rna7280, rna7280 (mRNA) Nannochloropsis gaditana

Overview
Namerna7280
Unique Namerna7280
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length798
Alignment locationCM002471.1:215760..216941 -

Link to JBrowse

Properties
Property NameValue
Productdynein heavy chain
Orig transcript idgnl|cribi|Naga_100077g9.5195.mrna
Orig protein idgnl|cribi|Naga_100077g9.5195
GeneDYHC11
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:215760..216941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
DYHC11gene7045Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7280rna7280-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23405.1cds7263Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7280 ID=rna7280|Name=rna7280|organism=Nannochloropsis gaditana|type=mRNA|length=798bp
GCAGGGAGGTCTCACGGTACCTCTGAATATATTCCTCTTCCAAGAAATTC
AACGCATGCAGCGGATCATAAGCAAGGTAAAAATAACGTTACAGCAGCTG
CAACTTGCGATCAAGGGTGAAGTGGTTATGTCAGAAGAACTAGCTTCGAC
GCTTCTAGCCGTATACGACGCGAAGGTCCCTCACAGCTGGGTCTTCACCG
TGGCTGGCGACGAGTTTTCCTGGATCCTTCCCACGCTTGGGCTGTGGTTC
TCGTCGCTCTTGCAGCGGGACGAACAGCTTCGTACGTGGCTGAACCACGG
TCGACCGAATTCATACTGGCTGCCCGGGTTTTCAAACCCTCAAGGCCTAC
TAACGGCCATGAAACAGGAGGTCACACGTCGACATAAAGCAGACAAGTGG
GCCTTGGATGATGTGGTCTACCACACTGAGGTCACCAGCTATGAGCGGCC
TGAACAGATTCGTTCTCCCCCCTCGGAGGGTATTTACGTGTATGGATTAT
CATTGGAAGGGGCGGGCTGGAACAAAATCGAAGGAACACTGGTGGAAAGC
GAGGCAAAAAAGCTTTTCGTCCCGTTACCTGTATTGCACGTGACCGCAAA
CACCAAAAGCGAGGAATTCAAAGTGCGAAAAGACATATTCGGGACACAGG
GTCCCTACGAGGCGCCGTGCTACAAGTATCCTTGCCGAACCGACCGCTTC
ATGGTGATGATGGTAACCCTCAAAGGGGGTGATCGCCCGCCCACCCATTG
GGCCTTACGCGGCACTGCCCTGCTCTGCAATATCGAAGGGTAGGTTGT
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protein sequence of rna7280

>rna7280-protein ID=rna7280-protein|Name=rna7280|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MLSITDVDFNYQYEYLGAKERLVVTPLTDRCYITLAQALGMYFGGAPAGP
AGTGKTETVKDLGRTLGLFVVVTNCTDQQKYTDCAKIFKGLCQGGLWGCF
DEFNRILLPVLSVVAQQVLAIQNAKKAGVEYFQFPGDSQNVLLKPCCGFF
ITMNPGYAGRCET
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mRNA from alignment at CM002471.1:215760..216941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7280 ID=rna7280|Name=rna7280|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp|location=Sequence derived from alignment at CM002471.1:215760..216941- (Nannochloropsis gaditana)
ATGCTCAGGTTGGGAATGACATTACTCAACTCCGTAAGTTCGTCGACAGC
AACATCGCACAATTTGCGCTGTTAGGCATACAACTTTTGTGGACAATGGA
TTGTCAAACAGCGTTAGAGACTTGCAAGACAAAGAAGCATATTATGAAAG
AGACTAATCAGAAACAACTGGCCGTCCTTCAAGAAATGTCTTCGTGGTGC
CTTCAAGATCTAGGGTCGAAAGCCAATCGGCGCAAAATCGAAACCTTGGT
TACTATTTATGTCCATCAGAGGGATGTTATGGCAGATCTGACAGCTTTAT
ACAGGGCCAAAAAGATAAAGGATGCCAACGACTTTGAATGGCTTAAACAA
GCTCGCTTCTATTGGCGGCCCAATTCACATGATGAATGTGATGCAGACGG
GGCCTGTGTCGTCAGTATCACAGACGTGGACTTTAACTACCAATACGAGT
ATTTAGGAGCAAAGGAACGACTTGTGGTCACTCCTCTTACAGACAGGTGC
TACATTACACTAGCCCAAGCTTTGGGAATGTATTTCGGGGGTGCACCTGC
CGGACCGGCGGGAACGGGCAAGACCGAGACTGTCAAAGATTTGGGCCGTA
CTTTGGGTCTCTTCGTGGTTGTGACAAATTGTACCGACCAGCAAAAGTAC
ACAGATTGCGCAAAGATATTTAAAGGCCTATGCCAGGGTGGTTTGTGGGG
CTGCTTCGATGAATTCAATCGCATTCTGTTGCCTGTTTTATCAGTTGTTG
CCCAGCAAGTCCTTGCAATCCAAAACGCCAAGAAAGCCGGAGTAGAATAT
TTTCAGTTTCCCGGCGATTCTCAAAATGTGCTTCTTAAACCCTGCTGTGG
GTTTTTCATCACGATGAACCCCGGATACGCAGGTCGCCAAGAATTACCTG
AAAACTTGAAGGCTCTCTTTAGGGGGGTAGCCATGATGACGCCAGACTTT
CAAATAATTAAGAAGGTCAAACTCTGCTCGGTGGGCTACACAGATTTTGA
TCTCTTGGCGCAGAAGTTCTTTGTCCTTTACAGTACGTGTAGGGAGCAAC
TTTCTGCCCAAAAGCACTACGACTGGGGCTTACGCAACATCTTGGCGGTA
CTGCGTACGGCAGGGCAGACTAAAAGGGATAACGTCGATAAGTCTGAGTC
TTATCTCATGTATAGGACGTTGCGAGACATGA
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Coding sequence (CDS) from alignment at CM002471.1:215760..216941-

>rna7280 ID=rna7280|Name=rna7280|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002471.1:215760..216941- (Nannochloropsis gaditana)
GACGTTGCGAGACATGATATCACAGACGTGGACTTTAACTACCAATACGA
GTATTTAGGAGCAAAGGAACGACTTGTGGTCACTCCTCTTACAGACAGGT
GCTACATTACACTAGCCCAAGCTTTGGGAATGTATTTCGGGGGTGCACCT
GCCGGACCGGCGGGAACGGGCAAGACCGAGACTGTCAAAGATTTGGGCCG
TACTTTGGGTCTCTTCGTGGTTGTGACAAATTGTACCGACCAGCAAAAGT
ACACAGATTGCGCAAAGATATTTAAAGGCCTATGCCAGGGTGGTTTGTGG
GGCTGCTTCGATGAATTCAATCGCATTCTGTTGCCTGTTTTATCAGTTGT
TGCCCAGCAAGTCCTTGCAATCCAAAACGCCAAGAAAGCCGGAGTAGAAT
ATTTTCAGTTTCCCGGCGATTCTCAAAATGTGCTTCTTAAACCCTGCTGT
GGGTTTTTCATCACGATGAACCCCGGATACGCAGATGCTCAGGACGTTGC
GAGACATGATATCACAGACGTGGACTTTAACTACCAATACGAGTATTTAG
GAGCAAAGGAACGACTTGTGGTCACTCCTCTTACAGACAGGTGCTACATT
ACACTAGCCCAAGCTTTGGGAATGTATTTCGGGGGTGCACCTGCCGGACC
GGCGGGAACGGGCAAGACCGAGACTGTCAAAGATTTGGGCCGTACTTTGG
GTCTCTTCGTGGTTGTGACAAATTGTACCGACCAGCAAAAGTACACAGAT
TGCGCAAAGATATTTAAAGGCCTATGCCAGGGTGGTTTGTGGGGCTGCTT
CGATGAATTCAATCGCATTCTGTTGCCTGTTTTATCAGTTGTTGCCCAGC
AAGTCCTTGCAATCCAAAACGCCAAGAAAGCCGGAGTAGAATATTTTCAG
TTTCCCGGCGATTCTCAAAATGTGCTTCTTAAACCCTGCTGTGGGTTTTT
CATCACGATGAACCCCGGATACGCAGATGCTCAGGACGTTGCGAGACATG
ATATCACAGACGTGGACTTTAACTACCAATACGAGTATTTAGGAGCAAAG
GAACGACTTGTGGTCACTCCTCTTACAGACAGGTGCTACATTACACTAGC
CCAAGCTTTGGGAATGTATTTCGGGGGTGCACCTGCCGGACCGGCGGGAA
CGGGCAAGACCGAGACTGTCAAAGATTTGGGCCGTACTTTGGGTCTCTTC
GTGGTTGTGACAAATTGTACCGACCAGCAAAAGTACACAGATTGCGCAAA
GATATTTAAAGGCCTATGCCAGGGTGGTTTGTGGGGCTGCTTCGATGAAT
TCAATCGCATTCTGTTGCCTGTTTTATCAGTTGTTGCCCAGCAAGTCCTT
GCAATCCAAAACGCCAAGAAAGCCGGAGTAGAATATTTTCAGTTTCCCGG
CGATTCTCAAAATGTGCTTCTTAAACCCTGCTGTGGGTTTTTCATCACGA
TGAACCCCGGATACGCAGATGCTCAG
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Synonyms
Publications