EWM23448.1, cds7225 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|585104485|gb|EWM23448.1| (myb domain-containing protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 505.753 bits (1301), Expect = 0.000e+0 Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query: 1 MAQHQLIPFSRTLWSAHSLYCGYTGTGARPGHWTRRHLCVSLRDPQGPSSLSIRVDLNLDMATSEWGEEVARRLGALKKRQEEEEEDDFSPEEDASEVEEEEEEEEEEEEKILNAPGRRLSGRTKRGTAAKKHGGQETDTEDSEWATGSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
MAQHQLIPFSRTLWSAHSLYCGYTGTGARPGHWTRRHLCVSLRDPQGPSSLSIRVDLNLDMATSEWGEEVARRLGALKKRQEEEEEDDFSPEEDASEVEEEEEEEEEEEEKILNAPGRRLSGRTKRGTAAKKHGGQETDTEDSEWATGSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN
Sbjct: 1 MAQHQLIPFSRTLWSAHSLYCGYTGTGARPGHWTRRHLCVSLRDPQGPSSLSIRVDLNLDMATSEWGEEVARRLGALKKRQEEEEEDDFSPEEDASEVEEEEEEEEEEEEKILNAPGRRLSGRTKRGTAAKKHGGQETDTEDSEWATGSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|673017204|ref|XP_008862563.1| (hypothetical protein H310_01276 [Aphanomyces invadans] >gi|574481766|gb|ETW08758.1| hypothetical protein H310_01276 [Aphanomyces invadans]) HSP 1 Score: 129.028 bits (323), Expect = 9.610e-33 Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 0
Query: 148 GSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
GSD RK ++ KWT EED+++ ELV+ HG R W ++ S +PG R GKQCRERW NQLDP+I++DPWT +EE +L AH K+GNKWA+IAKLLPGRTDN
Sbjct: 15 GSD-----RKSIS-KWTPEEDSLMMELVQTHGTRRWSVIGSLLPG--RNGKQCRERWHNQLDPSIRKDPWTTDEETLLKVAHHKYGNKWAEIAKLLPGRTDN 108
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|635366928|emb|CCI44816.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 125.946 bits (315), Expect = 1.870e-31 Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 0
Query: 152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
VR+ RK ++ KWT EED ++ +LV +G R W ++ + +PG R GKQCRERW NQLDP+I++DPWT EEER+L EAH K+GNKWA+IAK LPGRTDN
Sbjct: 23 VRKDRKPVS-KWTDEEDNMMIKLVERYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPSIRKDPWTDEEERILKEAHEKYGNKWAEIAKKLPGRTDN 117
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|698777020|ref|XP_009821554.1| (hypothetical protein H257_00523 [Aphanomyces astaci] >gi|574123679|gb|ETV89154.1| hypothetical protein H257_00523 [Aphanomyces astaci]) HSP 1 Score: 124.405 bits (311), Expect = 6.517e-31 Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 0
Query: 156 RKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
RK ++ KWT EED ++ ELV+ HG R W ++ S + G R GKQCRERW NQLDP+I++DPWT +EE +L AH K+GNKWA+IAKLLPGRTDN
Sbjct: 18 RKSIS-KWTPEEDALMMELVQTHGTRRWSVIGSLLSG--RNGKQCRERWHNQLDPSIRKDPWTSDEETLLKVAHHKYGNKWAEIAKLLPGRTDN 108
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|301123585|ref|XP_002909519.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262100281|gb|EEY58333.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 125.176 bits (313), Expect = 8.747e-31 Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 0
Query: 150 DGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
D R+ ++ KWT++ED ++ +LV+ +G R W ++ + +PG R GKQCRERW NQLDP I+++PWTPEEER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct: 22 DPPTRKERKPVCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPEEERILKELHDKFGNKWAEIAKMLPGRTDN 119
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|325183083|emb|CCA17540.1| (myblike DNAbinding protein putative [Albugo laibachii Nc14]) HSP 1 Score: 124.02 bits (310), Expect = 1.714e-30 Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 0
Query: 154 RRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
R+ ++ KWT EED+++ +LV +G R W ++ + +PG R GKQCRERW NQLDP+I++DPWT EER+L EAH K+GNKWA+IAK LPGRTDN
Sbjct: 41 RKDRKPVSKWTDEEDSLMMKLVERYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPSIRKDPWTDVEERILKEAHGKYGNKWAEIAKKLPGRTDN 134
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|291001825|ref|XP_002683479.1| (predicted protein [Naegleria gruberi] >gi|284097108|gb|EFC50735.1| predicted protein, partial [Naegleria gruberi]) HSP 1 Score: 117.472 bits (293), Expect = 5.235e-30 Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0
Query: 163 WTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
WTQEED + ELV+ +G + W L+A H+PG I GKQCRERW N L+P+I + PWT EE+R++ +AH +GNKWA IAKLLPGRTDN
Sbjct: 8 WTQEEDNQVVELVKKYGAKKWSLIAQHLPGRI--GKQCRERWHNHLNPDINKGPWTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDN 92
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|568053489|gb|ETM50316.1| (hypothetical protein L914_05605 [Phytophthora parasitica]) HSP 1 Score: 123.25 bits (308), Expect = 5.241e-30 Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 0
Query: 152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
R+ RK + KWT++ED ++ +LV+ +G R W ++ + +PG R GKQCRERW NQLDP I+++PWTP+EER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct: 22 TRKERKPVC-KWTEKEDLMMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDN 116
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|570990459|gb|ETP48411.1| (hypothetical protein F442_05841 [Phytophthora parasitica P10297]) HSP 1 Score: 123.25 bits (308), Expect = 5.524e-30 Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 0
Query: 152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
R+ RK + KWT++ED ++ +LV+ +G R W ++ + +PG R GKQCRERW NQLDP I+++PWTP+EER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct: 22 TRKERKPVC-KWTEKEDLMMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDN 116
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|675188847|ref|XP_008903308.1| (hypothetical protein PPTG_10384 [Phytophthora parasitica INRA-310] >gi|568023098|gb|ETL97162.1| hypothetical protein L917_05487 [Phytophthora parasitica] >gi|568096770|gb|ETN11517.1| hypothetical protein PPTG_10384 [Phytophthora parasitica INRA-310]) HSP 1 Score: 122.865 bits (307), Expect = 7.185e-30 Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 0
Query: 152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
R+ RK + KWT++ED ++ +LV+ +G R W ++ + +PG R GKQCRERW NQLDP I+++PWTP+EER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct: 22 TRKERKPVC-KWTEKEDLMMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDN 116 The following BLAST results are available for this feature:
BLAST of EWM23448.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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