EWM23409.1, cds7258 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|585104425|gb|EWM23409.1| (endoribonuclease l-psp [Nannochloropsis gaditana]) HSP 1 Score: 305.449 bits (781), Expect = 5.123e-105 Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query: 1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED
Sbjct: 1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|553188095|ref|XP_005854737.1| (endoribonuclease l-psp [Nannochloropsis gaditana CCMP526] >gi|422294326|gb|EKU21626.1| endoribonuclease l-psp [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 235.728 bits (600), Expect = 6.878e-77 Identity = 111/153 (72.55%), Postives = 135/153 (88.24%), Query Frame = 0
Query: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
+ EA+L ++G+ LP PKGN+A+AV++G +++L+GH+P NG L+TGKVGA+ S EE Q AA++IA+NLL++LK E+GDLD+VKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEA+VEVED
Sbjct: 32 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 184
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|585104474|gb|EWM23442.1| (endoribonuclease l-psp [Nannochloropsis gaditana]) HSP 1 Score: 236.113 bits (601), Expect = 1.913e-76 Identity = 111/153 (72.55%), Postives = 135/153 (88.24%), Query Frame = 0
Query: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
+ EA+L ++G+ LP PKGN+A+AV++G +++L+GH+P NG L+TGKVGA+ S EE Q AA++IA+NLL++LK E+GDLD+VKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEA+VEVED
Sbjct: 83 IHTEAKLTEMGLKLPPPGVPKGNFAMAVKSGKMIYLSGHLPTDANGQLLTGKVGAEVSPEEAQGAAKLIALNLLSSLKKEVGDLDRVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAIVEVED 235
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|568024052|gb|ETL98094.1| (hypothetical protein L917_04769 [Phytophthora parasitica]) HSP 1 Score: 210.305 bits (534), Expect = 3.738e-67 Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
V IE ++ +LG LP V PKGNY +VR+GN +++AGH+P G L+ GKVG D + E+G EAA +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct: 20 VHIERKIEELGYSLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|675187047|ref|XP_008902408.1| (hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|566028793|gb|ETI51704.1| hypothetical protein F443_05052 [Phytophthora parasitica P1569] >gi|567966071|gb|ETK91529.1| hypothetical protein L915_04923 [Phytophthora parasitica] >gi|567994790|gb|ETL44940.1| hypothetical protein L916_04870 [Phytophthora parasitica] >gi|568054480|gb|ETM51260.1| hypothetical protein L914_04873 [Phytophthora parasitica] >gi|568097696|gb|ETN12438.1| hypothetical protein PPTG_09268 [Phytophthora parasitica INRA-310] >gi|570956494|gb|ETP21488.1| hypothetical protein F441_05058 [Phytophthora parasitica CJ01A1] >gi|970663543|gb|KUG00690.1| hypothetical protein AM587_10006148 [Phytophthora nicotianae]) HSP 1 Score: 210.305 bits (534), Expect = 4.704e-67 Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
V IE ++ +LG LP V PKGNY +VR+GN +++AGH+P G L+ GKVG D + E+G EAA +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct: 20 VHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|570332508|gb|ETO80456.1| (hypothetical protein F444_05101 [Phytophthora parasitica P1976]) HSP 1 Score: 209.92 bits (533), Expect = 6.392e-67 Identity = 97/153 (63.40%), Postives = 124/153 (81.05%), Query Frame = 0
Query: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
V IE ++ +LG LP V PKGNY +VR+GN +++AGH+P G L+ GKVG D + E+G EAA +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct: 20 VHIERKIEELGYTLPAVAEPKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHFVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|570991647|gb|ETP49338.1| (hypothetical protein F442_05119 [Phytophthora parasitica P10297]) HSP 1 Score: 207.223 bits (526), Expect = 8.193e-66 Identity = 96/153 (62.75%), Postives = 123/153 (80.39%), Query Frame = 0
Query: 2 VQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
V IE ++ +LG LP V KGNY +VR+GN +++AGH+P G L+ GKVG D + E+G EAA +A++L+ATLK E+GDLDK+KR+VKLVGFVNCVDGF+QQP V+NGASD +VFGDKG+HARSAVGTNALPLN+ VE+EA+VE+ED
Sbjct: 20 VHIERKIEELGYTLPAVAEHKGNYRTSVRSGNTIYMAGHLPQPAGGDLILGKVGKDLTPEQGYEAAHYVALSLMATLKQEVGDLDKIKRVVKLVGFVNCVDGFTQQPAVINGASDTIGKVFGDKGIHARSAVGTNALPLNVAVEVEAIVEIED 172
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|673021132|ref|XP_008864527.1| (hypothetical protein H310_02708 [Aphanomyces invadans] >gi|574479458|gb|ETW06452.1| hypothetical protein H310_02708 [Aphanomyces invadans]) HSP 1 Score: 206.838 bits (525), Expect = 9.454e-66 Identity = 98/154 (63.64%), Postives = 120/154 (77.92%), Query Frame = 0
Query: 1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
V EAR+ +LG LP V PKGNY +VR GNL+F AGH+P G L+ GKVG D + EEG EAA +A+ L+ATLK ELGDLD+VKRIVK+VGFVNCVDGF+ QP V+NG SD V++FGD+G+HARSAVGTNALPL IPVE+E +VE++D
Sbjct: 15 FVHTEARIKELGYTLPAVATPKGNYRNSVRMGNLIFTAGHLPQPAGGELIKGKVGVDLTPEEGYEAAHHVALALVATLKQELGDLDRVKRIVKVVGFVNCVDGFTAQPSVINGTSDTLVKIFGDRGIHARSAVGTNALPLGIPVEVEIIVEIQD 168
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|673029192|ref|XP_008868557.1| (hypothetical protein H310_05590 [Aphanomyces invadans] >gi|574476174|gb|ETW03173.1| hypothetical protein H310_05590 [Aphanomyces invadans]) HSP 1 Score: 206.068 bits (523), Expect = 1.244e-65 Identity = 101/154 (65.58%), Postives = 119/154 (77.27%), Query Frame = 0
Query: 1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
M ARLA+LG LP V PKGNY L R GNL++ AGHIP NG L+TGKVG D + E+ EAA V+A+ LLATL++ELGDL+K+K+IVKL GFVN VDGF+ QP V+NGASD F +VFGD GV ARSAVGTN LPLN+PVEIEA+VEV D
Sbjct: 8 MPDYRARLAELGYVLPPVSPPKGNYKLLTRVGNLIYTAGHIPTPANGALITGKVGVDLTTEQAYEAAHVVALALLATLQNELGDLNKIKQIVKLTGFVNAVDGFAAQPTVINGASDTFAKVFGDHGVGARSAVGTNGLPLNVPVEIEAIVEVHD 161
BLAST of EWM23409.1 vs. NCBI_GenBank
Match: gi|698805394|ref|XP_009835726.1| (hypothetical protein H257_10772 [Aphanomyces astaci] >gi|574109135|gb|ETV74639.1| hypothetical protein H257_10772 [Aphanomyces astaci]) HSP 1 Score: 205.297 bits (521), Expect = 1.995e-65 Identity = 100/154 (64.94%), Postives = 118/154 (76.62%), Query Frame = 0
Query: 1 MVQIEARLAQLGIDLPDVIAPKGNYALAVRTGNLLFLAGHIPLLKNGVLMTGKVGADKSLEEGQEAAQVIAINLLATLKSELGDLDKVKRIVKLVGFVNCVDGFSQQPMVVNGASDFFVQVFGDKGVHARSAVGTNALPLNIPVEIEAVVEVED 154
M ARLA+LG LP V PKGNY L R GNL++ AGHIP NG L+TGKVG D + E+ +AA V+A+ LLATL+ ELGDL+K+K+IVKL GFVN VDGF+ QP V+NGASD F +VFGD GV ARSAVGTN LPLN+PVEIEA+VEV D
Sbjct: 1 MTDYTARLAELGYVLPAVSPPKGNYKLLTRVGNLIYTAGHIPTPANGALITGKVGVDLTTEQAYDAAHVVALALLATLQHELGDLNKIKQIVKLTGFVNAVDGFAAQPTVINGASDTFAKVFGDHGVGARSAVGTNGLPLNVPVEIEAIVEVHD 154 The following BLAST results are available for this feature:
BLAST of EWM23409.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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