rna7270, rna7270 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7270
Unique Name	rna7270
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	831
Alignment location	CM002471.1:184058..186294 -

Link to JBrowse

Properties


Property Name	Value
Product	dna topoisomerase
Orig transcript id	gnl\|cribi\|Naga_101378g1.2069.mrna
Orig protein id	gnl\|cribi\|Naga_101378g1.2069
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:184058..186294 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101378g1	gene7035	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7270	rna7270-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23421.1	cds7253	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:184058..186294-
coding sequence from alignment at CM002471.1:184058..186294-

mRNA sequence

>rna7270 ID=rna7270|Name=rna7270|organism=Nannochloropsis gaditana|type=mRNA|length=831bp
TCCCTCCCTCCCTCCCTCCCTCCCTCCGTCCAGCTCTTCCGTCGGTACAA
GCGGAAGGCCGCCTTCTTCGCGGGCAAGGCTCTGGTCAACTTGCAGGAAT
GGGCGGCAGCTTTGAGCCTCTTGGAGAGCGCGCGGGCCGTAGACATGCTC
CTGGACCCGGCGGGGAAGACGCTGGAAAGCCGAGAGGCCGCCTCGCTCCT
CGCCCGGGCCCGGCAAGGGAAAGTGAAGCAGGACAAGAAGGAGAAGGCGG
TATGGAGCAAGGCCTTCCAGTTGTCGTCAGAGGCGACGGCTGAAGAGGAC
CGAGAAGCACAGCCTTCCCCCCCCACGGCTGCTACCGGCGGTACCGGCCT
GCCTGCTTCCTCTCTCTTTTCCTCCCTGCCTGCGTCCTTAACAGGAGCGA
CCTCTGGGGCGGGAGCTTCCGGGGGGGGGAAAGCACGCGCCGTCGAGGGT
GGAAGAAGGAAAGGGAAGAAGGGAGGGAAGGAAGGAGGGAAGGAAGGAGG
GAAGGAGGGGTGGTGGAACGAAAAGACGGAGATGTATACGTTGATCACGC
TGGGAATGGCGGTCTTGGGCGGCTTTGCGTTCTTCTCATACCGAAATAAA
CACAAATAGAGGGAAAAGAAGTGGTAGAAGGGGGAGGGAGGGGGAGGATA
GAGGATGTTGGAAGGAGGAAGAGGGAATTTTCGGACGAGATTCCGCCCAA
AGGGCTTACAGGCACGGACGTCGGCCAGGGGAAGGAGGTTAGCTCGGTGA
TAGAGTAGGTGCTTGCTGACTATTGACTTGCACGCCCCCATCACAGAGGG
GAGGGAATAAAATGAACTCGTGACCCGTTGC

protein sequence of rna7270

>rna7270-protein ID=rna7270-protein|Name=rna7270|organism=Nannochloropsis gaditana|type=polypeptide|length=225bp
MHRQQGASMWFVPKGRYSYPHIRWNQIKLYLKEDMLGPGGSPPSYEAATA
LVDSKGGGSGPGGGGRGGGSEGGRARGSKVVKKEKITRSPSAFLLFTKEK
RPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSG
KKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEA
RRELGRRLEAMREEERERQAKEAVV

mRNA from alignment at CM002471.1:184058..186294-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7270 ID=rna7270|Name=rna7270|organism=Nannochloropsis gaditana|type=mRNA|length=2237bp|location=Sequence derived from alignment at CM002471.1:184058..186294- (Nannochloropsis gaditana)
CCTCCCTCTCCTTCTCCTTTCTTGTCGCTTCATTTCCTCTGTCTGGATTC
GGATTCCCCCGTGGGACTGGATTTGGAATGTTCAAGTCCATTTCTTCCCC
CCCACCTCCCGTGACCCGTCGTTCCCCGATGGCGGGGGAGGCCGGGGCTG
CATGCTTTCTTCCCGTATACAACCGCCCTCGGTCGTAGAAATGACTATTA
AATTCGATGACCTGCGGTCCTTTTTCAGCCTCCCCCCACCCTTCCCAGCT
GCTTTCACTCCTCGTTCTCCCTGTTGTGACCCACCTCCCCTCCCGAGCCA
CTAGTTCACCCCGCGCGCCTCCCATCCATGCACCGACAACAGGGAGCTTC
CATGTGGTTTGTCCCAAAAGGCCGCTACTCTTACCCCCACATTCGCTGGA
ATCAAATCAAGGTGGGAGACGGGGTCCTTTTCCTCCTGTGTCTTCTGTCC
TCACTCCTGCCTGTCACCCACCATTCATCCTCCTTTCCCCCCTGTCCTCC
CTATAGCTCTACTTGAAAGAAGACATGCTAGGTCCAGGAGGTTCTCCCCC
TTCCTACGAAGCCGCCACTGCCTTGGTCGATTCCAAAGGAGGGGGAAGCG
GGCCGGGTGGGGGCGGACGGGGCGGAGGAAGCGAGGGAGGGAGGGCCCGC
GGGAGCAAGGTAGTGAAGAAAGAAAAGATCACGCGCTCTCCCTCTGCTTT
TTTGCTCTTCACCAAGGAGAAACGGCCGGAGATGGAGAAAGGATTGACCT
TTGGGGAACAACAGAAGGTGCTCTCTGCAGCTTGGAAGGTAAGAGGTGGG
GGAAAGCGGGAGGAGGGAGGGAGGGAGGGAGGGAGCAAAGAGGAAAGGTC
AGATGGAGAACAAAAAAAGTGTGGCAGCGTGGATGCTGGTTGTTCGATTT
TCATTGGATGATGGTGTCACAGGCCTTGCCGGAAGATAGCCAAGAGCGGC
TGATTTATCTGGAGAAAGCGGAAAAATTACGAGGTAGGGTCCATGTCCTG
ATCATCTGCCTTCTAATCCTGTGCGCATGCTCTGTCCCACGACATGCGCA
GAGCCGAAAATACTGTATTCGATGATGCTAAGCGTTTAATTGGCAGGGAA
TAAGAACGTATATATATAATATACTGATAATAGTAGCCTTCCGTCTTGAG
GGCACGCTCGGCTTCCTCCATGGCCGTTCACCACTGCACTCAAGGCATCG
GGCATCCCACTACCTTCCCTCTTAACTTACCTTCCAATTTCCCACCTTCT
TCCCCTTCCCCCATCCCTATCACAAAGAAACAAGCAGTCCGTCTTCCGGG
AAAAAACGCGCCACTTCCGCCTCCTTGGTCCCCCGCAATGCCTACCAACT
CTTTTGCCACGAGGCGCGTCCGTCGCTGTCGAAGGGCATCAGCGTGGTGG
AACAAGCCAAAACCCTGTCCGCGAAATGGAAGGAGGTGGATGAGGAGGCG
AGGAGGGAGCTGGGGAGAAGGTTAGAGGCGATGAGGGAGGAGGAGAGGGA
GAGGCAGGCGAAGGAGGCCGTGGTCTGAGACGGGAGGGGGGAAGCAAAGC
AAAAATCACGCTGTCTCACTCTGTCGACAAGGAAACATCGAATGCCACTG
ACCGGATCCAAGAGGGAAAAAACGATGCCGGCAACGGGTCACGAGTTCAT
TTTATTCCCTCCCCTCTGTGATGGGGGCGTGCAAGTCAATAGTCAGCAAG
CACCTACTCTATCACCGAGCTAACCTCCTTCCCCTGGCCGACGTCCGTGC
CTGTAAGCCCTTTGGGCGGAATCTCGTCCGAAAATTCCCTCTTCCTCCTT
CCAACATCCTCTATCCTCCCCCTCCCTCCCCCTTCTACCACTTCTTTTCC
CTCTATTTGTGTTTATTTCGGTATGAGAAGAACGCAAAGCCGCCCAAGAC
CGCCATTCCCAGCGTGATCAACGTATACATCTCCGTCTTTTCGTTCCACC
ACCCCTCCTTCCCTCCTTCCTTCCCTCCTTCCTTCCCTCCCTTCTTCCCT
TTCCTTCTTCCACCCTCGACGGCGCGTGCTTTCCCCCCCCCGGAAGCTCC
CGCCCCAGAGGTCGCTCCTGTTAAGGACGCAGGCAGGGAGGAAAAGAGAG
AGGAAGCAGGCAGGCCGGTACCGCCGGTAGCAGCCGTGGGGGGGGAAGGC
TGTGCTTCTCGGTCCTCTTCAGCCGTCGCCTCTGACGACAACTGGAAGGC
CTGAGAGCATGGCGGCAAGGAACAAGGAGGGAAGGAA

Coding sequence (CDS) from alignment at CM002471.1:184058..186294-

>rna7270 ID=rna7270|Name=rna7270|organism=Nannochloropsis gaditana|type=CDS|length=2712bp|location=Sequence derived from alignment at CM002471.1:184058..186294- (Nannochloropsis gaditana)
AAACAAGCAGTCCGTCTTCCGGGAAAAAACGCGCCACTTCCGCCTCCTTG
GTCCCCCGCAATGCCTACCAACTCTTTTGCCACGAGGCGCGTCCGTCGCT
GTCGAAGGGCATCAGCGTGGTGGAACAAGCCAAAACCCTGTCCGCGAAAT
GGAAGGAGGTGGATGAGGAGGCGAGGAGGGAGCTGGGGAGAAGGTTAGAG
GCGATGAGGGAGGAGGAGAGGGAGAGGCAGGCGAAGGAGGCCGTGGTCTG
AGCCTTGCCGGAAGATAGCCAAGAGCGGCTGATTTATCTGGAGAAAGCGG
AAAAATTACGAGCTCTACTTGAAAGAAGACATGCTAGGTCCAGGAGGTTC
TCCCCCTTCCTACGAAGCCGCCACTGCCTTGGTCGATTCCAAAGGAGGGG
GAAGCGGGCCGGGTGGGGGCGGACGGGGCGGAGGAAGCGAGGGAGGGAGG
GCCCGCGGGAGCAAGGTAGTGAAGAAAGAAAAGATCACGCGCTCTCCCTC
TGCTTTTTTGCTCTTCACCAAGGAGAAACGGCCGGAGATGGAGAAAGGAT
TGACCTTTGGGGAACAACAGAAGGTGCTCTCTGCAGCTTGGAAGATGCAC
CGACAACAGGGAGCTTCCATGTGGTTTGTCCCAAAAGGCCGCTACTCTTA
CCCCCACATTCGCTGGAATCAAATCAAGAAACAAGCAGTCCGTCTTCCGG
GAAAAAACGCGCCACTTCCGCCTCCTTGGTCCCCCGCAATGCCTACCAAC
TCTTTTGCCACGAGGCGCGTCCGTCGCTGTCGAAGGGCATCAGCGTGGTG
GAACAAGCCAAAACCCTGTCCGCGAAATGGAAGGAGGTGGATGAGGAGGC
GAGGAGGGAGCTGGGGAGAAGGTTAGAGGCGATGAGGGAGGAGGAGAGGG
AGAGGCAGGCGAAGGAGGCCGTGGTCTGAGCCTTGCCGGAAGATAGCCAA
GAGCGGCTGATTTATCTGGAGAAAGCGGAAAAATTACGAGCTCTACTTGA
AAGAAGACATGCTAGGTCCAGGAGGTTCTCCCCCTTCCTACGAAGCCGCC
ACTGCCTTGGTCGATTCCAAAGGAGGGGGAAGCGGGCCGGGTGGGGGCGG
ACGGGGCGGAGGAAGCGAGGGAGGGAGGGCCCGCGGGAGCAAGGTAGTGA
AGAAAGAAAAGATCACGCGCTCTCCCTCTGCTTTTTTGCTCTTCACCAAG
GAGAAACGGCCGGAGATGGAGAAAGGATTGACCTTTGGGGAACAACAGAA
GGTGCTCTCTGCAGCTTGGAAGATGCACCGACAACAGGGAGCTTCCATGT
GGTTTGTCCCAAAAGGCCGCTACTCTTACCCCCACATTCGCTGGAATCAA
ATCAAGAAACAAGCAGTCCGTCTTCCGGGAAAAAACGCGCCACTTCCGCC
TCCTTGGTCCCCCGCAATGCCTACCAACTCTTTTGCCACGAGGCGCGTCC
GTCGCTGTCGAAGGGCATCAGCGTGGTGGAACAAGCCAAAACCCTGTCCG
CGAAATGGAAGGAGGTGGATGAGGAGGCGAGGAGGGAGCTGGGGAGAAGG
TTAGAGGCGATGAGGGAGGAGGAGAGGGAGAGGCAGGCGAAGGAGGCCGT
GGTCTGAGCCTTGCCGGAAGATAGCCAAGAGCGGCTGATTTATCTGGAGA
AAGCGGAAAAATTACGAGCTCTACTTGAAAGAAGACATGCTAGGTCCAGG
AGGTTCTCCCCCTTCCTACGAAGCCGCCACTGCCTTGGTCGATTCCAAAG
GAGGGGGAAGCGGGCCGGGTGGGGGCGGACGGGGCGGAGGAAGCGAGGGA
GGGAGGGCCCGCGGGAGCAAGGTAGTGAAGAAAGAAAAGATCACGCGCTC
TCCCTCTGCTTTTTTGCTCTTCACCAAGGAGAAACGGCCGGAGATGGAGA
AAGGATTGACCTTTGGGGAACAACAGAAGGTGCTCTCTGCAGCTTGGAAG
ATGCACCGACAACAGGGAGCTTCCATGTGGTTTGTCCCAAAAGGCCGCTA
CTCTTACCCCCACATTCGCTGGAATCAAATCAAGAAACAAGCAGTCCGTC
TTCCGGGAAAAAACGCGCCACTTCCGCCTCCTTGGTCCCCCGCAATGCCT
ACCAACTCTTTTGCCACGAGGCGCGTCCGTCGCTGTCGAAGGGCATCAGC
GTGGTGGAACAAGCCAAAACCCTGTCCGCGAAATGGAAGGAGGTGGATGA
GGAGGCGAGGAGGGAGCTGGGGAGAAGGTTAGAGGCGATGAGGGAGGAGG
AGAGGGAGAGGCAGGCGAAGGAGGCCGTGGTCTGAGCCTTGCCGGAAGAT
AGCCAAGAGCGGCTGATTTATCTGGAGAAAGCGGAAAAATTACGAGCTCT
ACTTGAAAGAAGACATGCTAGGTCCAGGAGGTTCTCCCCCTTCCTACGAA
GCCGCCACTGCCTTGGTCGATTCCAAAGGAGGGGGAAGCGGGCCGGGTGG
GGGCGGACGGGGCGGAGGAAGCGAGGGAGGGAGGGCCCGCGGGAGCAAGG
TAGTGAAGAAAGAAAAGATCACGCGCTCTCCCTCTGCTTTTTTGCTCTTC
ACCAAGGAGAAACGGCCGGAGATGGAGAAAGGATTGACCTTTGGGGAACA
ACAGAAGGTGCTCTCTGCAGCTTGGAAGATGCACCGACAACAGGGAGCTT
CCATGTGGTTTGTCCCAAAAGGCCGCTACTCTTACCCCCACATTCGCTGG
AATCAAATCAAG

Synonyms

Publications