EWM23421.1, cds7253 (CDS) Nannochloropsis gaditana

Overview
NameEWM23421.1
Unique Namecds7253
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:185884..185967 -
Alignment locationCM002471.1:185507..185788 -
Alignment locationCM002471.1:185312..185372 -
Alignment locationCM002471.1:184767..185017 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23421.1
Productdna topoisomerase
Orig transcript idgnl|cribi|Naga_101378g1.2069.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:185884..185967 -
CM002471.1supercontigCM002471.1:185507..185788 -
CM002471.1supercontigCM002471.1:185312..185372 -
CM002471.1supercontigCM002471.1:184767..185017 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
Homology
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|585104440|gb|EWM23421.1| (dna topoisomerase [Nannochloropsis gaditana])

HSP 1 Score: 451.055 bits (1159), Expect = 2.438e-160
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0
Query:    1 MHRQQGASMWFVPKGRYSYPHIRWNQIKLYLKEDMLGPGGSPPSYEAATALVDSKGGGSGPGGGGRGGGSEGGRARGSKVVKKEKITRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEARRELGRRLEAMREEERERQAKEAVV 225
            MHRQQGASMWFVPKGRYSYPHIRWNQIKLYLKEDMLGPGGSPPSYEAATALVDSKGGGSGPGGGGRGGGSEGGRARGSKVVKKEKITRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEARRELGRRLEAMREEERERQAKEAVV
Sbjct:    1 MHRQQGASMWFVPKGRYSYPHIRWNQIKLYLKEDMLGPGGSPPSYEAATALVDSKGGGSGPGGGGRGGGSEGGRARGSKVVKKEKITRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEARRELGRRLEAMREEERERQAKEAVV 225          
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|303278794|ref|XP_003058690.1| (DNA topoisomerase [Micromonas pusilla CCMP1545] >gi|226459850|gb|EEH57145.1| DNA topoisomerase [Micromonas pusilla CCMP1545])

HSP 1 Score: 79.337 bits (194), Expect = 1.575e-13
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 0
Query:   87 TRSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLRETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVDEEAR 201
            TR+PSAF L++ EKRP +E GL   EQ K+L A WKAL +D + R     +  K    +  ++  KR    S    +AY LFC E R +L  G+S   Q K L AKWKE+D  +R
Sbjct: 1110 TRAPSAFFLYSAEKRPTLEPGLRAPEQAKILGAGWKALGDDERSRYEREARDAKAAMPADDAAAAKREKKKSTRTPSAYVLFCAEERANLPPGLSGPGQMKLLGAKWKEIDAVSR 1224          
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|255078958|ref|XP_002503059.1| (DNA topoisomerase I [Micromonas commoda] >gi|226518325|gb|ACO64317.1| DNA topoisomerase I [Micromonas commoda])

HSP 1 Score: 75.485 bits (184), Expect = 3.561e-12
Identity = 54/138 (39.13%), Postives = 79/138 (57.25%), Query Frame = 0
Query:   78 SKVVKKEKIT--RSPSAFLLFTKEKRPEMEKGLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKLR--------ETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSKGISVVEQAKTLSAKWKEVD--EEARRE 203
            +K VK EK+   R+PSA++L+  E R ++ +GL   EQ K+L A WKAL  D +ER+ + + A + +        ET +   G          P +AY L+C+EAR  L +G+ V EQAK L A+WK +D  E+AR E
Sbjct: 1080 AKKVKPEKVKAKRAPSAYILYCNEARSKLPEGLKVPEQAKLLGAQWKAL--DEKERVKFEKMATEAKAAIADAAPETKAKGKGANSEPKPKRAP-SAYILYCNEARSKLPEGLKVPEQAKLLGAQWKTLDAVEKARFE 1214          
BLAST of EWM23421.1 vs. NCBI_GenBank
Match: gi|1198307076|gb|OUM63810.1| (hypothetical protein PIROE2DRAFT_36844, partial [Piromyces sp. E2])

HSP 1 Score: 67.0106 bits (162), Expect = 1.193e-10
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 0
Query:   90 PSAFLLFTKEKRPEMEK---GLTFGEQQKVLSAAWKALPEDSQERLIYLEKAEKL-RETSSPSSGKKRATSASLVPRNAYQLFCHEARPSLSK---GISVVEQAKTLSAKWKEVDEEARR---ELGRRL 208
            P+AF+++ +  RP + K    L+  E  K++S  WK+LPE  +E+ +Y +++++L  +   PS   K+       P NAY +F  + RPS+ K    +SV E +K +S KWK + EE R+   E  RRL
Sbjct:    4 PNAFIIYNRRVRPSVRKENPDLSVAEISKIISKKWKSLPE--EEKKVYYDESKRLPMQYMDPSISFKQ-------PPNAYIIFNRKVRPSVRKENPDLSVAEISKIISKKWKNLPEEERKLYYEESRRL 123          
The following BLAST results are available for this feature:
BLAST of EWM23421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585104440|gb|EWM23421.1|2.438e-160100.00dna topoisomerase [Nannochloropsis gaditana][more]
gi|303278794|ref|XP_003058690.1|1.575e-1342.61DNA topoisomerase [Micromonas pusilla CCMP1545] >g... [more]
gi|255078958|ref|XP_002503059.1|3.561e-1239.13DNA topoisomerase I [Micromonas commoda] >gi|22651... [more]
gi|1198307076|gb|OUM63810.1|1.193e-1034.88hypothetical protein PIROE2DRAFT_36844, partial [P... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7270rna7270Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications