EWM23406.1, cds7256 (CDS) Nannochloropsis gaditana

Overview
NameEWM23406.1
Unique Namecds7256
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:190960..191574 -
Alignment locationCM002471.1:190132..190683 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23406.1
Productdna topoisomerase i
Orig transcript idgnl|cribi|Naga_100077g2.5196.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:190960..191574 -
CM002471.1supercontigCM002471.1:190132..190683 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0016043cellular component organization
GO:0006265DNA topological change
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003916DNA topoisomerase activity
GO:0003677DNA binding
GO:0003917DNA topoisomerase type I activity
Vocabulary: INTERPRO
TermDefinition
IPR023405Topo_IA_core_domain
IPR013497Topo_IA_cen
IPR013824Topo_IA_cen_sub1
IPR003601Topo_IA_2
IPR006171Toprim_domain
IPR000380Topo_IA
Homology
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|585104422|gb|EWM23406.1| (dna topoisomerase i [Nannochloropsis gaditana])

HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0
Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
Query:    1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRPVADTGWTAAGHQQ 388
            MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRPVADTGWTAAGHQQ
Sbjct:    1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRPVADTGWTAAGHQQ 388          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|553190545|ref|XP_005855211.1| (dna topoisomerase i, partial [Nannochloropsis gaditana CCMP526] >gi|422293845|gb|EKU21145.1| dna topoisomerase i, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0
Identity = 287/288 (99.65%), Postives = 287/288 (99.65%), Query Frame = 0
Query:    1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLAS 288
            MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGA KKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLAS
Sbjct:    1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGARKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLAS 288          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|505282395|ref|WP_015469497.1| (DNA topoisomerase I [Bdellovibrio exovorus] >gi|469930034|gb|AGH95007.1| DNA topoisomerase I [Bdellovibrio exovorus JSS])

HSP 1 Score: 248.825 bits (634), Expect = 4.095e-71
Identity = 123/234 (52.56%), Postives = 163/234 (69.66%), Query Frame = 0
Query:  133 SRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGR 366
            +RS E +G      SGT L+IVES TKA TI+++L     G  + V+ CMGHVR+LP++  D+P   KKEK   LGV +D+++EP++ V   +  V+  LKEK      LYLATDEDREGE+ISWHLL++L+P VP  R++FHEIT  A+   L   R +D  LV AQ ARRVLDR+ GYT+SPLLWKK+A GLSAGRVQS  ++L+V+RE+ERM F+ ++Y GL A L   G+
Sbjct:    6 TRSRENSG------SGTKLVIVESPTKAKTIRKYL-----GKDFIVESCMGHVRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKLKVIKNLKEKLSEADELYLATDEDREGESISWHLLEVLKPSVPTKRMVFHEITKEAIQKSLNETREIDFNLVRAQEARRVLDRLVGYTISPLLWKKVAFGLSAGRVQSVAVRLVVEREKERMRFKKSSYYGLLAELEKAGQ 228          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|460166642|gb|EMI19966.1| (DNA topoisomerase I, partial [Rhodopirellula maiorica SM1])

HSP 1 Score: 232.261 bits (591), Expect = 4.428e-71
Identity = 113/222 (50.90%), Postives = 153/222 (68.92%), Query Frame = 0
Query:  146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGRE 367
            S+G +L+IVES  KA TI ++L  GKG   ++V+  +GH+R+LP    +MP   KKE    LGV  + D+EP++IV   ++  VS+LK   K    LYLATDEDREGEAISWHL ++L+P+VPVHR++FHEIT  A+   + +PR +D  LV+AQ  RR+LDR+ GY +S LLWKK+ RGLSAGRVQS  ++L+V RERER+ F  + Y  L AT     +E
Sbjct:    4 STGKSLVIVESPAKARTISKYL--GKG---YQVEASIGHIRDLPGGAKEMPEKYKKEPWAYLGVNTENDFEPIYIVPDDKKKQVSKLKAALKEADNLYLATDEDREGEAISWHLFEILKPKVPVHRLVFHEITKDAIQKAIENPRDIDGGLVDAQETRRILDRLYGYDVSQLLWKKVGRGLSAGRVQSVAVRLIVQRERERIAFVDSTYWDLEATFDTAAKE 220          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|1212742109|ref|WP_088616719.1| (DNA topoisomerase I [Bdellovibrio sp. SKB1291214] >gi|1211184732|gb|OWT46593.1| DNA topoisomerase I [Bdellovibrio sp. SKB1291214])

HSP 1 Score: 245.358 bits (625), Expect = 7.206e-70
Identity = 117/220 (53.18%), Postives = 157/220 (71.36%), Query Frame = 0
Query:  146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
            S G  L+IVES TKA TI++FL     G  + V+ CMGH+R+LP++  D+P   KKEK   LGV +D+++EP++ +   +  VV  LK+K    S LYLATDEDREGE+ISWHLL++L+P+VP  R++FHEIT  A+   L   R +D  LV AQ ARRVLDR+ GYT+SPLLWKK+A GLSAGRVQS  ++L+V+RE+ER+ F+ +AY G+ A L   G
Sbjct:    9 SDGIKLVIVESPTKAKTIRKFL-----GRDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCIPKDKTKVVKNLKDKLDEASELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKDAIQKALKDTREIDFNLVRAQEARRVLDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVEREQERIRFKKSAYWGVLAELSKDG 223          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|736945669|ref|WP_034942599.1| (DNA topoisomerase I [Geodermatophilaceae bacterium URHB0062])

HSP 1 Score: 245.358 bits (625), Expect = 1.271e-69
Identity = 132/268 (49.25%), Postives = 171/268 (63.81%), Query Frame = 0
Query:  108 TTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRP 375
            T +S+ GS++ T+A A   K    K  +A G         G  L+IVES TKAN I  +L     G  + V+  +GH+R+LPR  AD+P   K      LGV +D  +EP+++V P R   VSRLK+  K  S +YLATDEDREGEAI+WHL+D L+PRVPVHR++FHEITP A+   +ASPR LD ALV+AQ  RR+LDR+ GY +SP+LWKK+   LSAGRVQS   +++V+RERERM F +A Y  L  T  V GR  G     P
Sbjct:    3 TKTSQTGSES-TAATAGGTKAPARKRTAASG---------GKPLVIVESPTKANKIAGYL-----GSGYVVEASVGHIRDLPRNAADVPAEHKGAAWARLGVDVDNSFEPLYVVSPDRRQQVSRLKQLVKGASEVYLATDEDREGEAIAWHLVDTLKPRVPVHRMVFHEITPEAIARAVASPRELDTALVDAQETRRILDRLYGYEVSPVLWKKVLPKLSAGRVQSVATRIVVERERERMAFTAADYWSLEGTFAVPGRAAGADSGEP 255          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|1020060707|ref|WP_063208745.1| (DNA topoisomerase I [Bdellovibrio bacteriovorus] >gi|1005823182|gb|KYG62579.1| DNA topoisomerase I [Bdellovibrio bacteriovorus])

HSP 1 Score: 243.817 bits (621), Expect = 2.841e-69
Identity = 115/220 (52.27%), Postives = 158/220 (71.82%), Query Frame = 0
Query:  146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
            S G  L++VES TKA TI++FL     G  + V+ CMGH+R+LP++  D+P   KKEK   LGV +D+++EP++ V   +  VV  LK+K +  + LYLATDEDREGE+ISWHLL++L+P+VP  R++FHEIT  A+   L   R +D+ LV AQ ARR+LDR+ GYT+SPLLWKK+A GLSAGRVQS  ++L+V+RE ER+ F+ +AY G+ A L   G
Sbjct:    8 SDGIKLVVVESPTKAKTIRKFL-----GKDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKTKVVKNLKDKLEEATELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKDAIQKALKDTREIDLNLVRAQEARRILDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVERELERIRFKKSAYWGVLAELSKDG 222          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|1020108676|ref|WP_063243419.1| (DNA topoisomerase I [Bdellovibrio bacteriovorus] >gi|1005825049|gb|KYG64433.1| DNA topoisomerase I [Bdellovibrio bacteriovorus])

HSP 1 Score: 243.817 bits (621), Expect = 3.378e-69
Identity = 115/220 (52.27%), Postives = 158/220 (71.82%), Query Frame = 0
Query:  146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
            S G  L++VES TKA TI++FL     G  + V+ CMGH+R+LP++  D+P   KKEK   LGV +D+++EP++ V   +  VV  LK+K +  + LYLATDEDREGE+ISWHLL++L+P+VP  R++FHEIT  A+   L   R +D+ LV AQ ARR+LDR+ GYT+SPLLWKK+A GLSAGRVQS  ++L+V+RE ER+ F+ +AY G+ A L   G
Sbjct:    8 SDGIKLVVVESPTKAKTIRKFL-----GKDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKTKVVKNLKDKLEEATELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKDAIQKALKDTREIDLNLVRAQEARRILDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVERELERIRFKKSAYWGVLAELSKDG 222          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|725097769|gb|KHD87080.1| (DNA topoisomerase I [Bdellovibrio sp. ArHS])

HSP 1 Score: 243.432 bits (620), Expect = 3.694e-69
Identity = 115/220 (52.27%), Postives = 158/220 (71.82%), Query Frame = 0
Query:  146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
            S G  L++VES TKA TI++FL     G  + V+ CMGH+R+LP++  D+P   KKEK   LGV +D+++EP++ V   +  VV  LK+K +  S LYLATDEDREGE+ISWHLL++L+P+VP  R++FHEIT  A+   L   R +D+ LV AQ ARR+LDR+ GYT+SPLLWKK+A GLSAGRVQS  ++L+V+RE ER+ F+ ++Y G+ A L   G
Sbjct:    8 SDGIKLVVVESPTKAKTIRKFL-----GKDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKTKVVKNLKDKLEDASELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKEAIQKALKDTREIDLNLVRAQEARRILDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVERELERIRFKKSSYWGVLAELSKDG 222          
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|504187336|ref|WP_014374438.1| (DNA topoisomerase I [Blastococcus saxobsidens] >gi|378781871|emb|CCG01523.1| DNA topoisomerase 1 [Blastococcus saxobsidens DD2])

HSP 1 Score: 244.202 bits (622), Expect = 4.161e-69
Identity = 127/269 (47.21%), Postives = 169/269 (62.83%), Query Frame = 0
Query:  107 STTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRP 375
            + T+  A     T+ GA+KK    G +            S G  L+IVES TKAN I  +L     G  + V+  +GH+R+LPR  AD+P   K      LGV +D  +EP+++V P R+  V+RLK+  K  S +YLATDEDREGEAI+WHL+D L+PRVPV R++FHEITP A+   +A+PR LD ALV+AQ  RR+LDR+ GY +SP+LWKK+   LSAGRVQS   +++V+RERERM F +A Y  L  T  V GR  G  +  P
Sbjct:    3 TKTTQPAAESDPTTDGAAKKPARRGSA-----------ASGGRPLVIVESPTKANKIAGYL-----GSGYVVEASVGHIRDLPRNAADVPAEHKGAAWARLGVDVDNSFEPLYVVSPDRKQQVTRLKQLVKNASEIYLATDEDREGEAIAWHLIDTLKPRVPVRRMVFHEITPEAIARAVANPRELDTALVDAQETRRILDRLYGYEVSPVLWKKVLPKLSAGRVQSVATRIVVERERERMAFHAADYWSLEGTFAVPGRAAGADEGEP 255          
The following BLAST results are available for this feature:
BLAST of EWM23406.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104422|gb|EWM23406.1|0.000e+0100.00dna topoisomerase i [Nannochloropsis gaditana][more]
gi|553190545|ref|XP_005855211.1|0.000e+099.65dna topoisomerase i, partial [Nannochloropsis gadi... [more]
gi|505282395|ref|WP_015469497.1|4.095e-7152.56DNA topoisomerase I [Bdellovibrio exovorus] >gi|46... [more]
gi|460166642|gb|EMI19966.1|4.428e-7150.90DNA topoisomerase I, partial [Rhodopirellula maior... [more]
gi|1212742109|ref|WP_088616719.1|7.206e-7053.18DNA topoisomerase I [Bdellovibrio sp. SKB1291214] ... [more]
gi|736945669|ref|WP_034942599.1|1.271e-6949.25DNA topoisomerase I [Geodermatophilaceae bacterium... [more]
gi|1020060707|ref|WP_063208745.1|2.841e-6952.27DNA topoisomerase I [Bdellovibrio bacteriovorus] >... [more]
gi|1020108676|ref|WP_063243419.1|3.378e-6952.27DNA topoisomerase I [Bdellovibrio bacteriovorus] >... [more]
gi|725097769|gb|KHD87080.1|3.694e-6952.27DNA topoisomerase I [Bdellovibrio sp. ArHS][more]
gi|504187336|ref|WP_014374438.1|4.161e-6947.21DNA topoisomerase I [Blastococcus saxobsidens] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7273rna7273Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications