EWM23409.1, cds7258 (CDS) Nannochloropsis gaditana

Overview
NameEWM23409.1
Unique Namecds7258
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:195833..195899 +
Alignment locationCM002471.1:195983..196027 +
Alignment locationCM002471.1:196189..196337 +
Alignment locationCM002471.1:196435..196638 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23409.1
Productendoribonuclease l-psp
Orig transcript idgnl|cribi|Naga_100077g4.5199.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:195833..195899 +
CM002471.1supercontigCM002471.1:195983..196027 +
CM002471.1supercontigCM002471.1:196189..196337 +
CM002471.1supercontigCM002471.1:196435..196638 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006175YjgF/YER057c/UK114
IPR013813Endoribo_LPSP/chorism_mut-like
Homology
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|585104425|gb|EWM23409.1| (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 305.449 bits (781), Expect = 5.123e-105
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED
Sbjct:    1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|553188095|ref|XP_005854737.1| (endoribonuclease l-psp [Nannochloropsis gaditana CCMP526] >gi|422294326|gb|EKU21626.1| endoribonuclease l-psp [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 235.728 bits (600), Expect = 6.878e-77
Identity = 111/153 (72.55%), Postives = 135/153 (88.24%), Query Frame = 0
Query:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            +  EA+L ++G+ LP    PKGN+A+AV++G +++L+GH+P   NG L+TGKVGA+ S EE Q AA++IA+NLL++LK E+GDLD+VKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEA+VEVED
Sbjct:   32 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|585104474|gb|EWM23442.1| (endoribonuclease l-psp [Nannochloropsis gaditana])

HSP 1 Score: 236.113 bits (601), Expect = 1.913e-76
Identity = 111/153 (72.55%), Postives = 135/153 (88.24%), Query Frame = 0
Query:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            +  EA+L ++G+ LP    PKGN+A+AV++G +++L+GH+P   NG L+TGKVGA+ S EE Q AA++IA+NLL++LK E+GDLD+VKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEA+VEVED
Sbjct:   83 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|568024052|gb|ETL98094.1| (hypothetical protein L917_04769 [Phytophthora parasitica])

HSP 1 Score: 210.305 bits (534), Expect = 3.738e-67
Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0
Query:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            V IE ++ +LG  LP V  PKGNY  +VR+GN +++AGH+P    G L+ GKVG D + E+G EAA  +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct:   20 VHIERKIEELGYSLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|675187047|ref|XP_008902408.1| (hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|566028793|gb|ETI51704.1| hypothetical protein F443_05052 [Phytophthora parasitica P1569] >gi|567966071|gb|ETK91529.1| hypothetical protein L915_04923 [Phytophthora parasitica] >gi|567994790|gb|ETL44940.1| hypothetical protein L916_04870 [Phytophthora parasitica] >gi|568054480|gb|ETM51260.1| hypothetical protein L914_04873 [Phytophthora parasitica] >gi|568097696|gb|ETN12438.1| hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|570956494|gb|ETP21488.1| hypothetical protein F441_05058 [Phytophthora parasitica CJ01A1] >gi|970663543|gb|KUG00690.1| hypothetical protein AM587_10006148 [Phytophthora nicotianae])

HSP 1 Score: 210.305 bits (534), Expect = 4.704e-67
Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0
Query:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            V IE ++ +LG  LP V  PKGNY  +VR+GN +++AGH+P    G L+ GKVG D + E+G EAA  +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct:   20 VHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|570332508|gb|ETO80456.1| (hypothetical protein F444_05101 [Phytophthora parasitica P1976])

HSP 1 Score: 209.92 bits (533), Expect = 6.392e-67
Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0
Query:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            V IE ++ +LG  LP V  PKGNY  +VR+GN +++AGH+P    G L+ GKVG D + E+G EAA  +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct:   20 VHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHFVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|570991647|gb|ETP49338.1| (hypothetical protein F442_05119 [Phytophthora parasitica P10297])

HSP 1 Score: 207.223 bits (526), Expect = 8.193e-66
Identity = 96/153 (62.75%), Postives = 123/153 (80.39%), Query Frame = 0
Query:    2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            V IE ++ +LG  LP V   KGNY  +VR+GN +++AGH+P    G L+ GKVG D + E+G EAA  +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD   +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct:   20 VHIERKIEELGYTLPAVAEHKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|673021132|ref|XP_008864527.1| (hypothetical protein H310_02708 [Aphanomyces invadans] >gi|574479458|gb|ETW06452.1| hypothetical protein H310_02708 [Aphanomyces invadans])

HSP 1 Score: 206.838 bits (525), Expect = 9.454e-66
Identity = 98/154 (63.64%), Postives = 120/154 (77.92%), Query Frame = 0
Query:    1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
             V  EAR+ +LG  LP V  PKGNY  +VR GNL+F AGH+P    G L+ GKVG D + EEG EAA  +A+ L+ATLK ELGDLD+VKRIVK+VGFVNCVDGF+ QP V+NG SD  V++FGD+G+HARSAVGTNALPL IPVE+E +VE++D
Sbjct:   15 FVHTEARIKELGYTLPAVATPKGNYRNSVRMGNLIFTAGHLPQPAGGELIKGKVGVDLTPEEGYEAAHHVALALVATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGTSDTLVKIFGDRGIHARSAVGTNALPLGIPVEVEIIVEIQD 168          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|673029192|ref|XP_008868557.1| (hypothetical protein H310_05590 [Aphanomyces invadans] >gi|574476174|gb|ETW03173.1| hypothetical protein H310_05590 [Aphanomyces invadans])

HSP 1 Score: 206.068 bits (523), Expect = 1.244e-65
Identity = 101/154 (65.58%), Postives = 119/154 (77.27%), Query Frame = 0
Query:    1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            M    ARLA+LG  LP V  PKGNY L  R GNL++ AGHIP   NG L+TGKVG D + E+  EAA V+A+ LLATL++ELGDL+K+K+IVKL GFVN VDGF+ QP V+NGASD F +VFGD GV ARSAVGTN LPLN+PVEIEA+VEV D
Sbjct:    8 MPDYRARLAELGYVLPPVSPPKGNYKLLTRVGNLIYTAGHIPTPANGALITGKVGVDLTTEQAYEAAHVVALALLATLQNELGDLNKIKQIVKLTGFVNAVDGFAAQPTVINGASDTFAKVFGDHGVGARSAVGTNGLPLNVPVEIEAIVEVHD 161          
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|698805394|ref|XP_009835726.1| (hypothetical protein H257_10772 [Aphanomyces astaci] >gi|574109135|gb|ETV74639.1| hypothetical protein H257_10772 [Aphanomyces astaci])

HSP 1 Score: 205.297 bits (521), Expect = 1.995e-65
Identity = 100/154 (64.94%), Postives = 118/154 (76.62%), Query Frame = 0
Query:    1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
            M    ARLA+LG  LP V  PKGNY L  R GNL++ AGHIP   NG L+TGKVG D + E+  +AA V+A+ LLATL+ ELGDL+K+K+IVKL GFVN VDGF+ QP V+NGASD F +VFGD GV ARSAVGTN LPLN+PVEIEA+VEV D
Sbjct:    1 MTDYTARLAELGYVLPAVSPPKGNYKLLTRVGNLIYTAGHIPTPANGALITGKVGVDLTTEQAYDAAHVVALALLATLQHELGDLNKIKQIVKLTGFVNAVDGFAAQPTVINGASDTFAKVFGDHGVGARSAVGTNGLPLNVPVEIEAIVEVHD 154          
The following BLAST results are available for this feature:
BLAST of EWM23409.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104425|gb|EWM23409.1|5.123e-105100.00endoribonuclease l-psp [Nannochloropsis gaditana][more]
gi|553188095|ref|XP_005854737.1|6.878e-7772.55endoribonuclease l-psp [Nannochloropsis gaditana C... [more]
gi|585104474|gb|EWM23442.1|1.913e-7672.55endoribonuclease l-psp [Nannochloropsis gaditana][more]
gi|568024052|gb|ETL98094.1|3.738e-6763.40hypothetical protein L917_04769 [Phytophthora para... [more]
gi|675187047|ref|XP_008902408.1|4.704e-6763.40hypothetical protein PPTG_09268 [Phytophthora para... [more]
gi|570332508|gb|ETO80456.1|6.392e-6763.40hypothetical protein F444_05101 [Phytophthora para... [more]
gi|570991647|gb|ETP49338.1|8.193e-6662.75hypothetical protein F442_05119 [Phytophthora para... [more]
gi|673021132|ref|XP_008864527.1|9.454e-6663.64hypothetical protein H310_02708 [Aphanomyces invad... [more]
gi|673029192|ref|XP_008868557.1|1.244e-6565.58hypothetical protein H310_05590 [Aphanomyces invad... [more]
gi|698805394|ref|XP_009835726.1|1.995e-6564.94hypothetical protein H257_10772 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7275rna7275Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications