rna7273, rna7273 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7273
Unique Name	rna7273
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1068
Alignment location	CM002471.1:189821..191806 -

Link to JBrowse

Properties


Property Name	Value
Product	dna topoisomerase i
Orig transcript id	gnl\|cribi\|Naga_100077g2.5196.mrna
Orig protein id	gnl\|cribi\|Naga_100077g2.5196
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:189821..191806 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100077g2	gene7038	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7273	rna7273-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23406.1	cds7256	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:189821..191806-
coding sequence from alignment at CM002471.1:189821..191806-

mRNA sequence

>rna7273 ID=rna7273|Name=rna7273|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp
CGTTTTTGGTCTGTCCCCGGTGTACGTCTGAGCTGACTAGCGTGTAGGAG
AAAGGGAGAGTCCTATCGCCCGCTCATCATCGCCTCCCTCCCTTGCTCTT
CCCCGCTTCCCCCCGTCCTCCCCCCCGTCCTCCCCCCCGTCCTCCCCCCC
TCCCTTCCCCAGGCCTTGGCCGTGGCCCGCGTCCAAGCCCGAGAACAGTT
TGGCGACACGGACACCGAGCCTGTCGTGGCGTCGGAAAAAGCCGGGAAGG
GAAAGAAAAACCTGGCGAGTGCCACGGCCCAGGAGGCGCACGAAGCAGTA
CGGCCCTCCATCCTGGTGGAGAGCAACCGGTTTCGGACGCCGAAAGAGAT
GGGGTCGGGTTGGATTGCGGACAAGAAAAAATTGGATTTGTACACCTTGA
TCTACGAGCGAACGCTGGCCTCGGTGATGAAAGACGCGAAAATGGAGAGG
AAAACGGTGGCGGTGGAGGCGCGGTCCCCAAGAGGAGGGGAGAGGGGGAC
CAACCACCTTGCGGAGCTGGTGGTGACCGGGCAGACGATCCTGACCCGTG
GCTTCCTTCGCGCCCTCCGAGAGGAAGAACAGGCCCCGACTGCCTCCCTT
TCCCCCACCGGCCCTGGTTCCGACCCCGACGGCCCCCCTCCCTCCCTCTC
TCCCTCCTTCCTGGACCGCCTGACCCCCGGGCAGGCCCTGTCCTGCCTGG
GGACCAAGGTCCTGCTCCACGCCACCAGCCCCCCCTACCGATACACGCAG
GGCTCCTTCGTGCGGACGGTGGAGGAGCTGGGCATCGGTCGGCCTTCCAC
CTATGCCACGATCATCGAGGTCTTGAAGACCCGCAGATATTTTGCCATGA
AAGGCACGGCCATGGTGCCCACCTTGGTGGGGTTCGTGGTGGCGCAGCTG
TTGGAAGGGCATTTTCCTGCCTTTGTGGACGCGGGCTTCACGAGTCAAAT
GGAAGGGCAGTTGGATTTGATTGCCAAGGGGAATGCGGACCGGGTGTCTT
ACCTGGACGAATACTACAGGGGCCTGACGTCGGCCATCGAGACGGTGGAA
GGAGCCATTGACAGGTGA

protein sequence of rna7273

>rna7273-protein ID=rna7273-protein|Name=rna7273|organism=Nannochloropsis gaditana|type=polypeptide|length=388bp
MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLV
PVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTST
TSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTN
LIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAK
KEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDR
EGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQ
HARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQ
SAAYAGLRATLVVGGREEGGRDRRPVADTGWTAAGHQQ

mRNA from alignment at CM002471.1:189821..191806-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7273 ID=rna7273|Name=rna7273|organism=Nannochloropsis gaditana|type=mRNA|length=1986bp|location=Sequence derived from alignment at CM002471.1:189821..191806- (Nannochloropsis gaditana)
TTTACGACTCTATACGCACAGATATACGCCACTTCGGGAAATTGATGCCG
GCATTTTAACAAAGTAATTGAGGAGGATTGAAAGGGCCATCCGCCTATTG
AAGCGAGCTCTTCAAGTAGCAGAAGTGACTTCCTTCATCGTCTTGCCCAC
ACAACCACAGATCCTTGTACACGAGCACCTTCACTTCATGTTACCAACCA
GTCAGGGATCGAATCAAGCGGGAGATATTTAGATGGACGGTCCATTGCCC
GGCCGCATGACCTGCAGAAGGAAACGGTCGACTGCTTGGGCCCCCCTGCC
CTTGCTCCTTGCCCCTCTATTTTCCACAGTGGCCCGCTCCCAAGCTTTGT
TTACATCGACTGCCTTCGTCAGACCTCTGGTACCTGTGTCTCCATCCATG
TTTCGTATCTTATTGCGGCGGCAGCACGACGTGACGACGCACATTTTCCC
CTCCCTTCATCATCAACGACATCGCCTCCTCCCTCCAGCCTCGGTGGTCA
GACTCGCCACAGCCCAGTCCACCACCTCCACGACCAGCACGCGTCGAAAA
TCCACAACATCATCCAAGGCAGGGAGCAAAGCCAAAACTTCGGCCGGAGC
AAGCAAGAAAAAAGTAAACGGGGGCAAATCCCGCTCGGCGGAAGGCACTG
GGGACGAGCCGGGGCTCTCATCGGGCACAAACCTGATCATCGTGGAGTCC
GCGACCAAAGCCAACACCATCAAGCGCTTCCTCACGGGGGGGAAGGGTGG
AGACAAGTGGGAAGTGGATTTTTGCATGGGCCACGTCCGAGAGCTTCCAC
GCACTTTGGCCGATATGCCTCCCACGGCGAAGAAGGAGAAGAGTAAGGTA
CGCCCCCAGATGAATCCAGCTCCCACCGGCAGGAGTATGAGGTCTCCTGA
GTTCAAAATTTTATCCCCAAGGCTCAATTTAGTACCCCTGGTACCCCTTT
GGTTGGCGCATGCGTTCCAACGCCTGTCGTCCGGGAAACCTCTGTTGCAG
GACCTGATCTCTTCTTCCCTCCCAACTTCTCTCCCTATATTCCTCATTTT
TCCTCCCTCCCACCTTCCATTCCTCCCTCCCTCCCTTCCCTCCCTCTCAC
CCACTCACCCATCCTTCGCGCAGGTCCTGGGTGTCAAGATCGATCAGGAC
TACGAACCCGTCTGGATCGTCCTGCCCGGGCGCGAGTCCGTGGTCAGCCG
ACTCAAAGAGAAAGCCAAGACGTGCTCGGCCCTGTACCTGGCCACCGACG
AAGACCGAGAAGGGGAAGCGATCTCCTGGCACCTGCTTGACCTCCTCCAG
CCCCGCGTCCCGGTCCACCGGGTCATCTTCCACGAGATCACGCCCACCGC
GGTCGGGGCGGGTCTGGCCTCCCCCCGGCCCCTGGACATTGCTTTGGTGG
AGGCACAGCATGCCCGTCGGGTCTTGGACCGGGTGGCGGGCTACACGATG
AGCCCCTTGCTCTGGAAAAAAATTGCGCGGGGTCTGAGCGCGGGGAGGGT
GCAGAGTGCTGGGTTGAAGCTTTTGGTGGACCGGGAGCGGGAGCGGATGA
CGTTCCAATCCGCGGCCTACGCGGGTCTGCGCGCCACCTTGGTCGTGGGT
GGGAGGGAGGAAGGAGGGAGGGATAGACGCCCGGTTGCAGACACTGGATG
GACAGCGGCTGGCCACCAGCAATGATTTTGACCCCAAGACGGGCCGCTTG
TGGGAAGCGAAGGCGGGGAGCGTCCGGTGGCTCGACGATGCGGGAATGGC
CCGCGTGGCCGCCGCATTGGCCGATCCAGGCACAGTCTGGAGGGTCAAGG
ACGTGGAGACACGGGTGGTGACCCGCCGGCGCCCGGCCCCCTTCACCACC
AGCACCCTCCAGCAGGAGGCGAACAGTCGGCTCGGCCTCACGTCGTCGCA
GACCATGAAGCTCGCCCAGGAGCTTTATGAGGAAGGCCACATCTCTTACA
TGCGCACAGACAGCCCCAACATGGGGCCAGAGGTAG

Coding sequence (CDS) from alignment at CM002471.1:189821..191806-

>rna7273 ID=rna7273|Name=rna7273|organism=Nannochloropsis gaditana|type=CDS|length=2334bp|location=Sequence derived from alignment at CM002471.1:189821..191806- (Nannochloropsis gaditana)
GTCCTGGGTGTCAAGATCGATCAGGACTACGAACCCGTCTGGATCGTCCT
GCCCGGGCGCGAGTCCGTGGTCAGCCGACTCAAAGAGAAAGCCAAGACGT
GCTCGGCCCTGTACCTGGCCACCGACGAAGACCGAGAAGGGGAAGCGATC
TCCTGGCACCTGCTTGACCTCCTCCAGCCCCGCGTCCCGGTCCACCGGGT
CATCTTCCACGAGATCACGCCCACCGCGGTCGGGGCGGGTCTGGCCTCCC
CCCGGCCCCTGGACATTGCTTTGGTGGAGGCACAGCATGCCCGTCGGGTC
TTGGACCGGGTGGCGGGCTACACGATGAGCCCCTTGCTCTGGAAAAAAAT
TGCGCGGGGTCTGAGCGCGGGGAGGGTGCAGAGTGCTGGGTTGAAGCTTT
TGGTGGACCGGGAGCGGGAGCGGATGACGTTCCAATCCGCGGCCTACGCG
GGTCTGCGCGCCACCTTGGTCGTGGGTGGGAGGGAGGAAGGAGGGAGGGA
TAGACGCCCGGTTGCAGACACTGGATGGACAGCGGCTGGCCACCAGCAAT
GAATGGACGGTCCATTGCCCGGCCGCATGACCTGCAGAAGGAAACGGTCG
ACTGCTTGGGCCCCCCTGCCCTTGCTCCTTGCCCCTCTATTTTCCACAGT
GGCCCGCTCCCAAGCTTTGTTTACATCGACTGCCTTCGTCAGACCTCTGG
TACCTGTGTCTCCATCCATGTTTCGTATCTTATTGCGGCGGCAGCACGAC
GTGACGACGCACATTTTCCCCTCCCTTCATCATCAACGACATCGCCTCCT
CCCTCCAGCCTCGGTGGTCAGACTCGCCACAGCCCAGTCCACCACCTCCA
CGACCAGCACGCGTCGAAAATCCACAACATCATCCAAGGCAGGGAGCAAA
GCCAAAACTTCGGCCGGAGCAAGCAAGAAAAAAGTAAACGGGGGCAAATC
CCGCTCGGCGGAAGGCACTGGGGACGAGCCGGGGCTCTCATCGGGCACAA
ACCTGATCATCGTGGAGTCCGCGACCAAAGCCAACACCATCAAGCGCTTC
CTCACGGGGGGGAAGGGTGGAGACAAGTGGGAAGTGGATTTTTGCATGGG
CCACGTCCGAGAGCTTCCACGCACTTTGGCCGATATGCCTCCCACGGCGA
AGAAGGAGAAGAGTAAGGTCCTGGGTGTCAAGATCGATCAGGACTACGAA
CCCGTCTGGATCGTCCTGCCCGGGCGCGAGTCCGTGGTCAGCCGACTCAA
AGAGAAAGCCAAGACGTGCTCGGCCCTGTACCTGGCCACCGACGAAGACC
GAGAAGGGGAAGCGATCTCCTGGCACCTGCTTGACCTCCTCCAGCCCCGC
GTCCCGGTCCACCGGGTCATCTTCCACGAGATCACGCCCACCGCGGTCGG
GGCGGGTCTGGCCTCCCCCCGGCCCCTGGACATTGCTTTGGTGGAGGCAC
AGCATGCCCGTCGGGTCTTGGACCGGGTGGCGGGCTACACGATGAGCCCC
TTGCTCTGGAAAAAAATTGCGCGGGGTCTGAGCGCGGGGAGGGTGCAGAG
TGCTGGGTTGAAGCTTTTGGTGGACCGGGAGCGGGAGCGGATGACGTTCC
AATCCGCGGCCTACGCGGGTCTGCGCGCCACCTTGGTCGTGGGTGGGAGG
GAGGAAGGAGGGAGGGATAGACGCCCGGTTGCAGACACTGGATGGACAGC
GGCTGGCCACCAGCAATGAATGGACGGTCCATTGCCCGGCCGCATGACCT
GCAGAAGGAAACGGTCGACTGCTTGGGCCCCCCTGCCCTTGCTCCTTGCC
CCTCTATTTTCCACAGTGGCCCGCTCCCAAGCTTTGTTTACATCGACTGC
CTTCGTCAGACCTCTGGTACCTGTGTCTCCATCCATGTTTCGTATCTTAT
TGCGGCGGCAGCACGACGTGACGACGCACATTTTCCCCTCCCTTCATCAT
CAACGACATCGCCTCCTCCCTCCAGCCTCGGTGGTCAGACTCGCCACAGC
CCAGTCCACCACCTCCACGACCAGCACGCGTCGAAAATCCACAACATCAT
CCAAGGCAGGGAGCAAAGCCAAAACTTCGGCCGGAGCAAGCAAGAAAAAA
GTAAACGGGGGCAAATCCCGCTCGGCGGAAGGCACTGGGGACGAGCCGGG
GCTCTCATCGGGCACAAACCTGATCATCGTGGAGTCCGCGACCAAAGCCA
ACACCATCAAGCGCTTCCTCACGGGGGGGAAGGGTGGAGACAAGTGGGAA
GTGGATTTTTGCATGGGCCACGTCCGAGAGCTTCCACGCACTTTGGCCGA
TATGCCTCCCACGGCGAAGAAGGAGAAGAGTAAG

Synonyms

Publications