rna7267, rna7267 (mRNA) Nannochloropsis gaditana

Overview
Namerna7267
Unique Namerna7267
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length426
Alignment locationCM002471.1:180687..182281 -

Link to JBrowse

Properties
Property NameValue
ProductAlpha-tubulin N-acetyltransferase
Orig transcript idgnl|cribi|Naga_100843g2.3628.mrna
Orig protein idgnl|cribi|Naga_100843g2.3628
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:180687..182281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100843g2gene7032Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7267rna7267-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23424.1cds7250Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7267 ID=rna7267|Name=rna7267|organism=Nannochloropsis gaditana|type=mRNA|length=426bp
ATGGGCAATCAAGTGTCTGCGAAGATCCCGTCCTCGAAGAGATCCCTGGA
TGGAGACACCTCTTCCGGCACCCACGTTCACAGACACCAACAACCCAAGG
GGGAGCAGCATGCCAACCCGTCCGACGTGGAAAGCGAGGACAACATCCTC
CATTTCGCACAATCCTTCCCCGCGCGCCTCGTCGATGCTGCTACCGTAGA
TGCCGCCCTCCTTCCCTCCCCGACTCAAACCTCTTCGCCTGGACAGCCCT
CCTCCGCAGTGTCCTTCATGCCCCCGATGTCTCCACGCGCTTCTGTGCCC
CCCCGCGGCAAATTTTTCGGCCGGGCGGTGACTGCGAATCAAGCGGCCAT
CCGGGAGGGCAATAACACGGAAAACTATGGGATGCCGAAGCCCAGGCGTT
GCTGGCGACGACCTTTGCCAATGTGA
back to top

protein sequence of rna7267

>rna7267-protein ID=rna7267-protein|Name=rna7267|organism=Nannochloropsis gaditana|type=polypeptide|length=311bp
METTKDRGCDHVAQDGRTSYTALRFDKAALACLPPSACAAIDSLAACSAR
AQGLRRPISTIRSLQASDDHILYILASTASNVADTPPPSASFLSSPPFVP
SPPCSQPAEAVTPSTSPPYIFILPSSASFIAFDLPHAPSSPSLSSPLSPS
SSLPCTASTPSPAASFPSSPSSSFLALGLLKLGQKHLYLTNPQGQLVETN
PFCLLDFFIASPWQRKGLGASLLRLALSHEGISGPHCLAFDRPSPRLLPF
LAKHFALKKHRAQHNHFLVYDDFFSPFPSLPSCSVTSSSPPCPPWCSSGG
PLPFVNNHSLE
back to top

mRNA from alignment at CM002471.1:180687..182281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7267 ID=rna7267|Name=rna7267|organism=Nannochloropsis gaditana|type=mRNA|length=1595bp|location=Sequence derived from alignment at CM002471.1:180687..182281- (Nannochloropsis gaditana)
TTTTCCCACCGCACACATCCACGCCAGGCCTATCGTAGATGAACTCCATG
GCTACGTTAGTTTCTTTCTAAGGACCGTCCTGGCTTCCTTTACAAAGAAA
ACCTGAAAAAGGCTGGGTGCCCTGCTCCTCGCCCTGTGCCGTGAGGGAAA
GGTTCGATGACGAAAGGGGGGAGGCAAATTTTCATGTTTTTGCCGCGTAA
AACCACGTCTAATAACCCCCACATAATCCCATCCTGGACCACAACAGGCC
CACGACCGACAGTCCTCACGCTGGGACGGCATGGAAACGACTAAGGACAG
AGGATGCGATCATGTGGCACAGGATGGTCGAACCTCTTACACTGCCCTTC
GTTTTGACAAAGCCGCCTTAGGTCCGGCCGCAACTATACCCCCCCACCCC
CTCGTGCTTCATCCCACCACTTCCCTCCCGCTTATCCATCTCGTTCGTTC
ACGCACTTCCTCACATGCACGACAGCGTGTCTTCCTCCTTCGGCGTGTGC
AGCCATCGACAGCCTGGCTGCCTGCTCTGCCCGTGCCCAGGGACTGCGGA
GGCCCATCTCCACTATCCGCTCCCTTCAGGCATCAGATGATCACATTCTT
TACATACTTGCCTCTACCGCGAGCAACGTCGCCGACACGCCTCCTCCCTC
TGCTTCTTTCTTGTCTTCCCCTCCTTTTGTACCCTCCCCGCCCTGCTCCC
AGCCCGCCGAGGCCGTGACACCCTCCACGTCCCCGCCGTACATCTTCATC
CTACCGTCTTCTGCCTCCTTCATTGCCTTTGACCTGCCGCACGCTCCTTC
ATCCCCTTCCTTGAGCAGTCCATTATCGCCATCCTCATCACTTCCATGCA
CGGCGTCGACACCCTCCCCCGCTGCCTCTTTCCCTTCCTCCCCCTCCTCC
TCTTTCCTCGCCCTGGGCCTTCTCAAGCTAGGCCAAAAACACCTGTACCT
GACAAATCCTCAAGGACAGGTAAGGACGTGCGAAAGCAAGAGGACAGACC
ACCCTGCAATGTCAGCGCCGCATATTGACATGGTTTCTTCTGCCGACCTT
CCCTCCCCTCCTTATTCCCTCCCCCCTTCCCTTCGTCTCTCCCTCCAGCT
CGTCGAAACCAATCCCTTTTGCCTCCTCGACTTCTTCATCGCCTCCCCCT
GGCAACGGAAGGGTCTGGGCGCCTCCTTGTTGCGCCTGGCGCTGTCTCAC
GAAGGGATTTCTGGGCCCCACTGTCTGGCCTTCGACCGACCCTCCCCTCG
ACTCCTCCCCTTCCTAGCCAAGCACTTTGCCTTGAAGAAACACCGGGCCC
AGCACAACCATTTCCTTGTCTACGACGACTTTTTCTCCCCCTTCCCTTCT
CTCCCTTCCTGCTCCGTCACCTCCTCCTCCCCTCCCTGCCCGCCCTGGTG
CTCCTCTGGGGGGCCGTTGCCCTTTGTGAATAATCACTCTCTCGAATGAA
GGTACGCACAGAGGACTCGTAGAATAGGACGGGGAGGAGGAAAGCGAACA
AAATACGCACAGGAAGAAGGAGGTATTGCGAACGAAGATGGCGAGGCCGG
AAGTTTGAAAGAAATAAAAGGAAATTAAATTCCCCCCGGCCCAAG
back to top

Coding sequence (CDS) from alignment at CM002471.1:180687..182281-

>rna7267 ID=rna7267|Name=rna7267|organism=Nannochloropsis gaditana|type=CDS|length=2808bp|location=Sequence derived from alignment at CM002471.1:180687..182281- (Nannochloropsis gaditana)
CTCGTCGAAACCAATCCCTTTTGCCTCCTCGACTTCTTCATCGCCTCCCC
CTGGCAACGGAAGGGTCTGGGCGCCTCCTTGTTGCGCCTGGCGCTGTCTC
ACGAAGGGATTTCTGGGCCCCACTGTCTGGCCTTCGACCGACCCTCCCCT
CGACTCCTCCCCTTCCTAGCCAAGCACTTTGCCTTGAAGAAACACCGGGC
CCAGCACAACCATTTCCTTGTCTACGACGACTTTTTCTCCCCCTTCCCTT
CTCTCCCTTCCTGCTCCGTCACCTCCTCCTCCCCTCCCTGCCCGCCCTGG
TGCTCCTCTGGGGGGCCGTTGCCCTTTGTGAATAATCACTCTCTCGAATG
ACGTGTCTTCCTCCTTCGGCGTGTGCAGCCATCGACAGCCTGGCTGCCTG
CTCTGCCCGTGCCCAGGGACTGCGGAGGCCCATCTCCACTATCCGCTCCC
TTCAGGCATCAGATGATCACATTCTTTACATACTTGCCTCTACCGCGAGC
AACGTCGCCGACACGCCTCCTCCCTCTGCTTCTTTCTTGTCTTCCCCTCC
TTTTGTACCCTCCCCGCCCTGCTCCCAGCCCGCCGAGGCCGTGACACCCT
CCACGTCCCCGCCGTACATCTTCATCCTACCGTCTTCTGCCTCCTTCATT
GCCTTTGACCTGCCGCACGCTCCTTCATCCCCTTCCTTGAGCAGTCCATT
ATCGCCATCCTCATCACTTCCATGCACGGCGTCGACACCCTCCCCCGCTG
CCTCTTTCCCTTCCTCCCCCTCCTCCTCTTTCCTCGCCCTGGGCCTTCTC
AAGCTAGGCCAAAAACACCTGTACCTGACAAATCCTCAAGGACAGATGGA
AACGACTAAGGACAGAGGATGCGATCATGTGGCACAGGATGGTCGAACCT
CTTACACTGCCCTTCGTTTTGACAAAGCCGCCTTAGCTCGTCGAAACCAA
TCCCTTTTGCCTCCTCGACTTCTTCATCGCCTCCCCCTGGCAACGGAAGG
GTCTGGGCGCCTCCTTGTTGCGCCTGGCGCTGTCTCACGAAGGGATTTCT
GGGCCCCACTGTCTGGCCTTCGACCGACCCTCCCCTCGACTCCTCCCCTT
CCTAGCCAAGCACTTTGCCTTGAAGAAACACCGGGCCCAGCACAACCATT
TCCTTGTCTACGACGACTTTTTCTCCCCCTTCCCTTCTCTCCCTTCCTGC
TCCGTCACCTCCTCCTCCCCTCCCTGCCCGCCCTGGTGCTCCTCTGGGGG
GCCGTTGCCCTTTGTGAATAATCACTCTCTCGAATGACGTGTCTTCCTCC
TTCGGCGTGTGCAGCCATCGACAGCCTGGCTGCCTGCTCTGCCCGTGCCC
AGGGACTGCGGAGGCCCATCTCCACTATCCGCTCCCTTCAGGCATCAGAT
GATCACATTCTTTACATACTTGCCTCTACCGCGAGCAACGTCGCCGACAC
GCCTCCTCCCTCTGCTTCTTTCTTGTCTTCCCCTCCTTTTGTACCCTCCC
CGCCCTGCTCCCAGCCCGCCGAGGCCGTGACACCCTCCACGTCCCCGCCG
TACATCTTCATCCTACCGTCTTCTGCCTCCTTCATTGCCTTTGACCTGCC
GCACGCTCCTTCATCCCCTTCCTTGAGCAGTCCATTATCGCCATCCTCAT
CACTTCCATGCACGGCGTCGACACCCTCCCCCGCTGCCTCTTTCCCTTCC
TCCCCCTCCTCCTCTTTCCTCGCCCTGGGCCTTCTCAAGCTAGGCCAAAA
ACACCTGTACCTGACAAATCCTCAAGGACAGATGGAAACGACTAAGGACA
GAGGATGCGATCATGTGGCACAGGATGGTCGAACCTCTTACACTGCCCTT
CGTTTTGACAAAGCCGCCTTAGCTCGTCGAAACCAATCCCTTTTGCCTCC
TCGACTTCTTCATCGCCTCCCCCTGGCAACGGAAGGGTCTGGGCGCCTCC
TTGTTGCGCCTGGCGCTGTCTCACGAAGGGATTTCTGGGCCCCACTGTCT
GGCCTTCGACCGACCCTCCCCTCGACTCCTCCCCTTCCTAGCCAAGCACT
TTGCCTTGAAGAAACACCGGGCCCAGCACAACCATTTCCTTGTCTACGAC
GACTTTTTCTCCCCCTTCCCTTCTCTCCCTTCCTGCTCCGTCACCTCCTC
CTCCCCTCCCTGCCCGCCCTGGTGCTCCTCTGGGGGGCCGTTGCCCTTTG
TGAATAATCACTCTCTCGAATGACGTGTCTTCCTCCTTCGGCGTGTGCAG
CCATCGACAGCCTGGCTGCCTGCTCTGCCCGTGCCCAGGGACTGCGGAGG
CCCATCTCCACTATCCGCTCCCTTCAGGCATCAGATGATCACATTCTTTA
CATACTTGCCTCTACCGCGAGCAACGTCGCCGACACGCCTCCTCCCTCTG
CTTCTTTCTTGTCTTCCCCTCCTTTTGTACCCTCCCCGCCCTGCTCCCAG
CCCGCCGAGGCCGTGACACCCTCCACGTCCCCGCCGTACATCTTCATCCT
ACCGTCTTCTGCCTCCTTCATTGCCTTTGACCTGCCGCACGCTCCTTCAT
CCCCTTCCTTGAGCAGTCCATTATCGCCATCCTCATCACTTCCATGCACG
GCGTCGACACCCTCCCCCGCTGCCTCTTTCCCTTCCTCCCCCTCCTCCTC
TTTCCTCGCCCTGGGCCTTCTCAAGCTAGGCCAAAAACACCTGTACCTGA
CAAATCCTCAAGGACAGATGGAAACGACTAAGGACAGAGGATGCGATCAT
GTGGCACAGGATGGTCGAACCTCTTACACTGCCCTTCGTTTTGACAAAGC
CGCCTTAG
back to top
Synonyms
Publications