rna7248, rna7248 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7248
Unique Name	rna7248
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2724
Alignment location	CM002471.1:118502..119830 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100594g4.9591.mrna
Orig protein id	gnl\|cribi\|Naga_100594g4.9591
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:118502..119830 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100594g4	gene7013	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7248	rna7248-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23443.1	cds7231	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:118502..119830+
coding sequence from alignment at CM002471.1:118502..119830+

mRNA sequence

>rna7248 ID=rna7248|Name=rna7248|organism=Nannochloropsis gaditana|type=mRNA|length=2724bp
ATGAGACAGACTACCCTAACCCACAAAGCCGTGGGGGCGGGGCTTTTGGC
CTTGGTCCTCCTCGCGCAAGCCAGCATGGCGTTCATTCCAGGGCGAATGG
CTGTCCGCACTCTTTTCCAGCCACTGAAACAACACCAGGCTTCCCGCGTG
GTGCTTTCCATGGCGGAAGCGATTGAGATCGCCATGCCTGCTCTGTCCTC
GACAATGACCGAAGGGAAAATTGTGGAATGGACTGCCAAAGTAGGGGACA
AGATCAAAGCCGGGCAAACCATCATGGTGGTGGAATCGGACAAGGCCGAC
ATGGACGTCGAAGCATTCGAAGAAGGTTTCCTTGCCAAGATTGTTTTTGG
GGACGGTGCTTCGGCCCCAGTGGGTGCCACGGTGGCATTGCTTGCCAGGT
CCAAGGAAGAAATTCCAGCCGTCCAAGCCATGACCCCTGGTGCCTCCCCT
GCGACGGCCCCAGCTGCTGCACCTGCTCCGGAAAGCTCCGCACCGGCAGG
TGGAGGTGCGTCCTTGGGCGTACCTACCAATGAAATCGCCATGCCTGCTC
TGTCCTCGACCATGACCGAAGGGAAAATTGTGGAATGGACTGTGAAAGTA
GGGGACAAGATCAAAGCCGGGCAAACCATCATGGTGGTGGAATCGGACAA
GGCCGACATGGACGTGGAAGCCTTCGAAAGCGGGTACGTCGCCGCGATTC
TGGCCAAGGCCGGGGAGGCGACCCTGGTGGGTGCGCCTTGCGCCCTGCTC
GTTGACAACGAGGCCGACGTCGAGAAGGTCAAGGCTGCCCTGGCAAGCGC
CGACGTTGACTTTGCGGAGGTGGCCATGCCTGCCTTGTCCTCGACCATGA
CCAGCGGGAAAATCGTGGCTTGGACGGCCAAAGTGGGCGACAGCGTGAAA
GCGGGCCAGACCGTGATGGTGGTGGAGTCGGACAAGGCGGACATGGACGT
GGAAGCCTTCGAAGGCGGCGTACTCGCCTCGATATTGACGGGCGAAGGAG
ATTCGGCGAAGGTGGGGGACCCCGTCGCCCTCTTGGCAGCCAAAAAGGAG
GACGTGCCCGCCCTCCAAGCCTACGGCCAGGCGCTCAAAGCCTCATTATC
CGGTGCTCCTGCCCCTGCGCCCGCCGTTTCGGCGGCGGCCGCCACGGCGC
CAGCGGCATCCACGCCTGTCGCAGCCACCGCGGTGAGTCCCCCGGGGGAG
CGTGTGGTCGCCTCCGGGTATGCGAAGAAGCTGGCTTCAGAGGCGGGAGT
GGACCTGCGGTCCGTCCCAGGGACGGGGCTGGGAGGACGCGTGGTGGGAG
CCAACGTGATTGCGGCGGCAGCGGGAAAACCCATGGCGAAGCCCTTGGGG
TACCGCTCTCCTCCTGGCTCGGCCACGCCTTTGGCCAAGCGGCTGGCGGC
GGAAGCCGGGCTGGATTTGAAAAGTTTGAAAGGTACGGGGGAGTTTGGGC
GGGTGACGGCGGACGACGTGTTGATTGCCACGGGGAAGAAGAGCCCGGTC
AAGAAGCAGGCAGCGGGCGGGAAGGCCGGGCCGGTCAAAGCGCCCAAACC
TGCTCCCGGTCCCATGCCCACGGGGACCAAATCCATGGACGGGATGATGA
AAGCCGTGGCGAAGAACATGGAGAAGACCTTGGACGTACCCATTTTCCGG
GTCTCGCGCCTGATCACCACGGACAAATTCGACAAGATGTATGCCGAGGT
CAAGGGCCAGGGGGTGTCGGTCTCGGCCCTCCTCGCCAAGGCAGTCGCCA
AGACCTTGGAGCGCCACCCGATCTTAAACGCGGCCTACGACCCCGCGGGC
GCCATCAAGTACAACCCGGATATCAACATTGCCATGGCAGTGGCCTTGGA
CGGCGGTCTGATCACGCCCACCCTCCGGAACGCCAACGCCATGGACCTGG
TCTCCCTGGGGGGGAAATGGCGGGAATTGGTCAAGAAAGCGCAGGAGAAA
CGCTTGGCCCCTGACGAATACACGACGGGTACTTTTACCATCAGCAACCT
GGGCATGTACGGGGTCTCGGCTTTCGACGCCATCCTGCCCCCTGGACAAG
GCTCGATTTTGGCGATCGGCGGTTCGATTCCCACCGTGGTTGTGCGCAAG
GACGGCAGCTTTGCCGTCCAGAAACAGATGACCGTGACCATCACGTGCGA
CCATCGGCACATTTATGGAGCGGACGCGGCAGAGTTTTTGCGGGATCTGG
CCGAGCTGATGGAGGAGGACGCGGGAGGGACGGACATAACAGTAGCGCGT
TTGGAGGGAGGAGCAACGATCGATTATAGATATTGGACGGTAAAAGGTGG
AACAGATTTAAGCCGGAGGAGTCTGTCGGCGGGTCCCTCTCTATGTGTCA
TATCTGTGCTGGAATGTGCGCGTGTGCGTGTGTGGGGTGTGTGGTGGTGG
GGCTTAGGTGCGTCAGACGGCGTCAGACCTGGAAGGTGGAAGAGAATGGA
GTCCTTTTGCATGTTTTTCTCCGTGTCATTTTGTATCTCCGTCATGCTAT
CTTTGGCGTACCGTCATGAATGTGTGCCATCACGAGACAAAGGTGGCTCT
GCGCGAACACAGCGACGGGTAAGAGAAGAAAAGAAAGACTTGGAGCAGAG
AAGGCCTCCTGTGTCGCATAACGTCGCGTATCGTACGAGCCTCGTATATC
GTGCTATTGCTTCGTTCTGGTTTACAGCCTTAGACCCCGATGCTCCAAGC
AGTCCCAGATTATTGCAGGCATGA

protein sequence of rna7248

>rna7248-protein ID=rna7248-protein|Name=rna7248|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MHKGRLIAWPVPAMMVGTTKKTSASRACPSTLTPAFSRYAALRFLARRTG
TGIVFFTVEDRAYAAFEPQSENILCREKAAPLWEDPQLMTAEALNEIFAP
DEKENIMLLRSMWTASCIFRLDGIFVDSLDLQARVWEQVAEGISGTPPSL
PPSFPPSLLPGPHLARASAR

mRNA from alignment at CM002471.1:118502..119830+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7248 ID=rna7248|Name=rna7248|organism=Nannochloropsis gaditana|type=mRNA|length=1329bp|location=Sequence derived from alignment at CM002471.1:118502..119830+ (Nannochloropsis gaditana)
AATGTCAGAACCTAAGCGTATATGCGGGCCAAATGCCTGattttttttgt
ttcctATCGCCCTCGGGTTGTATTTTTGTGCAGGAAAAAGCGGGGCATAC
TGCACACAAGCAGAACAATTTTCCTTCGTCCTGAGGTGCCCAATTACCAT
CATTGCGGCCTTCGTGGAAGTCAAGCTGCACATGGCAATGTCCTTTTGTG
CATCTACCCGCCCGACCACGACGTTGGTACTACTTGTCCTCTTGAAAGTG
GCCACGACCTTCGCTTtcatccccccttctctACCATTTTCGCTGCCCTC
TAACACTCCAACCCTTTTTCACGCACGGCGCGAGCCCTTTGAAGCTTGTG
GTATCCATGCACAAAGGCCGCTTAATCGCTTGGCCGGTGCCGGCAATGAT
GGTTGGaacgacgaagaagacgtCCGCTTCTCGGGCTTGTCCAAGCACAT
TGACACCGGCTTTCTCAAGGTACGCGGCTCTTCGTTTCCTCGCCCGTCGG
ACTGGCACAGGCATTGTCTTTTTCACCGTTGAAGATCGAGCTTATGCCGC
CTTTGAACCCCAGTCTGAAAACATTCTCTGTGTACGTCGTCAAAGGTCCC
CTAAAAACGGTCCCCGAAGTCATAGGACGTTGAAGGACGACCGCGGCTAC
CGCTTGTATCCTGCTTTTCGTCGGTGCGGGACAGAAAGTATGTGCCCCCC
GCGCTCCCTTCTcatgctccctctctccctccctccctccctccctccct
ccctactccctccctcagcgtGAGAAAGCCGCCCCTCTCTGGGAGGACCC
ACAACTTATGACCGCCGAAGCCTTGAACGAGATATTCGCGCCCGATGAGA
AGGAAAATATCATGCTCCTACGCTCCATGTGGACCGCGTCCTGCATTTTC
CGCcttggtggggagggagggagggaagcagggaggcagggaggcaggga
gggaggagctgacGGGTGTGTGTGCGGGGTTGAAAAGAGGCGGCAAGAAC
TTCACGGGAGGatacttttttttctcttcgtCCCTGGGACctttcgtctt
cttctttgtctttccctgtcctccttcgctcGCATGCATGTATACATACA
TTCTATCTATACATACATTATCTATTCACATCGTAAATCCGTCGTTTTCT
TGCCTGCGGTGTAAACACAGATGGCATTTTCGTCGACTCGCTCGACCTCC
AGGCCAGGGTCTGGGAGCAGGTGGCCGAGGGCATATCcggtactcctcct
tccctccctccctccttccctccctccctccttcccggacCTCATCTTGC
CCGTGCATCCGCCCGCtagccccctttcc

Coding sequence (CDS) from alignment at CM002471.1:118502..119830+

>rna7248 ID=rna7248|Name=rna7248|organism=Nannochloropsis gaditana|type=CDS|length=1539bp|location=Sequence derived from alignment at CM002471.1:118502..119830+ (Nannochloropsis gaditana)
ATGCACAAAGGCCGCTTAATCGCTTGGCCGGTGCCGGCAATGATGGTTGG
aacgacgaagaagacgtCCGCTTCTCGGGCTTGTCCAAGCACATTGACAC
CGGCTTTCTCAAGGTACGCGGCTCTTCGTTTCCTCGCCCGTCGGACTGGC
ACAGGCATTGTCTTTTTCACCGTTGAAGATCGAGCTTATGCCGCCTTTGA
ACCCCAGTCTGAAAACATTCTCTGTcgtGAGAAAGCCGCCCCTCTCTGGG
AGGACCCACAACTTATGACCGCCGAAGCCTTGAACGAGATATTCGCGCCC
GATGAGAAGGAAAATATCATGCTCCTACGCTCCATGTGGACCGCGTCCTG
CATTTTCCGCcttgATGGCATTTTCGTCGACTCGCTCGACCTCCAGGCCA
GGGTCTGGGAGCAGGTGGCCGAGGGCATATCcggtactcctccttccctc
cctccctccttccctccctccctccttcccggacCTCATCTTGCCCGTGC
ATCCGCCCGCtagATGCACAAAGGCCGCTTAATCGCTTGGCCGGTGCCGG
CAATGATGGTTGGaacgacgaagaagacgtCCGCTTCTCGGGCTTGTCCA
AGCACATTGACACCGGCTTTCTCAAGGTACGCGGCTCTTCGTTTCCTCGC
CCGTCGGACTGGCACAGGCATTGTCTTTTTCACCGTTGAAGATCGAGCTT
ATGCCGCCTTTGAACCCCAGTCTGAAAACATTCTCTGTcgtGAGAAAGCC
GCCCCTCTCTGGGAGGACCCACAACTTATGACCGCCGAAGCCTTGAACGA
GATATTCGCGCCCGATGAGAAGGAAAATATCATGCTCCTACGCTCCATGT
GGACCGCGTCCTGCATTTTCCGCcttgATGGCATTTTCGTCGACTCGCTC
GACCTCCAGGCCAGGGTCTGGGAGCAGGTGGCCGAGGGCATATCcggtac
tcctccttccctccctccctccttccctccctccctccttcccggacCTC
ATCTTGCCCGTGCATCCGCCCGCtagATGCACAAAGGCCGCTTAATCGCT
TGGCCGGTGCCGGCAATGATGGTTGGaacgacgaagaagacgtCCGCTTC
TCGGGCTTGTCCAAGCACATTGACACCGGCTTTCTCAAGGTACGCGGCTC
TTCGTTTCCTCGCCCGTCGGACTGGCACAGGCATTGTCTTTTTCACCGTT
GAAGATCGAGCTTATGCCGCCTTTGAACCCCAGTCTGAAAACATTCTCTG
TcgtGAGAAAGCCGCCCCTCTCTGGGAGGACCCACAACTTATGACCGCCG
AAGCCTTGAACGAGATATTCGCGCCCGATGAGAAGGAAAATATCATGCTC
CTACGCTCCATGTGGACCGCGTCCTGCATTTTCCGCcttgATGGCATTTT
CGTCGACTCGCTCGACCTCCAGGCCAGGGTCTGGGAGCAGGTGGCCGAGG
GCATATCcggtactcctccttccctccctccctccttccctccctccctc
cttcccggacCTCATCTTGCCCGTGCATCCGCCCGCtag

Synonyms

Publications