EWM29947.1, cds729 (CDS) Nannochloropsis gaditana

Overview
NameEWM29947.1
Unique Namecds729
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:276512..276586 -
Alignment locationCM002456.1:275999..276262 -
Alignment locationCM002456.1:275800..275817 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29947.1
Product60s acidic ribosomal protein
Orig transcript idgnl|cribi|Naga_100247g11.2330.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:276512..276586 -
CM002456.1supercontigCM002456.1:275999..276262 -
CM002456.1supercontigCM002456.1:275800..275817 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Homology
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|585112535|gb|EWM29947.1| (60s acidic ribosomal protein [Nannochloropsis gaditana])

HSP 1 Score: 231.106 bits (588), Expect = 9.508e-77
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0
Query:    1 MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY 118
            MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY
Sbjct:    1 MSNLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY 118          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|698805674|ref|XP_009835866.1| (hypothetical protein H257_10853, partial [Aphanomyces astaci] >gi|574109275|gb|ETV74779.1| hypothetical protein H257_10853, partial [Aphanomyces astaci])

HSP 1 Score: 94.3597 bits (233), Expect = 2.315e-22
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADLGGAMDMFGGGDGY 118
            +TKEQ DEL  SYAAL L+DGD+E++SE LS  I A+GNEVEPYWP +F+  L   GK+ +LITS GGG GG A A  A  A+  A A  +K++++++EEDADLGG MDMFGG   Y
Sbjct:   27 ITKEQHDELAVSYAALVLFDGDAEITSEALSNVITASGNEVEPYWPTLFAGLLSKEGKLLELITS-GGGIGGAAAAPAAGAAAGGAAAKEEKKEEKKEEEDADLGGGMDMFGGSSDY 142          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|325188052|emb|CCA22595.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 90.5077 bits (223), Expect = 3.236e-21
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADL 105
            L+KEQ DEL  SYA+L L+DG++E++S+ L + I A+GNEVEPYWP +F+ FL   G++ DLITS G   G G  A+     S   DAGA K++ +E+E D DL
Sbjct:    3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITSGGPSSGAGGAASSGNATSAEEDAGAAKDEPKEEEADMDL 106          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|635369491|emb|CCI42422.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 86.6557 bits (213), Expect = 1.211e-19
Identity = 53/104 (50.96%), Postives = 72/104 (69.23%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITSVGGGGGGGAGAAPAQDASPAADAGAKKEKKEEKEEDADL 105
            L+KEQ DEL  SYA+L L+DG++E++S+ L + I A+GNEVEPYWP +F+ FL   G++ DLITS G   GGG  AA    A+   DA A K++ +E+E D DL
Sbjct:    3 LSKEQHDELCVSYASLILFDGEAEITSDALMSVITASGNEVEPYWPTLFAGFLSKEGRIMDLITSGGPSAGGGGAAASGNTAAGEEDATAAKDEPKEEEADMDL 106          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|1173950845|gb|OQR98783.1| (hypothetical protein ACHHYP_07873 [Achlya hypogyna])

HSP 1 Score: 86.2705 bits (212), Expect = 1.618e-19
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLIT 65
            LTKEQ DEL  +YA++ L+DG++E++SE LS  IAA+GNEVEPYWPM+F+  L   GKM +LIT
Sbjct:    3 LTKEQHDELCVAYASMILFDGEAEITSESLSNVIAASGNEVEPYWPMLFANLLSKDGKMLELIT 66          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|813102835|ref|XP_012193943.1| (hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65] >gi|641541870|gb|KDO35615.1| hypothetical protein SPRG_00459 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 86.2705 bits (212), Expect = 1.904e-19
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITS 66
            LTKEQ DEL  +YA++ L+DG++E++SE LS  I A+GNEVEPYWPM+F+  L   GKM +LITS
Sbjct:    3 LTKEQHDELCVAYASMILFDGEAEITSEALSNVIVASGNEVEPYWPMLFANLLSQDGKMLELITS 67          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|673029252|ref|XP_008868587.1| (hypothetical protein H310_05609 [Aphanomyces invadans] >gi|574476204|gb|ETW03203.1| hypothetical protein H310_05609 [Aphanomyces invadans])

HSP 1 Score: 85.5001 bits (210), Expect = 3.498e-19
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITS 66
            +TKEQ DEL  SYAAL L+DG++E++SE LS  IAA+GNEVEPYWP +F+  L   GKM +LITS
Sbjct:    3 ITKEQHDELAVSYAALILFDGEAEITSEALSTVIAASGNEVEPYWPTLFAGLLSKDGKMLELITS 67          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|1173952324|gb|OQS00040.1| (hypothetical protein THRCLA_21764 [Thraustotheca clavata])

HSP 1 Score: 85.5001 bits (210), Expect = 3.857e-19
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLIT 65
            LTKEQ DEL  +YA++ L+DG+ E++SE LS  IAA+GNEVEPYWPM+F+  L   GKM +LIT
Sbjct:    3 LTKEQHDELCVAYASMILFDGEVEITSEALSNVIAASGNEVEPYWPMLFANLLSKEGKMLELIT 66          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|669143462|ref|XP_008607293.1| (hypothetical protein SDRG_03437 [Saprolegnia diclina VS20] >gi|530740990|gb|EQC39232.1| hypothetical protein SDRG_03437 [Saprolegnia diclina VS20])

HSP 1 Score: 85.5001 bits (210), Expect = 5.632e-19
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 0
Query:    4 LTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLG--GKMEDLITS 66
            LTKEQ DEL  +YA++ L+DG++E++SE L+  I A+GNEVEPYWPM+F+  L   GKM +LITS
Sbjct:   30 LTKEQHDELCVAYASMILFDGEAEITSEALANVIVASGNEVEPYWPMLFANLLSQDGKMLELITS 94          
BLAST of EWM29947.1 vs. NCBI_GenBank
Match: gi|299117231|emb|CBN75193.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.3445 bits (207), Expect = 1.098e-18
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 0
Query:    3 NLTKEQKDELVTSYAALALYDGDSEVSSEQLSAFIAATGNEVEPYWPMIFSKFLGGK-MEDLI 64
            +++KE  DEL TSYAALALYDGD+E++S+QLSA I ATGNEVE YWP +FS FL    +E LI
Sbjct:    2 SISKELHDELCTSYAALALYDGDAEITSDQLSALITATGNEVEGYWPTLFSGFLAKAGIEKLI 64          
The following BLAST results are available for this feature:
BLAST of EWM29947.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112535|gb|EWM29947.1|9.508e-77100.0060s acidic ribosomal protein [Nannochloropsis gadi... [more]
gi|698805674|ref|XP_009835866.1|2.315e-2257.26hypothetical protein H257_10853, partial [Aphanomy... [more]
gi|325188052|emb|CCA22595.1|3.236e-2150.00conserved hypothetical protein [Albugo laibachii N... [more]
gi|635369491|emb|CCI42422.1|1.211e-1950.96unnamed protein product [Albugo candida][more]
gi|1173950845|gb|OQR98783.1|1.618e-1960.94hypothetical protein ACHHYP_07873 [Achlya hypogyna... [more]
gi|813102835|ref|XP_012193943.1|1.904e-1960.00hypothetical protein SPRG_00459 [Saprolegnia paras... [more]
gi|673029252|ref|XP_008868587.1|3.498e-1963.08hypothetical protein H310_05609 [Aphanomyces invad... [more]
gi|1173952324|gb|OQS00040.1|3.857e-1960.94hypothetical protein THRCLA_21764 [Thraustotheca c... [more]
gi|669143462|ref|XP_008607293.1|5.632e-1958.46hypothetical protein SDRG_03437 [Saprolegnia dicli... [more]
gi|299117231|emb|CBN75193.1|1.098e-1865.08conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna729rna729Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications