EWM29947.1, cds729 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|585112535|gb|EWM29947.1| (60s acidic ribosomal protein [Nannochloropsis gaditana]) HSP 1 Score: 231.106 bits (588), Expect = 9.508e-77 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
Query: 1 MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY 118
MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY
Sbjct: 1 MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY 118
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|698805674|ref|XP_009835866.1| (hypothetical protein H257_10853, partial [Aphanomyces astaci] >gi|574109275|gb|ETV74779.1| hypothetical protein H257_10853, partial [Aphanomyces astaci]) HSP 1 Score: 94.3597 bits (233), Expect = 2.315e-22 Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY 118
+TKEQ DEL SYAAL L+DGD+E++SE LS I A+GNEVEPYWP +F+ L GK+ +LITS GGG GG A A A A+ A A +K++++++EEDADLGG MDMFGG Y
Sbjct: 27 ITKEQHDELAVSYAALVLFDGDAEITSEALSNVITASGNEVEPYWPTLFAGLLSKEGKLLELITS-GGGIGGAAAAPAAGAAAGGAAAKEEKKEEKKEEEDADLGGGMDMFGGSSDY 142
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|325188052|emb|CCA22595.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 90.5077 bits (223), Expect = 3.236e-21 Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADL 105
L+KEQ DEL SYA+L L+DG++E++S+ L + I A+GNEVEPYWP +F+ FL G++ DLITS G G G A+ S DAGA K++ +E+E D DL
Sbjct: 3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITSGGPSSGAGGAASSGNATSAEEDAGAAKDEPKEEEADMDL 106
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|635369491|emb|CCI42422.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-19 Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADL 105
L+KEQ DEL SYA+L L+DG++E++S+ L + I A+GNEVEPYWP +F+ FL G++ DLITS G GGG AA A+ DA A K++ +E+E D DL
Sbjct: 3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITSGGPSAGGGGAAASGNTAAGEEDATAAKDEPKEEEADMDL 106
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|1173950845|gb|OQR98783.1| (hypothetical protein ACHHYP_07873 [Achlya hypogyna]) HSP 1 Score: 86.2705 bits (212), Expect = 1.618e-19 Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLIT 65
LTKEQ DEL +YA++ L+DG++E++SE LS IAA+GNEVEPYWPM+F+ L GKM +LIT
Sbjct: 3 LTKEQHDELCVAYASMILFDGEAEITSESLSNVIAASGNEVEPYWPMLFANLLSKDGKMLELIT 66
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|813102835|ref|XP_012193943.1| (hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65] >gi|641541870|gb|KDO35615.1| hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 86.2705 bits (212), Expect = 1.904e-19 Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITS 66
LTKEQ DEL +YA++ L+DG++E++SE LS I A+GNEVEPYWPM+F+ L GKM +LITS
Sbjct: 3 LTKEQHDELCVAYASMILFDGEAEITSEALSNVIVASGNEVEPYWPMLFANLLSQDGKMLELITS 67
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|673029252|ref|XP_008868587.1| (hypothetical protein H310_05609 [Aphanomyces invadans] >gi|574476204|gb|ETW03203.1| hypothetical protein H310_05609 [Aphanomyces invadans]) HSP 1 Score: 85.5001 bits (210), Expect = 3.498e-19 Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITS 66
+TKEQ DEL SYAAL L+DG++E++SE LS IAA+GNEVEPYWP +F+ L GKM +LITS
Sbjct: 3 ITKEQHDELAVSYAALILFDGEAEITSEALSTVIAASGNEVEPYWPTLFAGLLSKDGKMLELITS 67
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|1173952324|gb|OQS00040.1| (hypothetical protein THRCLA_21764 [Thraustotheca clavata]) HSP 1 Score: 85.5001 bits (210), Expect = 3.857e-19 Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLIT 65
LTKEQ DEL +YA++ L+DG+ E++SE LS IAA+GNEVEPYWPM+F+ L GKM +LIT
Sbjct: 3 LTKEQHDELCVAYASMILFDGEVEITSEALSNVIAASGNEVEPYWPMLFANLLSKEGKMLELIT 66
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|669143462|ref|XP_008607293.1| (hypothetical protein SDRG_03437 [Saprolegnia diclina VS20] >gi|530740990|gb|EQC39232.1| hypothetical protein SDRG_03437 [Saprolegnia diclina VS20]) HSP 1 Score: 85.5001 bits (210), Expect = 5.632e-19 Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 0
Query: 4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITS 66
LTKEQ DEL +YA++ L+DG++E++SE L+ I A+GNEVEPYWPM+F+ L GKM +LITS
Sbjct: 30 LTKEQHDELCVAYASMILFDGEAEITSEALANVIVASGNEVEPYWPMLFANLLSQDGKMLELITS 94
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|299117231|emb|CBN75193.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 84.3445 bits (207), Expect = 1.098e-18 Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0
Query: 3 NLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGK-MEDLI 64
+++KE DEL TSYAALALYDGD+E++S+QLSA I ATGNEVE YWP +FS FL +E LI
Sbjct: 2 SISKELHDELCTSYAALALYDGDAEITSDQLSALITATGNEVEGYWPTLFSGFLAKAGIEKLI 64 The following BLAST results are available for this feature:
BLAST of EWM29947.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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