EWM23406.1, cds7256 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|585104422|gb|EWM23406.1| (dna topoisomerase i [Nannochloropsis gaditana]) HSP 1 Score: 784.252 bits (2024), Expect = 0.000e+0 Identity = 388/388 (100.00%), Postives = 388/388 (100.00%), Query Frame = 0
Query: 1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRPVADTGWTAAGHQQ 388
MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRPVADTGWTAAGHQQ
Sbjct: 1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRPVADTGWTAAGHQQ 388
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|553190545|ref|XP_005855211.1| (dna topoisomerase i, partial [Nannochloropsis gaditana CCMP526] >gi|422293845|gb|EKU21145.1| dna topoisomerase i, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 581.637 bits (1498), Expect = 0.000e+0 Identity = 287/288 (99.65%), Postives = 287/288 (99.65%), Query Frame = 0
Query: 1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLAS 288
MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGA KKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLAS
Sbjct: 1 MDGPLPGRMTCRRKRSTAWAPLPLLLAPLFSTVARSQALFTSTAFVRPLVPVSPSMFRILLRRQHDVTTHIFPSLHHQRHRLLPPASVVRLATAQSTTSTTSTRRKSTTSSKAGSKAKTSAGARKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLAS 288
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|505282395|ref|WP_015469497.1| (DNA topoisomerase I [Bdellovibrio exovorus] >gi|469930034|gb|AGH95007.1| DNA topoisomerase I [Bdellovibrio exovorus JSS]) HSP 1 Score: 248.825 bits (634), Expect = 4.095e-71 Identity = 123/234 (52.56%), Postives = 163/234 (69.66%), Query Frame = 0
Query: 133 SRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGR 366
+RS E +G SGT L+IVES TKA TI+++L G + V+ CMGHVR+LP++ D+P KKEK LGV +D+++EP++ V + V+ LKEK LYLATDEDREGE+ISWHLL++L+P VP R++FHEIT A+ L R +D LV AQ ARRVLDR+ GYT+SPLLWKK+A GLSAGRVQS ++L+V+RE+ERM F+ ++Y GL A L G+
Sbjct: 6 TRSRENSG------SGTKLVIVESPTKAKTIRKYL-----GKDFIVESCMGHVRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKLKVIKNLKEKLSEADELYLATDEDREGESISWHLLEVLKPSVPTKRMVFHEITKEAIQKSLNETREIDFNLVRAQEARRVLDRLVGYTISPLLWKKVAFGLSAGRVQSVAVRLVVEREKERMRFKKSSYYGLLAELEKAGQ 228
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|460166642|gb|EMI19966.1| (DNA topoisomerase I, partial [Rhodopirellula maiorica SM1]) HSP 1 Score: 232.261 bits (591), Expect = 4.428e-71 Identity = 113/222 (50.90%), Postives = 153/222 (68.92%), Query Frame = 0
Query: 146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGRE 367
S+G +L+IVES KA TI ++L GKG ++V+ +GH+R+LP +MP KKE LGV + D+EP++IV ++ VS+LK K LYLATDEDREGEAISWHL ++L+P+VPVHR++FHEIT A+ + +PR +D LV+AQ RR+LDR+ GY +S LLWKK+ RGLSAGRVQS ++L+V RERER+ F + Y L AT +E
Sbjct: 4 STGKSLVIVESPAKARTISKYL--GKG---YQVEASIGHIRDLPGGAKEMPEKYKKEPWAYLGVNTENDFEPIYIVPDDKKKQVSKLKAALKEADNLYLATDEDREGEAISWHLFEILKPKVPVHRLVFHEITKDAIQKAIENPRDIDGGLVDAQETRRILDRLYGYDVSQLLWKKVGRGLSAGRVQSVAVRLIVQRERERIAFVDSTYWDLEATFDTAAKE 220
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|1212742109|ref|WP_088616719.1| (DNA topoisomerase I [Bdellovibrio sp. SKB1291214] >gi|1211184732|gb|OWT46593.1| DNA topoisomerase I [Bdellovibrio sp. SKB1291214]) HSP 1 Score: 245.358 bits (625), Expect = 7.206e-70 Identity = 117/220 (53.18%), Postives = 157/220 (71.36%), Query Frame = 0
Query: 146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
S G L+IVES TKA TI++FL G + V+ CMGH+R+LP++ D+P KKEK LGV +D+++EP++ + + VV LK+K S LYLATDEDREGE+ISWHLL++L+P+VP R++FHEIT A+ L R +D LV AQ ARRVLDR+ GYT+SPLLWKK+A GLSAGRVQS ++L+V+RE+ER+ F+ +AY G+ A L G
Sbjct: 9 SDGIKLVIVESPTKAKTIRKFL-----GRDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCIPKDKTKVVKNLKDKLDEASELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKDAIQKALKDTREIDFNLVRAQEARRVLDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVEREQERIRFKKSAYWGVLAELSKDG 223
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|736945669|ref|WP_034942599.1| (DNA topoisomerase I [Geodermatophilaceae bacterium URHB0062]) HSP 1 Score: 245.358 bits (625), Expect = 1.271e-69 Identity = 132/268 (49.25%), Postives = 171/268 (63.81%), Query Frame = 0
Query: 108 TTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRP 375
T +S+ GS++ T+A A K K +A G G L+IVES TKAN I +L G + V+ +GH+R+LPR AD+P K LGV +D +EP+++V P R VSRLK+ K S +YLATDEDREGEAI+WHL+D L+PRVPVHR++FHEITP A+ +ASPR LD ALV+AQ RR+LDR+ GY +SP+LWKK+ LSAGRVQS +++V+RERERM F +A Y L T V GR G P
Sbjct: 3 TKTSQTGSES-TAATAGGTKAPARKRTAASG---------GKPLVIVESPTKANKIAGYL-----GSGYVVEASVGHIRDLPRNAADVPAEHKGAAWARLGVDVDNSFEPLYVVSPDRRQQVSRLKQLVKGASEVYLATDEDREGEAIAWHLVDTLKPRVPVHRMVFHEITPEAIARAVASPRELDTALVDAQETRRILDRLYGYEVSPVLWKKVLPKLSAGRVQSVATRIVVERERERMAFTAADYWSLEGTFAVPGRAAGADSGEP 255
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|1020060707|ref|WP_063208745.1| (DNA topoisomerase I [Bdellovibrio bacteriovorus] >gi|1005823182|gb|KYG62579.1| DNA topoisomerase I [Bdellovibrio bacteriovorus]) HSP 1 Score: 243.817 bits (621), Expect = 2.841e-69 Identity = 115/220 (52.27%), Postives = 158/220 (71.82%), Query Frame = 0
Query: 146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
S G L++VES TKA TI++FL G + V+ CMGH+R+LP++ D+P KKEK LGV +D+++EP++ V + VV LK+K + + LYLATDEDREGE+ISWHLL++L+P+VP R++FHEIT A+ L R +D+ LV AQ ARR+LDR+ GYT+SPLLWKK+A GLSAGRVQS ++L+V+RE ER+ F+ +AY G+ A L G
Sbjct: 8 SDGIKLVVVESPTKAKTIRKFL-----GKDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKTKVVKNLKDKLEEATELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKDAIQKALKDTREIDLNLVRAQEARRILDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVERELERIRFKKSAYWGVLAELSKDG 222
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|1020108676|ref|WP_063243419.1| (DNA topoisomerase I [Bdellovibrio bacteriovorus] >gi|1005825049|gb|KYG64433.1| DNA topoisomerase I [Bdellovibrio bacteriovorus]) HSP 1 Score: 243.817 bits (621), Expect = 3.378e-69 Identity = 115/220 (52.27%), Postives = 158/220 (71.82%), Query Frame = 0
Query: 146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
S G L++VES TKA TI++FL G + V+ CMGH+R+LP++ D+P KKEK LGV +D+++EP++ V + VV LK+K + + LYLATDEDREGE+ISWHLL++L+P+VP R++FHEIT A+ L R +D+ LV AQ ARR+LDR+ GYT+SPLLWKK+A GLSAGRVQS ++L+V+RE ER+ F+ +AY G+ A L G
Sbjct: 8 SDGIKLVVVESPTKAKTIRKFL-----GKDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKTKVVKNLKDKLEEATELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKDAIQKALKDTREIDLNLVRAQEARRILDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVERELERIRFKKSAYWGVLAELSKDG 222
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|725097769|gb|KHD87080.1| (DNA topoisomerase I [Bdellovibrio sp. ArHS]) HSP 1 Score: 243.432 bits (620), Expect = 3.694e-69 Identity = 115/220 (52.27%), Postives = 158/220 (71.82%), Query Frame = 0
Query: 146 SSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGG 365
S G L++VES TKA TI++FL G + V+ CMGH+R+LP++ D+P KKEK LGV +D+++EP++ V + VV LK+K + S LYLATDEDREGE+ISWHLL++L+P+VP R++FHEIT A+ L R +D+ LV AQ ARR+LDR+ GYT+SPLLWKK+A GLSAGRVQS ++L+V+RE ER+ F+ ++Y G+ A L G
Sbjct: 8 SDGIKLVVVESPTKAKTIRKFL-----GKDYVVESCMGHIRDLPQSAKDIPEKVKKEKWAQLGVNVDKNFEPLYCVPKDKTKVVKNLKDKLEDASELYLATDEDREGESISWHLLEVLKPKVPTKRMVFHEITKEAIQKALKDTREIDLNLVRAQEARRILDRLVGYTISPLLWKKVAYGLSAGRVQSVAVRLIVERELERIRFKKSSYWGVLAELSKDG 222
BLAST of EWM23406.1 vs. NCBI_GenBank
Match: gi|504187336|ref|WP_014374438.1| (DNA topoisomerase I [Blastococcus saxobsidens] >gi|378781871|emb|CCG01523.1| DNA topoisomerase 1 [Blastococcus saxobsidens DD2]) HSP 1 Score: 244.202 bits (622), Expect = 4.161e-69 Identity = 127/269 (47.21%), Postives = 169/269 (62.83%), Query Frame = 0
Query: 107 STTSSKAGSKAKTSAGASKKKVNGGKSRSAEGTGDEPGLSSGTNLIIVESATKANTIKRFLTGGKGGDKWEVDFCMGHVRELPRTLADMPPTAKKEKSKVLGVKIDQDYEPVWIVLPGRESVVSRLKEKAKTCSALYLATDEDREGEAISWHLLDLLQPRVPVHRVIFHEITPTAVGAGLASPRPLDIALVEAQHARRVLDRVAGYTMSPLLWKKIARGLSAGRVQSAGLKLLVDRERERMTFQSAAYAGLRATLVVGGREEGGRDRRP 375
+ T+ A T+ GA+KK G + S G L+IVES TKAN I +L G + V+ +GH+R+LPR AD+P K LGV +D +EP+++V P R+ V+RLK+ K S +YLATDEDREGEAI+WHL+D L+PRVPV R++FHEITP A+ +A+PR LD ALV+AQ RR+LDR+ GY +SP+LWKK+ LSAGRVQS +++V+RERERM F +A Y L T V GR G + P
Sbjct: 3 TKTTQPAAESDPTTDGAAKKPARRGSA-----------ASGGRPLVIVESPTKANKIAGYL-----GSGYVVEASVGHIRDLPRNAADVPAEHKGAAWARLGVDVDNSFEPLYVVSPDRKQQVTRLKQLVKNASEIYLATDEDREGEAIAWHLIDTLKPRVPVRRMVFHEITPEAIARAVANPRELDTALVDAQETRRILDRLYGYEVSPVLWKKVLPKLSAGRVQSVATRIVVERERERMAFHAADYWSLEGTFAVPGRAAGADEGEP 255 The following BLAST results are available for this feature:
BLAST of EWM23406.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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