rna7275, rna7275 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7275
Unique Name	rna7275
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2835
Alignment location	CM002471.1:195613..196758 +

Link to JBrowse

Properties


Property Name	Value
Product	endoribonuclease l-psp
Orig transcript id	gnl\|cribi\|Naga_100077g4.5199.mrna
Orig protein id	gnl\|cribi\|Naga_100077g4.5199
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:195613..196758 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100077g4	gene7040	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7275	rna7275-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23409.1	cds7258	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:195613..196758+
coding sequence from alignment at CM002471.1:195613..196758+

mRNA sequence

>rna7275 ID=rna7275|Name=rna7275|organism=Nannochloropsis gaditana|type=mRNA|length=2835bp
ACAGTGATAGACATGCTCAATACTTAAGTTCCTCAACAGGGGGCAGCCAG
AAGGTGGCATCCACATTTGTTTTTGCTTTGCGGCTTGCAATTGCTTAGGA
GGCATACTTAGGGTCGCCATAAGAGGGATTGCTCCACTCCTTCTTCTGGT
ATAATTAGAAGGCAAGATGAGCATCGCCGTGCTGGACGATGGGGAAGCCC
TGGCACAAAGTATACATACCATCAGTACATCTCTGGAGGAACATCATAAA
TCTACTCTCGAGTCCCTGTCCATTCTCGACAAAATCGACCATCGCCTCAG
CAGCTTGGAATCCAATATGGCGCCCATCCGTCTTGTCACGGAACAGCTCA
CTCGTGCAGAACACCACGTGACCCAATCCTACGCGGCCCTGCGGCGAATT
CACAAGAATTTCCGGGTATGCGCCGACGCCGACGTCGTCCTCCGCAAAGG
CCTAGGAGCCCCTATCCCCGCTCTTTCCCAGGCTTCGGCTCCTACCATCA
CCGAGGAGGACCGGTGCGCCCTAAACGCGTACATGCAGATTCTTGATCGG
GTGCATGCTGCCCTCACCTTCCTTAGGGTCCGCCCCAGAATCAGGTCGGG
GGAGGCCGCCATTCGGCACCTGGACGTCCGTCGAAGCAAATTACTCGCGG
AAATGAAGGAAGAAATCGTACGGCTGATTGTCCAGGGCTCTTGTTGCACG
GTCCAAGGTCCCTCAGGCCGCCTGAGTCCATGGGGGGAGAGTCCCCTTTA
CCAACACACCGAGCCCATTGCCTTAAATATCTCCCGCCGCATTCGGGATA
TCTGCGAGTCCATGGCACGTGCTGGGGACATGCGATGGGCCGATGCCTAC
GCCAGAGCGCGCGGAAGCAAAGTTGAGGAGGCCGTCACCGTTTTTTTGCA
CGGGCAGCAACAGTCTTTCGGGGGCGGGGGAGGAAGCGGAGGAGGAAAGG
GAGGAGAGACTCGCCTGTCTGTGAGCGTCTTGGGTGGTGCTAGCAGCAGC
AACGGAGGGTTCGGCGGGGCATCGATTTCCCCGCCTAGGTTTGTGAGTGG
CGGCGGCAGAGGGGATGGAGAAGTGGGGGATCGTACCGCTCTGCTCTCTA
CTCTGGGACGCGACGTCGCCGAAACATGGCTCAGCTACCTGCATTTTTTG
CGCGAAATCATCAAGGGGGAAGAAATTATGTTCCTGCGCACCTTGCCCAT
GAATTTTGCGCAATCGATCCGGGCCTGGGAGGATATGATGGGCCAAGTCT
TAATCCGGGTATGCAAGGAAGCGACGGAGGCCTTGGACGTCATGTTGGGG
CGGGAAAAGACGGCGGGAGAGAAAGCCCTGTTGCTCCTGGCTGTGTTGAC
AGGCATGGAACACCAAATGCCCGCATTCGAGCAGGCCTTTGCCAATGTGA
CCAAACATGCCTCCTCCCCCGGATCCCCTGTCCCTACCAGCCTACGGGAA
ATCCCTGCCAGCACCACAGTCAAGCCCCACCACCGTGCCCGCCCTTCCTC
CACCTCCCTCTCGCTTCGTCCTCTTTCCAAGGCTTTTGCCGCAGTGTCCC
ATCCCAAGGGGAACATCCTCCCTGCCTCCCCCCTTGACTCCTCCCCACCC
CTTGCCCACGTTCACCTTCTCTACCGACACGTCTGTCGCCTGACGATCAC
TCACCTTCAAACATTCTTGGACGATGTGCTGAACGACTCCATTTCCTCCC
ACAACTTGCCACGAAATGCCTCCGTACACGTGGTTACCAGCAACACACTG
AGGACCTTTAAGCGCATCATTGCCTACCACGAAATCTTCGAGCATCTTCC
CCTCCTCGGGGGCCTGGCCCTCCTCCCGTGGGAAAGCGAGGAGGATCGAG
CCGCCCTCACCAGAGGGAAGGAAGAGGCAGAGGAACAAAGCACGGGGGAG
GAACAGCAGGAAACGCATTTGCGGATCTATGCTCATCAGTTGTTTATGAA
CCTGTTGAAGAACATCCAGGGGAAGACCGAGGCGTATCATAAAATGGACG
GCGGCGTCGACAAATATAGCGCGGCGGGACAACCCCTCGTGTTTCTAATG
AACAACGCTCACTACATGGTCTCCACCATCGAAGCATCCTCTTCCCTGGA
AGAAGCTCCACTCGTGCGGACTGCCCCGACGTTCTCTTGGTGCCCTTCTG
GCACCGTGTCGCTGACAAGCGTGGTCTCAGAAGCCTTCATGGACAGGCTC
CGGACGGTCACAAACGACTCTCGAACCAAATTCACCGCCTCGGTCTGGGC
AGACTTGGCGGAAGTCACAACGAACGACAAGTCATTGCCGGACGTAGAAA
ACACTTCAGGAGGACACCAGCTCACTTTCGAGGGGGGGAGGCTGGTGAAA
GCCAGATTTTCGGCATTCAACACGGCCATGGATGAGATCTACAATACGCA
GAAGTCCTTTTTGATTCTGGATGCAGGCTTACGAATGCAGTTGCGGGAGG
AGGCGAAGGCAGCCTTCCTGCCTCCGTACACGACCTTCTACGATAAATTT
TCCGGAACACAATTTAGTAAGAAGCATATGGACCAATATCTCCGGTTTTC
TCCTGCGACAGTCAAAAGTATGATAGATGAATTGTACGCTGGTTGATATT
TGCCATTTAGAGAATCAGAGGTCTCGGCTTCAATTGTCCTCCTCCATATG
CTCCCCATTTCGTACGCTAATATGGTGGAATAGGCTCCCAGTCCTTTCGT
CTGGTTAGCGGGTTACTTCTCTAGGAGGAAAAGGGAATGAAGTGCTTGAA
AGCAAAATCAACAGGAAATTTGTATAGTGGTGTATGAGCCCTGCATGTCG
ATAAAGAAAATAATCTCACAGTTTTCATCGCATAT

protein sequence of rna7275

>rna7275-protein ID=rna7275-protein|Name=rna7275|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLM
TGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNC
VDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVV
EVED

mRNA from alignment at CM002471.1:195613..196758+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7275 ID=rna7275|Name=rna7275|organism=Nannochloropsis gaditana|type=mRNA|length=1146bp|location=Sequence derived from alignment at CM002471.1:195613..196758+ (Nannochloropsis gaditana)
CGCAAGACCCGAAAAATGGTTGTAATCATCGATCCACTCCTTTTCACCGC
ATCCAGCCTAAACAACCGCTCCCCATGACATTAGTTCATAGCTTTTATAC
GAATCTCGACCATTGGGTCGTCCCTGTGCATGTTATCGTTCCTCAACACA
GCAGGATAAACTTCGGCGACACTTGGCACGTATTTCACTCGAAAAGGCAA
ACCTCTTCTCGCCGTACAGAATGGTCCAAATCGAAGCCAGGCTAGCACAG
CTAGGAATTGATTTGCCGGACGTTATCGCGCCGAAAGGTGAGTGGTGGTA
TGTTCTTAATCATTTCATAAAATACCTACGTCTCCCACCATCTCCGTCCA
CATCGGTCTTTGATGCCCAGGAAACTACGCCCTTGCAGTGAGGACTGGAA
ACTTATTGTTTTTGGGTGAGTGTAGCGTGTACAAGAAATGATGGTGACAC
AAAGATTGGGTGATAAAGCGGCTTGGCATATTATGTTTGTTGGtgacgaa
ggggggggacataATACTAAAGCACGACATCGAAGGATCATTTTCTTGAC
ACACTTTCTTGCTTTCCATTTCACAGCCGGGCACATCCCGCTTCTTAAAA
ACGGCGTGCTGATGACTGGAAAGGTGGGTGCCGACaagagcctggaggaa
ggacaagaagcagCGCAGGTTATTGCAATTAACCTCCTGGCCACCCTGAA
GTCGGAATTGGGGGACTTGGACAAGGTAGGTGAGGACGCCCTTTtctgct
ccttctttccACTATAGCCTCATCCGATTTCTTTGACGTCTGTGTTTGTT
TTGAttggctcctctccctcaggtCAAGCGCATTGTCAAGCTGGTAGGCT
TCGTCAATTGTGTCGATGGTTTCAGTCAACAACCTATGGTCGTGAACGGT
GCCAGCGACTTTTTTGTCCAAGTCTTCGGCGACAAAGGCGTGCATGCCCG
GAGTGCCGTCGGCACcaacgccctccccttgaaCATTCCTGTGGAGATCG
AGGCAGTCGTGGAGGTAGAAGACTAGGAGAGGGCAGAAGCAacgagggcg
aaggaaacGAAAGGGCATGTCGCGGGTCAAGGAAGTGGATTTGGCCTCTT
TGAGGCCGAAAAATGTGAAAGAAACTAAACATACAGGGTAGCACCA

Coding sequence (CDS) from alignment at CM002471.1:195613..196758+

>rna7275 ID=rna7275|Name=rna7275|organism=Nannochloropsis gaditana|type=CDS|length=1860bp|location=Sequence derived from alignment at CM002471.1:195613..196758+ (Nannochloropsis gaditana)
ATGGTCCAAATCGAAGCCAGGCTAGCACAGCTAGGAATTGATTTGCCGGA
CGTTATCGCGCCGAAAGGAAACTACGCCCTTGCAGTGAGGACTGGAAACT
TATTGTTTTTGGCCGGGCACATCCCGCTTCTTAAAAACGGCGTGCTGATG
ACTGGAAAGGTGGGTGCCGACaagagcctggaggaaggacaagaagcagC
GCAGGTTATTGCAATTAACCTCCTGGCCACCCTGAAGTCGGAATTGGGGG
ACTTGGACAAGgtCAAGCGCATTGTCAAGCTGGTAGGCTTCGTCAATTGT
GTCGATGGTTTCAGTCAACAACCTATGGTCGTGAACGGTGCCAGCGACTT
TTTTGTCCAAGTCTTCGGCGACAAAGGCGTGCATGCCCGGAGTGCCGTCG
GCACcaacgccctccccttgaaCATTCCTGTGGAGATCGAGGCAGTCGTG
GAGGTAGAAGACTAGATGGTCCAAATCGAAGCCAGGCTAGCACAGCTAGG
AATTGATTTGCCGGACGTTATCGCGCCGAAAGGAAACTACGCCCTTGCAG
TGAGGACTGGAAACTTATTGTTTTTGGCCGGGCACATCCCGCTTCTTAAA
AACGGCGTGCTGATGACTGGAAAGGTGGGTGCCGACaagagcctggagga
aggacaagaagcagCGCAGGTTATTGCAATTAACCTCCTGGCCACCCTGA
AGTCGGAATTGGGGGACTTGGACAAGgtCAAGCGCATTGTCAAGCTGGTA
GGCTTCGTCAATTGTGTCGATGGTTTCAGTCAACAACCTATGGTCGTGAA
CGGTGCCAGCGACTTTTTTGTCCAAGTCTTCGGCGACAAAGGCGTGCATG
CCCGGAGTGCCGTCGGCACcaacgccctccccttgaaCATTCCTGTGGAG
ATCGAGGCAGTCGTGGAGGTAGAAGACTAGATGGTCCAAATCGAAGCCAG
GCTAGCACAGCTAGGAATTGATTTGCCGGACGTTATCGCGCCGAAAGGAA
ACTACGCCCTTGCAGTGAGGACTGGAAACTTATTGTTTTTGGCCGGGCAC
ATCCCGCTTCTTAAAAACGGCGTGCTGATGACTGGAAAGGTGGGTGCCGA
CaagagcctggaggaaggacaagaagcagCGCAGGTTATTGCAATTAACC
TCCTGGCCACCCTGAAGTCGGAATTGGGGGACTTGGACAAGgtCAAGCGC
ATTGTCAAGCTGGTAGGCTTCGTCAATTGTGTCGATGGTTTCAGTCAACA
ACCTATGGTCGTGAACGGTGCCAGCGACTTTTTTGTCCAAGTCTTCGGCG
ACAAAGGCGTGCATGCCCGGAGTGCCGTCGGCACcaacgccctccccttg
aaCATTCCTGTGGAGATCGAGGCAGTCGTGGAGGTAGAAGACTAGATGGT
CCAAATCGAAGCCAGGCTAGCACAGCTAGGAATTGATTTGCCGGACGTTA
TCGCGCCGAAAGGAAACTACGCCCTTGCAGTGAGGACTGGAAACTTATTG
TTTTTGGCCGGGCACATCCCGCTTCTTAAAAACGGCGTGCTGATGACTGG
AAAGGTGGGTGCCGACaagagcctggaggaaggacaagaagcagCGCAGG
TTATTGCAATTAACCTCCTGGCCACCCTGAAGTCGGAATTGGGGGACTTG
GACAAGgtCAAGCGCATTGTCAAGCTGGTAGGCTTCGTCAATTGTGTCGA
TGGTTTCAGTCAACAACCTATGGTCGTGAACGGTGCCAGCGACTTTTTTG
TCCAAGTCTTCGGCGACAAAGGCGTGCATGCCCGGAGTGCCGTCGGCACc
aacgccctccccttgaaCATTCCTGTGGAGATCGAGGCAGTCGTGGAGGT
AGAAGACTAG

Synonyms

Publications