rna7281, rna7281 (mRNA) Nannochloropsis gaditana

Overview
Namerna7281
Unique Namerna7281
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length492
Alignment locationCM002471.1:223305..225133 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100077g10.5206.mrna
Orig protein idgnl|cribi|Naga_100077g10.5206
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:223305..225133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100077g10gene7046Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7281rna7281-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23416.1cds7264Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7281 ID=rna7281|Name=rna7281|organism=Nannochloropsis gaditana|type=mRNA|length=492bp
ATGCTCAGTATCACAGACGTGGACTTTAACTACCAATACGAGTATTTAGG
AGCAAAGGAACGACTTGTGGTCACTCCTCTTACAGACAGGTGCTACATTA
CACTAGCCCAAGCTTTGGGAATGTATTTCGGGGGTGCACCTGCCGGACCG
GCGGGAACGGGCAAGACCGAGACTGTCAAAGATTTGGGCCGTACTTTGGG
TCTCTTCGTGGTTGTGACAAATTGTACCGACCAGCAAAAGTACACAGATT
GCGCAAAGATATTTAAAGGCCTATGCCAGGGTGGTTTGTGGGGCTGCTTC
GATGAATTCAATCGCATTCTGTTGCCTGTTTTATCAGTTGTTGCCCAGCA
AGTCCTTGCAATCCAAAACGCCAAGAAAGCCGGAGTAGAATATTTTCAGT
TTCCCGGCGATTCTCAAAATGTGCTTCTTAAACCCTGCTGTGGGTTTTTC
ATCACGATGAACCCCGGATACGCAGGACGTTGCGAGACATGA
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protein sequence of rna7281

>rna7281-protein ID=rna7281-protein|Name=rna7281|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MSGSMKPYKWFSGTSGWIHELLAKLPKDMQTKIRSWALFRPDDINDLYPF
PRNRISYPGVERIKGYRYPAPGSRPKVNVPQSESDDKLYDIKYFDHDTRR
RPAEVFSWSPDFKRVALPDSPEPAKLMGSPGNKNPAVLAYDPTGLRSAMS
ATNQELEKALDRAMPNHNVRYAWQGEEEQIVKDCEAKGLPVPPGKRAKFA
VPAMATQRRW
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mRNA from alignment at CM002471.1:223305..225133+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7281 ID=rna7281|Name=rna7281|organism=Nannochloropsis gaditana|type=mRNA|length=1829bp|location=Sequence derived from alignment at CM002471.1:223305..225133+ (Nannochloropsis gaditana)
AGGCATGAAAGGACGGAAAGTGTCGGTATAGTGCTGTTTCATTTGTCGGC
ACACGCGGTGTTAAGACTATGACAGTGGTGcctgatttttttttaaccAG
ATGCACCGCCGAGGGTGTGGAGACAGAGGCGATCCTCAGAGACGATGTGC
ACTGTGCGAAACCCAACCCGTTCACAACTTCACACCTCGTAAACTGTACA
GTGTAGGTGTACGGTGTAGGCAACAAGACCAGGTGCACTCGTTGTGGTTT
TTGACAGGCGAGACGGCAACAGTTGTGCGTGGACACAAAGCACCTCCGTA
GTTTTGATCATGAGTGGCAGCATGAAGCCGTATAAGTGGTTCTCTGGCAC
GTCCGGATGGATTCATGAGCTCCTGGCCAAACTTCCCAAGGACATGCAGA
CCAAGGTGCGTGAAAAGGGAACGTTCGCTTCTCTTTGAAGACCCGAGAGC
TTGTGTCGCATAGGGTTTATTCTCTCCCTTGCTTAGACGCAGTTCTTTCT
GACGCCAtgacctctttttccttccttgtccccaTGATCCTCACAGATCC
GATCATGGGCCCTATTCAGGCCAGATGACATCAATGATCTTTACCCATTT
CCTCGTAATCGAATCTCCTATCCCGGCGTGGAGCGGATCAAAGGGTATCG
GTACCCCGCCCCGGGGTCCCGGCCGAAAGTGAACGTGCCGCAAAGCGAGA
GCGACGACAAGTATGATATATGTATACATATGGGGGCTGCAAGCATGAAC
GGGAGGGTGCAGAACCTGTCctgaggacatggagggaagacggtTGCGGT
GAAGAAAGGCAAAGATTACCTGGCTCCAGCTAGGAGATCAAACGACTACC
ATCCTTGTGCCAGCGCCGGCTCACCCACCTCCCAATTTCCaccgctcccc
tcccaggcttTACGATATCAAGTATTTCGATCACGACACCCGCCGGCGAC
CGGCGGAAGTCTTTTCCTGGTCTCCTGATTTCAAGCGCGTGGCGCTACCG
GACTCTCCCGAACCGGCCAAGCTGATGGGCAGGTGAGACGCGGCTCCGGA
TAGGGAGGACATTGGCTGGAACTCTCTATCAAATGGATTCCATGTATTTT
GCCATCAACATGCGGAACTGGTTCGAGGCGACATGCAAATTTTCTTATCC
CGGCCGCTCTTCTCAATGGAAGTTGGCGCCCGTGAACCCTtacgcccctc
cccatcgtctCCGGATGGCTTGTGCTCCCAGAGTGTCAGACCCTCCCGAT
CTCCTCTCGCCTCGACATCTTGCCTGTGGCATCAGCCCGGGGGTGTGTGC
TACCACCCTTCTTGCTTTCAGCATGCACGccctcactttctccctctgtc
tCTCGCCATGTCCCTTCCGTTCATACACCCCGCAGCCCCGGCAACAAGAA
TCCAGCCGTGCTGGCGTACGATCCCACGGGCCTTCGAAGCGCCATGAGTG
CCACGAACCAAGAACTAGAGAAAGCCTTGGACAGGGCCATGCCTAACCAC
AACGTCCGGTATGCTtggcagggcgaggaggagcaaattGTCAAGGATTG
CGAGGCGAAGGGCTTACCGGTGCCCCCGGGGAAGCGGGCCAAATTTGCGG
TGCCTGCCATGGCAACTCAACGGCggtggtagggagggagaggtcagggg
agggagggcatgatgTGTATGTAGGACGAGATAAGTGGATACGGTAgtcg
aaggaggatggatcAGCAGGAGTAGACAGAAAGACCGTTATCATGGAAGA
GTGTTGCGATAAGGACACATAGCCTGGCGCGCTTTGACGCTGTTTTTTGG
GCACCGTCCCCAGGTTTTTCTTTATTAGC
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Coding sequence (CDS) from alignment at CM002471.1:223305..225133+

>rna7281 ID=rna7281|Name=rna7281|organism=Nannochloropsis gaditana|type=CDS|length=2532bp|location=Sequence derived from alignment at CM002471.1:223305..225133+ (Nannochloropsis gaditana)
ATGAGTGGCAGCATGAAGCCGTATAAGTGGTTCTCTGGCACGTCCGGATG
GATTCATGAGCTCCTGGCCAAACTTCCCAAGGACATGCAGACCAAGATCC
GATCATGGGCCCTATTCAGGCCAGATGACATCAATGATCTTTACCCATTT
CCTCGTAATCGAATCTCCTATCCCGGCGTGGAGCGGATCAAAGGGTATCG
GTACCCCGCCCCGGGGTCCCGGCCGAAAGTGAACGTGCCGCAAAGCGAGA
GCGACGACAAgcttTACGATATCAAGTATTTCGATCACGACACCCGCCGG
CGACCGGCGGAAGTCTTTTCCTGGTCTCCTGATTTCAAGCGCGTGGCGCT
ACCGGACTCTCCCGAACCGGCCAAGCTGATGGGCAGCCCCGGCAACAAGA
ATCCAGCCGTGCTGGCGTACGATCCCACGGGCCTTCGAAGCGCCATGAGT
GCCACGAACCAAGAACTAGAGAAAGCCTTGGACAGGGCCATGCCTAACCA
CAACGTCCGGTATGCTtggcagggcgaggaggagcaaattGTCAAGGATT
GCGAGGCGAAGGGCTTACCGGTGCCCCCGGGGAAGCGGGCCAAATTTGCG
GTGCCTGCCATGGCAACTCAACGGCggtggtagATGAGTGGCAGCATGAA
GCCGTATAAGTGGTTCTCTGGCACGTCCGGATGGATTCATGAGCTCCTGG
CCAAACTTCCCAAGGACATGCAGACCAAGATCCGATCATGGGCCCTATTC
AGGCCAGATGACATCAATGATCTTTACCCATTTCCTCGTAATCGAATCTC
CTATCCCGGCGTGGAGCGGATCAAAGGGTATCGGTACCCCGCCCCGGGGT
CCCGGCCGAAAGTGAACGTGCCGCAAAGCGAGAGCGACGACAAgcttTAC
GATATCAAGTATTTCGATCACGACACCCGCCGGCGACCGGCGGAAGTCTT
TTCCTGGTCTCCTGATTTCAAGCGCGTGGCGCTACCGGACTCTCCCGAAC
CGGCCAAGCTGATGGGCAGCCCCGGCAACAAGAATCCAGCCGTGCTGGCG
TACGATCCCACGGGCCTTCGAAGCGCCATGAGTGCCACGAACCAAGAACT
AGAGAAAGCCTTGGACAGGGCCATGCCTAACCACAACGTCCGGTATGCTt
ggcagggcgaggaggagcaaattGTCAAGGATTGCGAGGCGAAGGGCTTA
CCGGTGCCCCCGGGGAAGCGGGCCAAATTTGCGGTGCCTGCCATGGCAAC
TCAACGGCggtggtagATGAGTGGCAGCATGAAGCCGTATAAGTGGTTCT
CTGGCACGTCCGGATGGATTCATGAGCTCCTGGCCAAACTTCCCAAGGAC
ATGCAGACCAAGATCCGATCATGGGCCCTATTCAGGCCAGATGACATCAA
TGATCTTTACCCATTTCCTCGTAATCGAATCTCCTATCCCGGCGTGGAGC
GGATCAAAGGGTATCGGTACCCCGCCCCGGGGTCCCGGCCGAAAGTGAAC
GTGCCGCAAAGCGAGAGCGACGACAAgcttTACGATATCAAGTATTTCGA
TCACGACACCCGCCGGCGACCGGCGGAAGTCTTTTCCTGGTCTCCTGATT
TCAAGCGCGTGGCGCTACCGGACTCTCCCGAACCGGCCAAGCTGATGGGC
AGCCCCGGCAACAAGAATCCAGCCGTGCTGGCGTACGATCCCACGGGCCT
TCGAAGCGCCATGAGTGCCACGAACCAAGAACTAGAGAAAGCCTTGGACA
GGGCCATGCCTAACCACAACGTCCGGTATGCTtggcagggcgaggaggag
caaattGTCAAGGATTGCGAGGCGAAGGGCTTACCGGTGCCCCCGGGGAA
GCGGGCCAAATTTGCGGTGCCTGCCATGGCAACTCAACGGCggtggtagA
TGAGTGGCAGCATGAAGCCGTATAAGTGGTTCTCTGGCACGTCCGGATGG
ATTCATGAGCTCCTGGCCAAACTTCCCAAGGACATGCAGACCAAGATCCG
ATCATGGGCCCTATTCAGGCCAGATGACATCAATGATCTTTACCCATTTC
CTCGTAATCGAATCTCCTATCCCGGCGTGGAGCGGATCAAAGGGTATCGG
TACCCCGCCCCGGGGTCCCGGCCGAAAGTGAACGTGCCGCAAAGCGAGAG
CGACGACAAgcttTACGATATCAAGTATTTCGATCACGACACCCGCCGGC
GACCGGCGGAAGTCTTTTCCTGGTCTCCTGATTTCAAGCGCGTGGCGCTA
CCGGACTCTCCCGAACCGGCCAAGCTGATGGGCAGCCCCGGCAACAAGAA
TCCAGCCGTGCTGGCGTACGATCCCACGGGCCTTCGAAGCGCCATGAGTG
CCACGAACCAAGAACTAGAGAAAGCCTTGGACAGGGCCATGCCTAACCAC
AACGTCCGGTATGCTtggcagggcgaggaggagcaaattGTCAAGGATTG
CGAGGCGAAGGGCTTACCGGTGCCCCCGGGGAAGCGGGCCAAATTTGCGG
TGCCTGCCATGGCAACTCAACGGCggtggtag
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Synonyms
Publications