EWM23394.1, cds7281 (CDS) Nannochloropsis gaditana

Overview
NameEWM23394.1
Unique Namecds7281
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:277835..279181 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23394.1
Productribonucleoprotein LSM
Orig transcript idgnl|cribi|Naga_100189g8.10215.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:277835..279181 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
IPR006649Ribonucl_LSM_euk/arc
Homology
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|585104406|gb|EWM23394.1| (ribonucleoprotein LSM [Nannochloropsis gaditana])

HSP 1 Score: 904.82 bits (2337), Expect = 0.000e+0
Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 0
Query:    1 MSSPAPSHGFWSSPSSPPDGDASVPPSLPAASATPSKKTLLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRGRRAGRKHKLPGKRKEAQREQEDDSLVGTEEGQDQPAVNGGRTEEWEEDPEGGRKRKRAEARGGVEERQAGGEEASLAKHQKTGARQDQGGKDGGGEGVLRRTFPLVVVRGDNVVMVFEAAPARSTHAR 448
            MSSPAPSHGFWSSPSSPPDGDASVPPSLPAASATPSKKTLLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRGRRAGRKHKLPGKRKEAQREQEDDSLVGTEEGQDQPAVNGGRTEEWEEDPEGGRKRKRAEARGGVEERQAGGEEASLAKHQKTGARQDQGGKDGGGEGVLRRTFPLVVVRGDNVVMVFEAAPARSTHAR
Sbjct:    1 MSSPAPSHGFWSSPSSPPDGDASVPPSLPAASATPSKKTLLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRGRRAGRKHKLPGKRKEAQREQEDDSLVGTEEGQDQPAVNGGRTEEWEEDPEGGRKRKRAEARGGVEERQAGGEEASLAKHQKTGARQDQGGKDGGGEGVLRRTFPLVVVRGDNVVMVFEAAPARSTHAR 448          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|553189282|ref|XP_005854970.1| (hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana CCMP526] >gi|553190240|ref|XP_005855153.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana CCMP526] >gi|422293907|gb|EKU21207.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana CCMP526] >gi|422294090|gb|EKU21390.1| hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 319.701 bits (818), Expect = 8.344e-106
Identity = 158/162 (97.53%), Postives = 159/162 (98.15%), Query Frame = 0
Query:  149 TFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQK 310
            TFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAE LKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEA+EALFVRR EGKDRG GEGEGAEGEQK
Sbjct:    1 TFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAESLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAEEALFVRRGEGKDRGAGEGEGAEGEQK 162          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|1173935876|gb|OQR86928.1| (hypothetical protein ACHHYP_09738 [Achlya hypogyna])

HSP 1 Score: 105.916 bits (263), Expect = 2.724e-22
Identity = 82/248 (33.06%), Postives = 121/248 (48.79%), Query Frame = 0
Query:   42 REALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDT-LPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQ---LPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
            R+ ++AFYE HNP  + ++   EI+  + G+E  L A+L ++YG  P +  L      +      T +PY                  EA+KA      +  SP FDAT  L +   LP M+S    V+P       DNL++ R LLP S  +Y    G  +   + A     VA K A A  R PPLL+ +A+    GP  +L    + +  V V +RR + +RGT TG L+GFD+HFN++L +  E
Sbjct:    6 RDRIVAFYEKHNPENVKNI--PEILRVFAGREDVLCAKLFKKYGCQPDLQTLAPVAAPVEYVYTPTYVPY------------------EAQKAG-SGPLDYRSPSFDATVALHERRPLPNMQS----VMP------LDNLNKCRPLLPESDPNYNGSIGQSKPKTKTA-----VAPKVAPAPQR-PPLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTE 216          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|698815314|ref|XP_009840686.1| (hypothetical protein H257_14536 [Aphanomyces astaci] >gi|574104415|gb|ETV69947.1| hypothetical protein H257_14536 [Aphanomyces astaci])

HSP 1 Score: 102.449 bits (254), Expect = 4.612e-21
Identity = 76/247 (30.77%), Postives = 113/247 (45.75%), Query Frame = 0
Query:   42 REALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGS--SIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYM-PPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
            R+ ++AFYE HNP  + ++   EI+  + G+E  L A+LH++YG  P +  + +   +LS          S D + +   +  S G   +   AS  A   L+    D                        P  DNL + R LLPP    ++ P   P   +    R      K  +  A + PP+L  +A+   TGP  LL+RC   K  VVV +RR S +RGT TG L+GFD+H NLVL +  +
Sbjct:    6 RDRIVAFYESHNPENVKNI--PEILRVFAGREDVLCAKLHKKYGCSPDI--VAKEDNELSAA-------ASYDPNFVPKTAPPSRGGPFDCRSASFNAHLALVRNRLDGASL------------------HHPALDNLYKCRMLLPPRDPQFIQPKVKPATPSVTTDR------KSKSTVAPKKPPVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMD 217          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|953503126|emb|CEG35894.1| (Ribonucleoprotein LSM domain [Plasmopara halstedii])

HSP 1 Score: 103.219 bits (256), Expect = 7.196e-20
Identity = 84/256 (32.81%), Postives = 122/256 (47.66%), Query Frame = 0
Query:   40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDE----------ARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
            L+   L AFY  HNP    D  + EIV K+ G+E QL A+L ++YGE P + +     G +S   DD           ++  +   I+S A   SD              +  S  FDA   L Q PR        +PVP A   DN+ + RHLLP S  +       +   A  +  +A+   KT+  AA  P L + LA+    GP  +L RC+ E+  V+V +RR + +RGT +G L+ FD+H NLVL +  +
Sbjct:    5 LMEARLRAFYTKHNPDN--DQNIAEIVRKFAGRERQLCAKLLKKYGEAPDLTF-----GDVSTDQDD-----------VSKTTDAVIYSYAAYQSDFKPYPLVKATPTSLDFRSKQFDALKAL-QTPRRLLE----LPVPTAYPLDNIQKCRHLLPKSDVNRQT-LIVRPNKASPSTAKAIKTSKTSSPAA--PSLFEQLADTYLDGPFRVLRRCFLERLRVLVVIRRINSVRGTCSGFLKAFDKHMNLVLLDVSQ 234          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|1173931669|gb|OQR83990.1| (hypothetical protein THRCLA_10888, partial [Thraustotheca clavata])

HSP 1 Score: 102.449 bits (254), Expect = 1.296e-19
Identity = 86/283 (30.39%), Postives = 131/283 (46.29%), Query Frame = 0
Query:   40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPR--NGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRG 320
            L +E +IAFY+ +NP  L ++   EI+  + G+E  L A+L ++YG  P +P L +  N    +     +LP       ALN+G  +   SE   A++  R  L           T L            +P  PL DNL++ R LLP S  +Y    G  +    AA     VA  T     R P LL+VLA+  ++GP  +L+ C + K  V V +RR + +RGT  G L+GFD+H N++L +  E    +  +  +    +     G +K   R    RG
Sbjct:  480 LKQERIIAFYKQYNPENLKNI--PEILRVFAGREDVLCAKLFKKYGCQPDLPTLEKKVNYAYQTSFVPYSLP------PALNNGP-LNFRSENFNANEALRHQL-----------TGL------------IPSQPL-DNLNKCRSLLPESDPNYNKSIGQTKPKPVAAP----VANATTPVPVR-PLLLEVLADRYESGPLSVLHACLKAKAKVCVVIRRVNSIRGTCFGFLKGFDKHMNMILLDVTERFLPQESDTSNASIHDWFRTPGVKKRYLRQLLIRG 724          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|301120756|ref|XP_002908105.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103136|gb|EEY61188.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 91.2781 bits (225), Expect = 6.414e-17
Identity = 76/246 (30.89%), Postives = 110/246 (44.72%), Query Frame = 0
Query:   40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
            L+ E L AFY  HNP    D  + +IV K+ G+E QL A+L ++YGE P                     + S  D+A        I   A  A+D    +  S  FDA   L Q P+ +  +  V   P     DN  + RHLLP S  +       + + A  +  +A       + A   P L + LAE    GP  +L  C+ E+  V V +RR + +RGT +G L+ FD+H NLVL +  +
Sbjct:    5 LVEERLRAFYAKHNPGN--DQNIAQIVRKFAGRERQLCAKLFKKYGEAP--------------------DFTSAGDTA----KEKDITKAAGPATDSP-LDFRSAQFDALKAL-QTPKQQLKLPVVAAYP----LDNTQKCRHLLPESDVNRQTLVA-RLKKANPSAAEAKAVAVKKVPAPATPSLFEQLAETYLDGPFRVLRHCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQ 217          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|566023043|gb|ETI45954.1| (hypothetical protein F443_09593 [Phytophthora parasitica P1569] >gi|568048752|gb|ETM45783.1| hypothetical protein L914_09249 [Phytophthora parasitica])

HSP 1 Score: 91.2781 bits (225), Expect = 8.803e-17
Identity = 81/252 (32.14%), Postives = 115/252 (45.63%), Query Frame = 0
Query:   40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAE--KASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPP----SHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
            L+ E L AFY  HNP    D  + EIV K+ G+E QL A+L ++YGE P                DDT+  + +      + +  G     +  K +D    +  S  FDA   L  L   +  +K  +PV  A   DN+ + RHLLP       T  + P  P   AA A       A      A   P L + LA+    GP  +L RC+ E+  V V +RR + +RGT +G L+ FD+H NLVL +  +
Sbjct:    5 LMEERLRAFYAKHNPGN--DQNIAEIVRKFAGRERQLCAKLFKKYGEAPDF-----------TSADDTVKERDVTRIPYPNATYEGDFKAYKLPKVTDSP-LDFRSAQFDA---LKALQTPKDQLK--LPVATAHPLDNIQKCRHLLPELDVNRQTLVVRPKKPSPSAADAKA-----AVVKKAPAPATPSLFEQLADTYLEGPFRVLRRCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQ 232          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|673028436|ref|XP_008868179.1| (hypothetical protein H310_05283 [Aphanomyces invadans] >gi|574475796|gb|ETW02795.1| hypothetical protein H310_05283 [Aphanomyces invadans])

HSP 1 Score: 89.3521 bits (220), Expect = 2.502e-16
Identity = 75/251 (29.88%), Postives = 114/251 (45.42%), Query Frame = 0
Query:   42 REALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYM----PPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALF 288
            R+ + AFYE +NP  LV++   EI+  + G+E  L A+LH++YG  P +        + +    +  P  +   +  + G S  +   A               F+A   L Q     + +  V+    AP  DN+ + R LLP +H  ++     P GP +                A   A+ PP+L  +AE  K GP  LL+ C   +  VVV VRR   +RGT TG L+GFD+H N+VL +  EA  
Sbjct:    6 RDRITAFYEKYNPENLVNI--PEILRVFSGREDVLCAKLHKKYGCAPDIVCQEAEVAEAAEILTEFDPSYTPKTARPSFGGSFDVRCSA---------------FNAHKALVQ-----NRLDNVL---SAPPLDNMYKCRQLLPRNHPQFLHTKTNPTGPTDRKPH-----------DATTGAKKPPILHAIAELHKEGPLSLLHACLMARSRVVVVVRRICSIRGTCTGYLKGFDKHMNVVLFDVTEAFI 220          
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|695413250|ref|XP_009525976.1| (hypothetical protein PHYSODRAFT_377272, partial [Phytophthora sojae] >gi|348677101|gb|EGZ16918.1| hypothetical protein PHYSODRAFT_377272, partial [Phytophthora sojae])

HSP 1 Score: 88.9669 bits (219), Expect = 4.025e-16
Identity = 88/270 (32.59%), Postives = 123/270 (45.56%), Query Frame = 0
Query:   45 LIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARAN----LLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWG-PKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLV-LEEAQEALFVRREEGKDRGTGEGEGAEGE 308
            L AFY  HNP    D  + EIV K+ G+E QL A+L ++YGE P                         D +++      G+  +A+    +   N      S  FDA   L Q P+   +    +PV  A   DN+ + RHLLP S          PK+ +   A  +A V KKT+   A  P L + LA+    GP  +L RC+ E+  V V VRR + +RGT +G L+ FD+H NLV L+  QE +     E   R   EG  A G+
Sbjct:   10 LRAFYAKHNPGN--DQNIAEIVRKFAGRERQLCAKLFKKYGEAP-------------------------DLTSVGDNDDQGVEGQAKALKPQPTVNSPLDFRSAQFDALKAL-QAPKKLLN----LPVATAYPLDNIQKCRHLLPESDASRQTLVTRPKKASPSVAEAKAAVTKKTSAVTA-TPSLFEQLADTYLEGPFRVLRRCFLERMRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQEFVPHNTHERLLREVREGNRAAGD 246          
The following BLAST results are available for this feature:
BLAST of EWM23394.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104406|gb|EWM23394.1|0.000e+0100.00ribonucleoprotein LSM [Nannochloropsis gaditana][more]
gi|553189282|ref|XP_005854970.1|8.344e-10697.53hypothetical protein NGA_2089820, partial [Nannoch... [more]
gi|1173935876|gb|OQR86928.1|2.724e-2233.06hypothetical protein ACHHYP_09738 [Achlya hypogyna... [more]
gi|698815314|ref|XP_009840686.1|4.612e-2130.77hypothetical protein H257_14536 [Aphanomyces astac... [more]
gi|953503126|emb|CEG35894.1|7.196e-2032.81Ribonucleoprotein LSM domain [Plasmopara halstedii... [more]
gi|1173931669|gb|OQR83990.1|1.296e-1930.39hypothetical protein THRCLA_10888, partial [Thraus... [more]
gi|301120756|ref|XP_002908105.1|6.414e-1730.89conserved hypothetical protein [Phytophthora infes... [more]
gi|566023043|gb|ETI45954.1|8.803e-1732.14hypothetical protein F443_09593 [Phytophthora para... [more]
gi|673028436|ref|XP_008868179.1|2.502e-1629.88hypothetical protein H310_05283 [Aphanomyces invad... [more]
gi|695413250|ref|XP_009525976.1|4.025e-1632.59hypothetical protein PHYSODRAFT_377272, partial [P... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7298rna7298Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications