rna7242, rna7242 (mRNA) Nannochloropsis gaditana

Overview
Namerna7242
Unique Namerna7242
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length651
Alignment locationCM002471.1:105612..106452 +

Link to JBrowse

Properties
Property NameValue
Productmyb domain-containing protein
Orig transcript idgnl|cribi|Naga_101158g2.4009.mrna
Orig protein idgnl|cribi|Naga_101158g2.4009
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:105612..106452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101158g2gene7008Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7242rna7242-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23448.1cds7225Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7242 ID=rna7242|Name=rna7242|organism=Nannochloropsis gaditana|type=mRNA|length=651bp
ATGGCGATTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACCTGCAC
TCTCCGTTCTCTTTCCCTTCGCCTCCCCACTGCCCCCCCCGATCGTCATA
TCTCCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCAAACTG
AGTGGCAAGGAGGTTCCCTACTTTCAGGGGCCCGCCATTTGCTACAACAG
CGAGCAGGCAGCCTTCGAAGGGATCATGACGGGACAGGTCCACGCCGGCC
ACGTCCTCATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAATGCCT
GAGCAGCTTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGGAAGGA
TGTCGCACTGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGGGATCA
TGGTCGGACACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGGCCTTG
GTGGAAGATGGTGATACGGTTGTCATCGATATACAGAGACGAAAATTAAA
CCTTAAGCTTTCCTCCTCCGTACTCGCGGCTCGTCATGCCAAGTGGTGTT
TACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTTTGCAG
AAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACCCACTA
A
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protein sequence of rna7242

>rna7242-protein ID=rna7242-protein|Name=rna7242|organism=Nannochloropsis gaditana|type=polypeptide|length=249bp
MAQHQLIPFSRTLWSAHSLYCGYTGTGARPGHWTRRHLCVSLRDPQGPSS
LSIRVDLNLDMATSEWGEEVARRLGALKKRQEEEEEDDFSPEEDASEVEE
EEEEEEEEEEKILNAPGRRLSGRTKRGTAAKKHGGQETDTEDSEWATGSD
GVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQC
RERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN
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mRNA from alignment at CM002471.1:105612..106452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7242 ID=rna7242|Name=rna7242|organism=Nannochloropsis gaditana|type=mRNA|length=841bp|location=Sequence derived from alignment at CM002471.1:105612..106452+ (Nannochloropsis gaditana)
TGGCCATGAGCTTTCCCGCCGTGCCTCTCCATGCATGTCCAGTGCGCGGA
AAGCCTTGTGCATGTACTTGCCCTTCTAAGAGCAGGATTGTATTATGGCT
CAACATCAGCTAATTCCCTTTTCTCGTACGCTTTGGTCCGCTCATTCCCT
TTACTGTGGGTACACAGGGACAGGGGCACGACCTGGCCATTGGACACGAC
GGCATCTCTGTGTCAGCCTGAGAGATCCTCAaggcccttcttctctgtcT
ATTCGTGTAGATTTAAACCTCGATATGGCTACGTCAgagtggggggaaga
ggttgCCCGCAGGTTGGGTGCGCTCAAGAAgcggcaggaagaggaagagg
aggacgatttCTCtcccgaggaggacgcgagtgaggtggaggaggaggaa
gaagaggaggaggaagaagaggagaagatcCTCAATGCACCCGGTCGACG
TCTGAGTGGGCGGACAAAGCGTGGGACCGCCGCCAAGAAGCATGGTGGTC
AGGAGACCGACACGGAGGATTCGGAATGGGCCACAGGCAGCGACGGCGTG
CGCCGACGCCGGAAGCAATTGACGCAAAAAtggacgcaggaggaggacac
caTACTGGCAGAGCTGGTCCGTATCCATGGGCAAAGGGACTGGGGCTTGG
TTGCCAGCCATATGCCGGGCAACAttcggaaggggaagcaatGCCGGGAG
CGTTGGCGGAACCAGTTGGACCCGAACATCAAGCGCGACCCCTggacgcc
ggaggaggaacggatgCTGATCGAAGCGCATGCCAAGTGGGGCAACAAGT
GGGCGGACATTGCCAAGCTCTTGCCGGGACGGACGGATAAC
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Coding sequence (CDS) from alignment at CM002471.1:105612..106452+

>rna7242 ID=rna7242|Name=rna7242|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at CM002471.1:105612..106452+ (Nannochloropsis gaditana)
ATGGCTCAACATCAGCTAATTCCCTTTTCTCGTACGCTTTGGTCCGCTCA
TTCCCTTTACTGTGGGTACACAGGGACAGGGGCACGACCTGGCCATTGGA
CACGACGGCATCTCTGTGTCAGCCTGAGAGATCCTCAaggcccttcttct
ctgtcTATTCGTGTAGATTTAAACCTCGATATGGCTACGTCAgagtgggg
ggaagaggttgCCCGCAGGTTGGGTGCGCTCAAGAAgcggcaggaagagg
aagaggaggacgatttCTCtcccgaggaggacgcgagtgaggtggaggag
gaggaagaagaggaggaggaagaagaggagaagatcCTCAATGCACCCGG
TCGACGTCTGAGTGGGCGGACAAAGCGTGGGACCGCCGCCAAGAAGCATG
GTGGTCAGGAGACCGACACGGAGGATTCGGAATGGGCCACAGGCAGCGAC
GGCGTGCGCCGACGCCGGAAGCAATTGACGCAAAAAtggacgcaggagga
ggacaccaTACTGGCAGAGCTGGTCCGTATCCATGGGCAAAGGGACTGGG
GCTTGGTTGCCAGCCATATGCCGGGCAACAttcggaaggggaagcaatGC
CGGGAGCGTTGGCGGAACCAGTTGGACCCGAACATCAAGCGCGACCCCTg
gacgccggaggaggaacggatgCTGATCGAAGCGCATGCCAAGTGGGGCA
ACAAGTGGGCGGACATTGCCAAGCTCTTGCCGGGACGGACGGATAAC
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Synonyms
Publications