EWM23421.1, cds7253 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|585104440|gb|EWM23421.1| (dna topoisomerase [Nannochloropsis gaditana]) HSP 1 Score: 451.055 bits (1159), Expect = 2.438e-160 Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0 Query: 1 MHRQQGASMWFVPKGRYSYPHIRWNQIKLYLKEDMLGPGGSPPSYEAATALVDSKGGGSGPGGGGRGGGSEGGRARGSKVVKKEKITRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEARRELGRRLEAMREEERERQAKEAVV 225 MHRQQGASMWFVPKGRYSYPHIRWNQIKLYLKEDMLGPGGSPPSYEAATALVDSKGGGSGPGGGGRGGGSEGGRARGSKVVKKEKITRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEARRELGRRLEAMREEERERQAKEAVV Sbjct: 1 MHRQQGASMWFVPKGRYSYPHIRWNQIKLYLKEDMLGPGGSPPSYEAATALVDSKGGGSGPGGGGRGGGSEGGRARGSKVVKKEKITRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEARRELGRRLEAMREEERERQAKEAVV 225
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|303278794|ref|XP_003058690.1| (DNA topoisomerase [Micromonas pusilla CCMP1545] >gi|226459850|gb|EEH57145.1| DNA topoisomerase [Micromonas pusilla CCMP1545]) HSP 1 Score: 79.337 bits (194), Expect = 1.575e-13 Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 0 Query: 87 TRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEAR 201 TR+PSAF L++ EKRP +E GL EQ K+L A WKAL +D + R + K + ++ KR S +AY LFC E R +L G+S Q K L AKWKE+D +R Sbjct: 1110 TRAPSAFFLYSAEKRPTLEPGLRAPEQAKILGAGWKALGDDERSRYEREARDAKAAMPADDAAAAKREKKKSTRTPSAYVLFCAEERANLPPGLSGPGQMKLLGAKWKEIDAVSR 1224
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|255078958|ref|XP_002503059.1| (DNA topoisomerase I [Micromonas commoda] >gi|226518325|gb|ACO64317.1| DNA topoisomerase I [Micromonas commoda]) HSP 1 Score: 75.485 bits (184), Expect = 3.561e-12 Identity = 54/138 (39.13%), Postives = 79/138 (57.25%), Query Frame = 0 Query: 78 SKVVKKEKIT--RSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLR--------ETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVD--EEARRE 203 +K VK EK+ R+PSA++L+ E R ++ +GL EQ K+L A WKAL D +ER+ + + A + + ET + G P +AY L+C+EAR L +G+ V EQAK L A+WK +D E+AR E Sbjct: 1080 AKKVKPEKVKAKRAPSAYILYCNEARSKLPEGLKVPEQAKLLGAQWKAL--DEKERVKFEKMATEAKAAIADAAPETKAKGKGANSEPKPKRAP-SAYILYCNEARSKLPEGLKVPEQAKLLGAQWKTLDAVEKARFE 1214
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|1198307076|gb|OUM63810.1| (hypothetical protein PIROE2DRAFT_36844, partial [Piromyces sp. E2]) HSP 1 Score: 67.0106 bits (162), Expect = 1.193e-10 Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 0 Query: 90 PSAFLLFTKEKRPEMEK---GLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKL-RETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSK---GISVVEQAKTLSAKWKEVDEEARR---ELGRRL 208 P+AF+++ + RP + K L+ E K++S WK+LPE +E+ +Y +++++L + PS K+ P NAY +F + RPS+ K +SV E +K +S KWK + EE R+ E RRL Sbjct: 4 PNAFIIYNRRVRPSVRKENPDLSVAEISKIISKKWKSLPE--EEKKVYYDESKRLPMQYMDPSISFKQ-------PPNAYIIFNRKVRPSVRKENPDLSVAEISKIISKKWKNLPEEERKLYYEESRRL 123 The following BLAST results are available for this feature:
BLAST of EWM23421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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