCCGCCTC

protein sequence of rna7298

>rna7298-protein ID=rna7298-protein|Name=rna7298|organism=Nannochloropsis gaditana|type=polypeptide|length=448bp
MSSPAPSHGFWSSPSSPPDGDASVPPSLPAASATPSKKTLLREALIAFYE
VHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKL
SMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATF
TLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEE
AARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKA
VVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTG
EGEGAEGEQKERRRSQRKRGRRAGRKHKLPGKRKEAQREQEDDSLVGTEE
GQDQPAVNGGRTEEWEEDPEGGRKRKRAEARGGVEERQAGGEEASLAKHQ
KTGARQDQGGKDGGGEGVLRRTFPLVVVRGDNVVMVFEAAPARSTHAR

mRNA from alignment at CM002471.1:277510..279404-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7298 ID=rna7298|Name=rna7298|organism=Nannochloropsis gaditana|type=mRNA|length=1895bp|location=Sequence derived from alignment at CM002471.1:277510..279404- (Nannochloropsis gaditana)
AAATGTCATTTTAAATAGCACGGTACAAACATAGCTCAGTGATCTTTTTT
TCCCCCTTTTTAAAAACGCCTTATCACAAGAAAAAGGGTTGCCGTGCCCA
ACGTTCCTCATCCTGGTTTCGGCTCTCCATGGTTGCGTTGCATAACTTTA
ATTTCAAGAAATTCGTCCGACAACAACACCATATAGGTCACATGTTCATG
TTTGCACTTTTCTGTGGCGCTGAATGAGTTCGCCTGCTCCTTCACATGGA
TTTTGGTCTTCACCTAGTAGTCCTCCTGACGGCGACGCCTCGGTTCCCCC
TTCTCTCCCTGCAGCAAGTGCCACCCCCTCGAAGAAGACCCTCTTGCGGG
AGGCCCTCATTGCCTTTTATGAAGTGCACAACCCGTCTCAGCTTGTCGAC
GTTTTACTTGATGAGATTGTCGCTAAATATTTGGGGCAGGAGTCTCAGCT
CCTTGCCAGGCTCCATCGCCGTTACGGAGAGATGCCCCGCGTGCCGTACC
TCCCTCGCAACGGGGGAAAACTCAGCATGGGCTGTGATGACACTCTTCCA
TACAAATCAATGGATGACTCAGCTCTAAATCATGGGTCTTCCATCGGCAT
TCACTCGGAAGCAGAAAAAGCGTCGGATGAAGCACGTGCCAACCTCCTCT
CCCCTCACTTTGACGCCACCTTCACGCTCACGCAGCTGCCCCGAATGCGC
TCCTCGGTCAAAGCCGTCATCCCTGTACCCGACGCCCCGCTTTTTGACAA
CTTGTCCCGCTCCCGTCACCTCTTACCCCCGTCGCACACCGACTACATGC
CTCCTTGGGGTCCCAAGGAGGAGGCCGCACGAGCCGCACGGAGACAAGCG
CTCGTCGCGAAGAAGACGGCGATCGCAGCCGCCCGCGGTCCGCCTCTTCT
CCAGGTGTTGGCGGAGGGCCTCAAAACCGGTCCGACGGGGTTGCTGTACC
GATGCTATCAGGAGAAGAAGGCGGTGGTGGTGACCGTGCGACGCCGAAGT
GGGTTGAGGGGCACGGTGACGGGCCGGCTGCGGGGATTCGACCGGCACTT
CAACCTGGTTTTGGAGGAGGCACAGGAGGCGCTCTTTGTGCGAAGAGAGG
AGGGAAAAGACAGAGGGACGGGTGAGGGGGAGGGGGCCGAAGGAGAACAG
AAGGAGAGGAGGAGGAGTCAGCGGAAGAGGGGGAGGCGGGCGGGGAGGAA
GCACAAGCTGCCTGGGAAGAGAAAAGAGGCACAACGTGAGCAAGAGGACG
ATAGCCTTGTCGGGACAGAGGAAGGACAGGACCAGCCGGCAGTGAACGGA
GGGAGGACGGAGGAATGGGAGGAGGATCCGGAGGGCGGGAGAAAGAGGAA
ACGGGCGGAGGCCAGAGGGGGAGTCGAGGAAAGACAAGCGGGAGGGGAAG
AAGCAAGCCTAGCAAAACATCAAAAGACGGGCGCACGGCAGGACCAGGGA
GGGAAGGATGGCGGGGGGGAGGGGGTCTTGCGTCGCACGTTCCCCTTGGT
GGTGGTGCGGGGGGACAACGTGGTCATGGTCTTCGAGGCGGCCCCCGCCC
GGTCCACACACGCCCGCTGATGACATGCCGGGCTCTCCCATCTCCGACTT
CTCTCGCTGCTTCCCGAGCCACCTCCATGCTGGTGCCGGCCTCGGCCCTG
CACCTCAAGCTGAAAACGGTGATCCTAGATTCTCCGCCGGAGCGCGGTCT
CTCGCGCCCTGAGAGGCGGGAGAGGCAAGGATTGGGGGTCGGGTCGTGTC
GACCACGCGGGGGGAGGGTTGAGTCAGCTTAGCATGTGAAAGTACTGTGT
GTATAGCCACCACCTCGAAACTTCTAAGTTTCGTGAAAGTAATTGTTTGC
GTGATTATATCAATTTTTTCATGGATAAAGGTGTGCCCGCGGACC

Coding sequence (CDS) from alignment at CM002471.1:277510..279404-

>rna7298 ID=rna7298|Name=rna7298|organism=Nannochloropsis gaditana|type=CDS|length=1347bp|location=Sequence derived from alignment at CM002471.1:277510..279404- (Nannochloropsis gaditana)
ATGAGTTCGCCTGCTCCTTCACATGGATTTTGGTCTTCACCTAGTAGTCC
TCCTGACGGCGACGCCTCGGTTCCCCCTTCTCTCCCTGCAGCAAGTGCCA
CCCCCTCGAAGAAGACCCTCTTGCGGGAGGCCCTCATTGCCTTTTATGAA
GTGCACAACCCGTCTCAGCTTGTCGACGTTTTACTTGATGAGATTGTCGC
TAAATATTTGGGGCAGGAGTCTCAGCTCCTTGCCAGGCTCCATCGCCGTT
ACGGAGAGATGCCCCGCGTGCCGTACCTCCCTCGCAACGGGGGAAAACTC
AGCATGGGCTGTGATGACACTCTTCCATACAAATCAATGGATGACTCAGC
TCTAAATCATGGGTCTTCCATCGGCATTCACTCGGAAGCAGAAAAAGCGT
CGGATGAAGCACGTGCCAACCTCCTCTCCCCTCACTTTGACGCCACCTTC
ACGCTCACGCAGCTGCCCCGAATGCGCTCCTCGGTCAAAGCCGTCATCCC
TGTACCCGACGCCCCGCTTTTTGACAACTTGTCCCGCTCCCGTCACCTCT
TACCCCCGTCGCACACCGACTACATGCCTCCTTGGGGTCCCAAGGAGGAG
GCCGCACGAGCCGCACGGAGACAAGCGCTCGTCGCGAAGAAGACGGCGAT
CGCAGCCGCCCGCGGTCCGCCTCTTCTCCAGGTGTTGGCGGAGGGCCTCA
AAACCGGTCCGACGGGGTTGCTGTACCGATGCTATCAGGAGAAGAAGGCG
GTGGTGGTGACCGTGCGACGCCGAAGTGGGTTGAGGGGCACGGTGACGGG
CCGGCTGCGGGGATTCGACCGGCACTTCAACCTGGTTTTGGAGGAGGCAC
AGGAGGCGCTCTTTGTGCGAAGAGAGGAGGGAAAAGACAGAGGGACGGGT
GAGGGGGAGGGGGCCGAAGGAGAACAGAAGGAGAGGAGGAGGAGTCAGCG
GAAGAGGGGGAGGCGGGCGGGGAGGAAGCACAAGCTGCCTGGGAAGAGAA
AAGAGGCACAACGTGAGCAAGAGGACGATAGCCTTGTCGGGACAGAGGAA
GGACAGGACCAGCCGGCAGTGAACGGAGGGAGGACGGAGGAATGGGAGGA
GGATCCGGAGGGCGGGAGAAAGAGGAAACGGGCGGAGGCCAGAGGGGGAG
TCGAGGAAAGACAAGCGGGAGGGGAAGAAGCAAGCCTAGCAAAACATCAA
AAGACGGGCGCACGGCAGGACCAGGGAGGGAAGGATGGCGGGGGGGAGGG
GGTCTTGCGTCGCACGTTCCCCTTGGTGGTGGTGCGGGGGGACAACGTGG
TCATGGTCTTCGAGGCGGCCCCCGCCCGGTCCACACACGCCCGCTGA

Synonyms

Publications