rna729, rna729 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna729
Unique Name	rna729
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	432
Alignment location	CM002456.1:275480..276805 -

Link to JBrowse

Properties


Property Name	Value
Product	60s acidic ribosomal protein
Orig transcript id	gnl\|cribi\|Naga_100247g11.2330.mrna
Orig protein id	gnl\|cribi\|Naga_100247g11.2330
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:275480..276805 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100247g11	gene698	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna729	rna729-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29947.1	cds729	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:275480..276805-
coding sequence from alignment at CM002456.1:275480..276805-

mRNA sequence

>rna729 ID=rna729|Name=rna729|organism=Nannochloropsis gaditana|type=mRNA|length=432bp
ATGGTGGAGGTCGATGGCAGGGAAGCCGAAAATGCGGGGCAGGACCGTCG
CGGCCCCCTCTCCGAACAAAGTGAAGCCCGAGTCGCGAATAACGACCGAG
CGCAAAACATGCCGGGACCCGCTAACAATCTAGGCGGCTGGCCGCTATTC
GTCCTCTTTCTTGCCTACGCGATGCTCCTCTACGCGCGCGACGGAACGTC
GGAACCCAGCAACGGACGGAAAGATGCGACGAATTCCGCACCTCCCCTTG
GGGACTCTGGTTCTTCCTCTGTCGAGATTTTACCGGAGGCTCCACTCCAT
GCCGCACGCGCACAAACATCCTCGCAAGACACAAAATCCTATGTCTTTTC
GACATGGACGTTCGAAGGCGCCAAAAAGAAACATCCGCTTCAACCACACC
CGCGAATCGTCGTGCAATACTGCACCAGCTGA

protein sequence of rna729

>rna729-protein ID=rna729-protein|Name=rna729|organism=Nannochloropsis gaditana|type=polypeptide|length=118bp
MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPM
IFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKE
EDADLGGAMDMFGGGDGY

mRNA from alignment at CM002456.1:275480..276805-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna729 ID=rna729|Name=rna729|organism=Nannochloropsis gaditana|type=mRNA|length=1326bp|location=Sequence derived from alignment at CM002456.1:275480..276805- (Nannochloropsis gaditana)
TGCCGCCGCACGTTCGATCGCCTCAATTCTTTTCCCTACCCCGCCCCGCC
TACAATGCGCACAATTTGACCTAAATTTCTCTCTCTCTTTCATATTCACG
TAGGCCCTTTCTTATTTCCTGTGTCCAGCGCGCGTGTTTCTGCCTTTTCC
GGGCTTAAACGTGATTCACGGCCACCACTAAGCAGTCTCCAAGCCTATTC
CATCACTCCGCCATACAACATGTCTAACCTGACGAAGGAACAGAAGGACG
AGCTTGTCACTTCTTACGCAGCCCTGGCTCTCTATGATGGCGATGTAAGT
GCACATGTACATGCTCGGGAAGGCTTCATCTTTGTCATGGGCGAGGCAGT
TCACAGGTGGCTCTGTCCTGGCGTGACGCGCGTAGGAACACCCTTCTGTG
CGGAAGCTGGCGCCTGATGATATGTTCTCTTCTCATGGACAATCCACTCA
GAAGGCGTGTTTTTTATTTCACTTTCCTAAACCTCATCACTTCCCTACCC
ACGCCTTATCCCGTATGCCTCCCTCCTGCCTCCTCGATACCAGTCTGAAG
TCTCCTCCGAGCAACTCAGTGCTTTCATCGCGGCAACCGGGAATGAAGTA
GAGCCTTACTGGCCCATGATTTTCTCCAAGTTCCTGGGGGGCAAAATGGA
GGATCTGATCACCAGTGTGGGCGGTGGGGGAGGGGGCGGGGCTGGTGCGG
CGCCCGCTCAGGACGCTTCCCCAGCCGCTGATGCCGGTGCCAAGAAGGAG
AAGAAGGAGGAGAAGGAAGAGGATGCAGACTTGGGCGGAGCTATGGATAT
GTTTGGGGTATGTGGGCGGGGGAGAGGCGAACAGGTGGACGTGGGGGAGA
TAAGCGGGTGCATGGGTGATGTCGTTCGTAGGTCAGGGCGACCCCTAGTC
GTGTCCGCCGTGTGTGCATATTTGAAGGCAAAAAGCACTCCATATGTCTC
AATCTTTCACGACGATCGTAATTTTTTAAATACCGCAGGGCGGCGACGGC
TATTAAAGCGGTGTGGGCGCGTGTGACCGCCCGCTGTGCGGTTACCAGCC
CTCGTGGCCTTCGAAGGGTTCCCTCTCTGGCGATTTTCGCGCTAATATGA
CCTTCAAGGCCCAGGGCGACGCTGACAGGTGGCCATTGAGGAGGCCGGTT
GGAGGGGTTGGGAGCTGAGGCAGGGGCTGTGCGTGGTGCGGAAGCTGGAT
GGTCCTCATGTCCGGCGCTGGTCCCACGAAGAGGGAGGCAGCAGAAAGAA
AAAGACAGGGGGAAAAACCATCCAAGTGTCTTGGCGCCGGCCATCGTCGT
CCTTTCTTTCATGCATGGCCGGGGGA

Coding sequence (CDS) from alignment at CM002456.1:275480..276805-

>rna729 ID=rna729|Name=rna729|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002456.1:275480..276805- (Nannochloropsis gaditana)
GGCGGCGACGGCTATTAATCTGAAGTCTCCTCCGAGCAACTCAGTGCTTT
CATCGCGGCAACCGGGAATGAAGTAGAGCCTTACTGGCCCATGATTTTCT
CCAAGTTCCTGGGGGGCAAAATGGAGGATCTGATCACCAGTGTGGGCGGT
GGGGGAGGGGGCGGGGCTGGTGCGGCGCCCGCTCAGGACGCTTCCCCAGC
CGCTGATGCCGGTGCCAAGAAGGAGAAGAAGGAGGAGAAGGAAGAGGATG
CAGACTTGGGCGGAGCTATGGATATGTTTGGGATGTCTAACCTGACGAAG
GAACAGAAGGACGAGCTTGTCACTTCTTACGCAGCCCTGGCTCTCTATGA
TGGCGATGGCGGCGACGGCTATTAATCTGAAGTCTCCTCCGAGCAACTCA
GTGCTTTCATCGCGGCAACCGGGAATGAAGTAGAGCCTTACTGGCCCATG
ATTTTCTCCAAGTTCCTGGGGGGCAAAATGGAGGATCTGATCACCAGTGT
GGGCGGTGGGGGAGGGGGCGGGGCTGGTGCGGCGCCCGCTCAGGACGCTT
CCCCAGCCGCTGATGCCGGTGCCAAGAAGGAGAAGAAGGAGGAGAAGGAA
GAGGATGCAGACTTGGGCGGAGCTATGGATATGTTTGGGATGTCTAACCT
GACGAAGGAACAGAAGGACGAGCTTGTCACTTCTTACGCAGCCCTGGCTC
TCTATGATGGCGATGGCGGCGACGGCTATTAATCTGAAGTCTCCTCCGAG
CAACTCAGTGCTTTCATCGCGGCAACCGGGAATGAAGTAGAGCCTTACTG
GCCCATGATTTTCTCCAAGTTCCTGGGGGGCAAAATGGAGGATCTGATCA
CCAGTGTGGGCGGTGGGGGAGGGGGCGGGGCTGGTGCGGCGCCCGCTCAG
GACGCTTCCCCAGCCGCTGATGCCGGTGCCAAGAAGGAGAAGAAGGAGGA
GAAGGAAGAGGATGCAGACTTGGGCGGAGCTATGGATATGTTTGGGATGT
CTAACCTGACGAAGGAACAGAAGGACGAGCTTGTCACTTCTTACGCAGCC
CTGGCTCTCTATGATGGCGAT

Synonyms

Publications