rna7256, rna7256 (mRNA) Nannochloropsis gaditana

Overview
Namerna7256
Unique Namerna7256
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1346
Alignment locationCM002471.1:132274..133099 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100275g2.7940.mrna
Orig protein idgnl|cribi|Naga_100275g2.7940
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:132274..133099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100275g2gene7021Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7256rna7256-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23435.1cds7239Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7256 ID=rna7256|Name=rna7256|organism=Nannochloropsis gaditana|type=mRNA|length=1346bp
GTGTACATGGCGCAGTGGAAGGGCGGGTGGGGAGGGTAGGCGGGATGTGG
GATGGATTTTCCGTGGCGGGGTCGACGTACAGGGTCCTCACTCCCTGTCT
CTTTTGTCGGGGCCTTTTCAAACATGGGCAAGCTCTTACAACCTGTGTCC
ACGCTGCATTCTGCTTGCCATACACGATGGGTTTCCTTGCCTCGCGTATG
ACTCGAAATGTGCGCACAGTGATTAAAATAACCCTGTAGAATTGCATTTC
GTGGTTGGATGCTCGGGGGAAGGTACCAGAGAGGAAAAGATATAAATGTG
CCCACTTTCCCTTGTATCCCCCTCATGCGTTCTTGCCTTTTCACATTAAA
AAGCACGTTACATAAGAACAAGTGAGTACCGGTCGGGACAAGTCCAGCAG
TAATGGAGCATGGGCAATTCGACCTCCATTGATCCACCTGGAGACGACAC
GCGCATCACCGATTTCAGGCCCCAACCACCAGCATTGAATTCGGGCAGTG
CCCCCACGGTCCGCACAACAGAAAACGTGCAAACACCTGGCCAAGAAGAT
CTTTCCTTGGCAAACATCGTCCCGGTTTCACTGCAAAGCAACGGGATTAC
ACACACTCCGGCTCCAAGCAGACCGCAAGCCCCCCCACGCAGCATGCTGG
CGCGGCGACCTTCCCGGGAACGGACGGGAGGCACCGTCGGGAAAAAAGGG
GATGGGAACAGATCGGATTGGGTCTGGGAAAACAGTCATTGGACAAAGCT
GAAAGCCAACAAAGATAAGGATCGTGAGGTGCCCAAGTGTCGATCAGGTC
ATGCCTGCGTCCAAATTGGCCACTACATGTATATCATTGGCGGATATTCC
GATGGCATCTGTTTTTCAGACGTGTATATTCTGGACCTAAACTCGCATTT
GTGGCGACACGTGGAGAACAGCGGGACCGTCGTACAGGGACGTGCTTCCC
ATTGCTGTTGCATCGGCCCGGGGAACCGCGATATCTACATGTTTGGCGGG
TCGGGTCCTTGCTGGGGCCGGACCAACCTGGGCGACCTCTGCAAGTTCGA
CACGGAGAAAGAGGAATGGTCCATCATGCCGTTGAGGGGTCAAATGCCCC
CCCCCGGGTACGGTCAGTCCCTCTGTGTCTACAAGCACCGTCTGATCCTG
TTCGGGGGGACCTGCGGTTCTTTCTTCTACAACCATCTCTTTGAATACGA
CACGAAGGAGCAGGTGGGCAGGCGGGATGGGGTCGAAGGGAGGAAGGGAG
GGAGGGAAGGGGGAGGAAGAAAACATGCCTTGCTTACGCAGGCATCCGCG
GTTGTTTTCTTCCAAAAGTTGACGCGTGTCTCACCGATTCCCTCCC
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protein sequence of rna7256

>rna7256-protein ID=rna7256-protein|Name=rna7256|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MFEKAPTKETGTNDSTRVSARNLLGSTLASLEATQHISDVEPQGRKHILQ
CKMSTKPHTREACLHAPTWQYLSVSQDENTFSAWAPLRHYNCLVLQHVRD
VYDLLKKGSVILSFRVV
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mRNA from alignment at CM002471.1:132274..133099+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7256 ID=rna7256|Name=rna7256|organism=Nannochloropsis gaditana|type=mRNA|length=826bp|location=Sequence derived from alignment at CM002471.1:132274..133099+ (Nannochloropsis gaditana)
ATGTTTGAAAAGGCCCCGACAAAAGAGACAGGGAGTGAGGACCCTGTACG
TCGACCCCGCCACGGAAAATCCATCCCACATCCCGcctaccctccccacc
cgcccttccactGCGCCATGTACACACATCGCGCATGTGCTCGCCTCGTC
GGAAAGCACATTCTCGTCCCATACCGAGGGACTATAGCGCCatatttttt
ggggggggggggcagaggaatAGCGATGCCAGCGAGTTGCCTGGAGGGAA
GCAAAGAGCTGCAGAGTCTCTCGCAAACTGCGAGAGAGACCACCCcgaag
gccatggccttcAAACACGCAATAAAATGGTGCCATAAACCATGATATGA
CTGAATGGCCTGGATACAGTAAAGCTGCATGGCACTGGTCGTTGAGCGTC
GCGATTTTCCGCAGACACAGCCAACGACTCGACCAGGGTCTCAGCGCGAA
ACCTGCTGGGAAGCACGCTTGCGTCTCTTGAGGCCACACAACACATCAGT
GACGTCGAGCCGCAAGGGCGAAAACACATCCTGCAATGCAAAATGTCAAC
CAAACCACATACAAGGGAGGCATGCTTGCATGCACCTACTTGGCAATATT
TGAGCGTGAGCCAGGACGAGAACACGTTCTCAGCATGGGCCCCGTTGTAC
CGAGGGCTGCCATCCTGCCAAAGATATTGATATAGACGGCTTTCTGGGGG
GTGGAACTGAAATGAGCACCGCATGCGATTAGGAGGCATTATAATTGTTT
GGTTCTCCAACATGTAAGAGACGTTTATGATTTGCTTAAGAAGGGGTCTG
TCATATTATCTTTTCGAGTTGTATGA
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Coding sequence (CDS) from alignment at CM002471.1:132274..133099+

>rna7256 ID=rna7256|Name=rna7256|organism=Nannochloropsis gaditana|type=CDS|length=1062bp|location=Sequence derived from alignment at CM002471.1:132274..133099+ (Nannochloropsis gaditana)
ATGTTTGAAAAGGCCCCGACAAAAGAGACAGGGACCAACGACTCGACCAG
GGTCTCAGCGCGAAACCTGCTGGGAAGCACGCTTGCGTCTCTTGAGGCCA
CACAACACATCAGTGACGTCGAGCCGCAAGGGCGAAAACACATCCTGCAA
TGCAAAATGTCAACCAAACCACATACAAGGGAGGCATGCTTGCATGCACC
TACTTGGCAATATTTGAGCGTGAGCCAGGACGAGAACACGTTCTCAGCAT
GGGCCCCGTTGAGGCATTATAATTGTTTGGTTCTCCAACATGTAAGAGAC
GTTTATGATTTGCTTAAGAAGGGGTCTGTCATATTATCTTTTCGAGTTGT
ATGAATGTTTGAAAAGGCCCCGACAAAAGAGACAGGGACCAACGACTCGA
CCAGGGTCTCAGCGCGAAACCTGCTGGGAAGCACGCTTGCGTCTCTTGAG
GCCACACAACACATCAGTGACGTCGAGCCGCAAGGGCGAAAACACATCCT
GCAATGCAAAATGTCAACCAAACCACATACAAGGGAGGCATGCTTGCATG
CACCTACTTGGCAATATTTGAGCGTGAGCCAGGACGAGAACACGTTCTCA
GCATGGGCCCCGTTGAGGCATTATAATTGTTTGGTTCTCCAACATGTAAG
AGACGTTTATGATTTGCTTAAGAAGGGGTCTGTCATATTATCTTTTCGAG
TTGTATGAATGTTTGAAAAGGCCCCGACAAAAGAGACAGGGACCAACGAC
TCGACCAGGGTCTCAGCGCGAAACCTGCTGGGAAGCACGCTTGCGTCTCT
TGAGGCCACACAACACATCAGTGACGTCGAGCCGCAAGGGCGAAAACACA
TCCTGCAATGCAAAATGTCAACCAAACCACATACAAGGGAGGCATGCTTG
CATGCACCTACTTGGCAATATTTGAGCGTGAGCCAGGACGAGAACACGTT
CTCAGCATGGGCCCCGTTGAGGCATTATAATTGTTTGGTTCTCCAACATG
TAAGAGACGTTTATGATTTGCTTAAGAAGGGGTCTGTCATATTATCTTTT
CGAGTTGTATGA
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Synonyms
Publications