EWM23394.1, cds7281 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|585104406|gb|EWM23394.1| (ribonucleoprotein LSM [Nannochloropsis gaditana]) HSP 1 Score: 904.82 bits (2337), Expect = 0.000e+0 Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 0
Query: 1 MSSPAPSHGFWSSPSSPPDGDASVPPSLPAASATPSKKTLLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRGRRAGRKHKLPGKRKEAQREQEDDSLVGTEEGQDQPAVNGGRTEEWEEDPEGGRKRKRAEARGGVEERQAGGEEASLAKHQKTGARQDQGGKDGGGEGVLRRTFPLVVVRGDNVVMVFEAAPARSTHAR 448
MSSPAPSHGFWSSPSSPPDGDASVPPSLPAASATPSKKTLLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRGRRAGRKHKLPGKRKEAQREQEDDSLVGTEEGQDQPAVNGGRTEEWEEDPEGGRKRKRAEARGGVEERQAGGEEASLAKHQKTGARQDQGGKDGGGEGVLRRTFPLVVVRGDNVVMVFEAAPARSTHAR
Sbjct: 1 MSSPAPSHGFWSSPSSPPDGDASVPPSLPAASATPSKKTLLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRGRRAGRKHKLPGKRKEAQREQEDDSLVGTEEGQDQPAVNGGRTEEWEEDPEGGRKRKRAEARGGVEERQAGGEEASLAKHQKTGARQDQGGKDGGGEGVLRRTFPLVVVRGDNVVMVFEAAPARSTHAR 448
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|553189282|ref|XP_005854970.1| (hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana CCMP526] >gi|553190240|ref|XP_005855153.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana CCMP526] >gi|422293907|gb|EKU21207.1| hypothetical protein NGA_2089810, partial [Nannochloropsis gaditana CCMP526] >gi|422294090|gb|EKU21390.1| hypothetical protein NGA_2089820, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 319.701 bits (818), Expect = 8.344e-106 Identity = 158/162 (97.53%), Postives = 159/162 (98.15%), Query Frame = 0
Query: 149 TFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQK 310
TFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAE LKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEA+EALFVRR EGKDRG GEGEGAEGEQK
Sbjct: 1 TFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAESLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAEEALFVRRGEGKDRGAGEGEGAEGEQK 162
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|1173935876|gb|OQR86928.1| (hypothetical protein ACHHYP_09738 [Achlya hypogyna]) HSP 1 Score: 105.916 bits (263), Expect = 2.724e-22 Identity = 82/248 (33.06%), Postives = 121/248 (48.79%), Query Frame = 0
Query: 42 REALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDT-LPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQ---LPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
R+ ++AFYE HNP + ++ EI+ + G+E L A+L ++YG P + L + T +PY EA+KA + SP FDAT L + LP M+S V+P DNL++ R LLP S +Y G + + A VA K A A R PPLL+ +A+ GP +L + + V V +RR + +RGT TG L+GFD+HFN++L + E
Sbjct: 6 RDRIVAFYEKHNPENVKNI--PEILRVFAGREDVLCAKLFKKYGCQPDLQTLAPVAAPVEYVYTPTYVPY------------------EAQKAG-SGPLDYRSPSFDATVALHERRPLPNMQS----VMP------LDNLNKCRPLLPESDPNYNGSIGQSKPKTKTA-----VAPKVAPAPQR-PPLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTE 216
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|698815314|ref|XP_009840686.1| (hypothetical protein H257_14536 [Aphanomyces astaci] >gi|574104415|gb|ETV69947.1| hypothetical protein H257_14536 [Aphanomyces astaci]) HSP 1 Score: 102.449 bits (254), Expect = 4.612e-21 Identity = 76/247 (30.77%), Postives = 113/247 (45.75%), Query Frame = 0
Query: 42 REALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGS--SIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYM-PPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
R+ ++AFYE HNP + ++ EI+ + G+E L A+LH++YG P + + + +LS S D + + + S G + AS A L+ D P DNL + R LLPP ++ P P + R K + A + PP+L +A+ TGP LL+RC K VVV +RR S +RGT TG L+GFD+H NLVL + +
Sbjct: 6 RDRIVAFYESHNPENVKNI--PEILRVFAGREDVLCAKLHKKYGCSPDI--VAKEDNELSAA-------ASYDPNFVPKTAPPSRGGPFDCRSASFNAHLALVRNRLDGASL------------------HHPALDNLYKCRMLLPPRDPQFIQPKVKPATPSVTTDR------KSKSTVAPKKPPVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMD 217
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|953503126|emb|CEG35894.1| (Ribonucleoprotein LSM domain [Plasmopara halstedii]) HSP 1 Score: 103.219 bits (256), Expect = 7.196e-20 Identity = 84/256 (32.81%), Postives = 122/256 (47.66%), Query Frame = 0
Query: 40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDE----------ARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
L+ L AFY HNP D + EIV K+ G+E QL A+L ++YGE P + + G +S DD ++ + I+S A SD + S FDA L Q PR +PVP A DN+ + RHLLP S + + A + +A+ KT+ AA P L + LA+ GP +L RC+ E+ V+V +RR + +RGT +G L+ FD+H NLVL + +
Sbjct: 5 LMEARLRAFYTKHNPDN--DQNIAEIVRKFAGRERQLCAKLLKKYGEAPDLTF-----GDVSTDQDD-----------VSKTTDAVIYSYAAYQSDFKPYPLVKATPTSLDFRSKQFDALKAL-QTPRRLLE----LPVPTAYPLDNIQKCRHLLPKSDVNRQT-LIVRPNKASPSTAKAIKTSKTSSPAA--PSLFEQLADTYLDGPFRVLRRCFLERLRVLVVIRRINSVRGTCSGFLKAFDKHMNLVLLDVSQ 234
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|1173931669|gb|OQR83990.1| (hypothetical protein THRCLA_10888, partial [Thraustotheca clavata]) HSP 1 Score: 102.449 bits (254), Expect = 1.296e-19 Identity = 86/283 (30.39%), Postives = 131/283 (46.29%), Query Frame = 0
Query: 40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPR--NGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALFVRREEGKDRGTGEGEGAEGEQKERRRSQRKRG 320
L +E +IAFY+ +NP L ++ EI+ + G+E L A+L ++YG P +P L + N + +LP ALN+G + SE A++ R L T L +P PL DNL++ R LLP S +Y G + AA VA T R P LL+VLA+ ++GP +L+ C + K V V +RR + +RGT G L+GFD+H N++L + E + + + + G +K R RG
Sbjct: 480 LKQERIIAFYKQYNPENLKNI--PEILRVFAGREDVLCAKLFKKYGCQPDLPTLEKKVNYAYQTSFVPYSLP------PALNNGP-LNFRSENFNANEALRHQL-----------TGL------------IPSQPL-DNLNKCRSLLPESDPNYNKSIGQTKPKPVAAP----VANATTPVPVR-PLLLEVLADRYESGPLSVLHACLKAKAKVCVVIRRVNSIRGTCFGFLKGFDKHMNMILLDVTERFLPQESDTSNASIHDWFRTPGVKKRYLRQLLIRG 724
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|301120756|ref|XP_002908105.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103136|gb|EEY61188.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 91.2781 bits (225), Expect = 6.414e-17 Identity = 76/246 (30.89%), Postives = 110/246 (44.72%), Query Frame = 0
Query: 40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
L+ E L AFY HNP D + +IV K+ G+E QL A+L ++YGE P + S D+A I A A+D + S FDA L Q P+ + + V P DN + RHLLP S + + + A + +A + A P L + LAE GP +L C+ E+ V V +RR + +RGT +G L+ FD+H NLVL + +
Sbjct: 5 LVEERLRAFYAKHNPGN--DQNIAQIVRKFAGRERQLCAKLFKKYGEAP--------------------DFTSAGDTA----KEKDITKAAGPATDSP-LDFRSAQFDALKAL-QTPKQQLKLPVVAAYP----LDNTQKCRHLLPESDVNRQTLVA-RLKKANPSAAEAKAVAVKKVPAPATPSLFEQLAETYLDGPFRVLRHCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQ 217
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|566023043|gb|ETI45954.1| (hypothetical protein F443_09593 [Phytophthora parasitica P1569] >gi|568048752|gb|ETM45783.1| hypothetical protein L914_09249 [Phytophthora parasitica]) HSP 1 Score: 91.2781 bits (225), Expect = 8.803e-17 Identity = 81/252 (32.14%), Postives = 115/252 (45.63%), Query Frame = 0
Query: 40 LLREALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAE--KASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPP----SHTDYMPPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQE 285
L+ E L AFY HNP D + EIV K+ G+E QL A+L ++YGE P DDT+ + + + + G + K +D + S FDA L L + +K +PV A DN+ + RHLLP T + P P AA A A A P L + LA+ GP +L RC+ E+ V V +RR + +RGT +G L+ FD+H NLVL + +
Sbjct: 5 LMEERLRAFYAKHNPGN--DQNIAEIVRKFAGRERQLCAKLFKKYGEAPDF-----------TSADDTVKERDVTRIPYPNATYEGDFKAYKLPKVTDSP-LDFRSAQFDA---LKALQTPKDQLK--LPVATAHPLDNIQKCRHLLPELDVNRQTLVVRPKKPSPSAADAKA-----AVVKKAPAPATPSLFEQLADTYLEGPFRVLRRCFLERMRVFVVIRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQ 232
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|673028436|ref|XP_008868179.1| (hypothetical protein H310_05283 [Aphanomyces invadans] >gi|574475796|gb|ETW02795.1| hypothetical protein H310_05283 [Aphanomyces invadans]) HSP 1 Score: 89.3521 bits (220), Expect = 2.502e-16 Identity = 75/251 (29.88%), Postives = 114/251 (45.42%), Query Frame = 0
Query: 42 REALIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARANLLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYM----PPWGPKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLVLEEAQEALF 288
R+ + AFYE +NP LV++ EI+ + G+E L A+LH++YG P + + + + P + + + G S + A F+A L Q + + V+ AP DN+ + R LLP +H ++ P GP + A A+ PP+L +AE K GP LL+ C + VVV VRR +RGT TG L+GFD+H N+VL + EA
Sbjct: 6 RDRITAFYEKYNPENLVNI--PEILRVFSGREDVLCAKLHKKYGCAPDIVCQEAEVAEAAEILTEFDPSYTPKTARPSFGGSFDVRCSA---------------FNAHKALVQ-----NRLDNVL---SAPPLDNMYKCRQLLPRNHPQFLHTKTNPTGPTDRKPH-----------DATTGAKKPPILHAIAELHKEGPLSLLHACLMARSRVVVVVRRICSIRGTCTGYLKGFDKHMNVVLFDVTEAFI 220
BLAST of EWM23394.1 vs. NCBI_GenBank
Match: gi|695413250|ref|XP_009525976.1| (hypothetical protein PHYSODRAFT_377272, partial [Phytophthora sojae] >gi|348677101|gb|EGZ16918.1| hypothetical protein PHYSODRAFT_377272, partial [Phytophthora sojae]) HSP 1 Score: 88.9669 bits (219), Expect = 4.025e-16 Identity = 88/270 (32.59%), Postives = 123/270 (45.56%), Query Frame = 0
Query: 45 LIAFYEVHNPSQLVDVLLDEIVAKYLGQESQLLARLHRRYGEMPRVPYLPRNGGKLSMGCDDTLPYKSMDDSALNHGSSIGIHSEAEKASDEARAN----LLSPHFDATFTLTQLPRMRSSVKAVIPVPDAPLFDNLSRSRHLLPPSHTDYMPPWG-PKEEAARAARRQALVAKKTAIAAARGPPLLQVLAEGLKTGPTGLLYRCYQEKKAVVVTVRRRSGLRGTVTGRLRGFDRHFNLV-LEEAQEALFVRREEGKDRGTGEGEGAEGE 308
L AFY HNP D + EIV K+ G+E QL A+L ++YGE P D +++ G+ +A+ + N S FDA L Q P+ + +PV A DN+ + RHLLP S PK+ + A +A V KKT+ A P L + LA+ GP +L RC+ E+ V V VRR + +RGT +G L+ FD+H NLV L+ QE + E R EG A G+
Sbjct: 10 LRAFYAKHNPGN--DQNIAEIVRKFAGRERQLCAKLFKKYGEAP-------------------------DLTSVGDNDDQGVEGQAKALKPQPTVNSPLDFRSAQFDALKAL-QAPKKLLN----LPVATAYPLDNIQKCRHLLPESDASRQTLVTRPKKASPSVAEAKAAVTKKTSAVTA-TPSLFEQLADTYLEGPFRVLRRCFLERMRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTQEFVPHNTHERLLREVREGNRAAGD 246 The following BLAST results are available for this feature:
BLAST of EWM23394.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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