EWM23448.1, cds7225 (CDS) Nannochloropsis gaditana

Overview
NameEWM23448.1
Unique Namecds7225
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:105706..106452 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23448.1
Productmyb domain-containing protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101158g2.4009.mrna
GbkeyCDS
End range.
End range106452
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:105706..106452 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|585104485|gb|EWM23448.1| (myb domain-containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 505.753 bits (1301), Expect = 0.000e+0
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0
Query:    1 MAQHQLIPFSRTLWSAHSLYCGYTGTGARPGHWTRRHLCVSLRDPQGPSSLSIRVDLNLDMATSEWGEEVARRLGALKKRQEEEEEDDFSPEEDASEVEEEEEEEEEEEEKILNAPGRRLSGRTKRGTAAKKHGGQETDTEDSEWATGSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
            MAQHQLIPFSRTLWSAHSLYCGYTGTGARPGHWTRRHLCVSLRDPQGPSSLSIRVDLNLDMATSEWGEEVARRLGALKKRQEEEEEDDFSPEEDASEVEEEEEEEEEEEEKILNAPGRRLSGRTKRGTAAKKHGGQETDTEDSEWATGSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN
Sbjct:    1 MAQHQLIPFSRTLWSAHSLYCGYTGTGARPGHWTRRHLCVSLRDPQGPSSLSIRVDLNLDMATSEWGEEVARRLGALKKRQEEEEEDDFSPEEDASEVEEEEEEEEEEEEKILNAPGRRLSGRTKRGTAAKKHGGQETDTEDSEWATGSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|673017204|ref|XP_008862563.1| (hypothetical protein H310_01276 [Aphanomyces invadans] >gi|574481766|gb|ETW08758.1| hypothetical protein H310_01276 [Aphanomyces invadans])

HSP 1 Score: 129.028 bits (323), Expect = 9.610e-33
Identity = 62/102 (60.78%), Postives = 78/102 (76.47%), Query Frame = 0
Query:  148 GSDGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
            GSD     RK ++ KWT EED+++ ELV+ HG R W ++ S +PG  R GKQCRERW NQLDP+I++DPWT +EE +L  AH K+GNKWA+IAKLLPGRTDN
Sbjct:   15 GSD-----RKSIS-KWTPEEDSLMMELVQTHGTRRWSVIGSLLPG--RNGKQCRERWHNQLDPSIRKDPWTTDEETLLKVAHHKYGNKWAEIAKLLPGRTDN 108          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|635366928|emb|CCI44816.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 125.946 bits (315), Expect = 1.870e-31
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 0
Query:  152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
            VR+ RK ++ KWT EED ++ +LV  +G R W ++ + +PG  R GKQCRERW NQLDP+I++DPWT EEER+L EAH K+GNKWA+IAK LPGRTDN
Sbjct:   23 VRKDRKPVS-KWTDEEDNMMIKLVERYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPSIRKDPWTDEEERILKEAHEKYGNKWAEIAKKLPGRTDN 117          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|698777020|ref|XP_009821554.1| (hypothetical protein H257_00523 [Aphanomyces astaci] >gi|574123679|gb|ETV89154.1| hypothetical protein H257_00523 [Aphanomyces astaci])

HSP 1 Score: 124.405 bits (311), Expect = 6.517e-31
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 0
Query:  156 RKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
            RK ++ KWT EED ++ ELV+ HG R W ++ S + G  R GKQCRERW NQLDP+I++DPWT +EE +L  AH K+GNKWA+IAKLLPGRTDN
Sbjct:   18 RKSIS-KWTPEEDALMMELVQTHGTRRWSVIGSLLSG--RNGKQCRERWHNQLDPSIRKDPWTSDEETLLKVAHHKYGNKWAEIAKLLPGRTDN 108          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|301123585|ref|XP_002909519.1| (myb-like DNA-binding protein, putative [Phytophthora infestans T30-4] >gi|262100281|gb|EEY58333.1| myb-like DNA-binding protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 125.176 bits (313), Expect = 8.747e-31
Identity = 56/100 (56.00%), Postives = 77/100 (77.00%), Query Frame = 0
Query:  150 DGVRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
            D   R+ ++   KWT++ED ++ +LV+ +G R W ++ + +PG  R GKQCRERW NQLDP I+++PWTPEEER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct:   22 DPPTRKERKPVCKWTEKEDLLMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPEEERILKELHDKFGNKWAEIAKMLPGRTDN 119          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|325183083|emb|CCA17540.1| (myblike DNAbinding protein putative [Albugo laibachii Nc14])

HSP 1 Score: 124.02 bits (310), Expect = 1.714e-30
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 0
Query:  154 RRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
            R+ ++   KWT EED+++ +LV  +G R W ++ + +PG  R GKQCRERW NQLDP+I++DPWT  EER+L EAH K+GNKWA+IAK LPGRTDN
Sbjct:   41 RKDRKPVSKWTDEEDSLMMKLVERYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPSIRKDPWTDVEERILKEAHGKYGNKWAEIAKKLPGRTDN 134          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|291001825|ref|XP_002683479.1| (predicted protein [Naegleria gruberi] >gi|284097108|gb|EFC50735.1| predicted protein, partial [Naegleria gruberi])

HSP 1 Score: 117.472 bits (293), Expect = 5.235e-30
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 0
Query:  163 WTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
            WTQEED  + ELV+ +G + W L+A H+PG I  GKQCRERW N L+P+I + PWT EE+R++ +AH  +GNKWA IAKLLPGRTDN
Sbjct:    8 WTQEEDNQVVELVKKYGAKKWSLIAQHLPGRI--GKQCRERWHNHLNPDINKGPWTEEEDRIIYQAHKDYGNKWAQIAKLLPGRTDN 92          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|568053489|gb|ETM50316.1| (hypothetical protein L914_05605 [Phytophthora parasitica])

HSP 1 Score: 123.25 bits (308), Expect = 5.241e-30
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 0
Query:  152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
             R+ RK +  KWT++ED ++ +LV+ +G R W ++ + +PG  R GKQCRERW NQLDP I+++PWTP+EER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct:   22 TRKERKPVC-KWTEKEDLMMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDN 116          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|570990459|gb|ETP48411.1| (hypothetical protein F442_05841 [Phytophthora parasitica P10297])

HSP 1 Score: 123.25 bits (308), Expect = 5.524e-30
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 0
Query:  152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
             R+ RK +  KWT++ED ++ +LV+ +G R W ++ + +PG  R GKQCRERW NQLDP I+++PWTP+EER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct:   22 TRKERKPVC-KWTEKEDLMMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDN 116          
BLAST of EWM23448.1 vs. NCBI_GenBank
Match: gi|675188847|ref|XP_008903308.1| (hypothetical protein PPTG_10384 [Phytophthora parasitica INRA-310] >gi|568023098|gb|ETL97162.1| hypothetical protein L917_05487 [Phytophthora parasitica] >gi|568096770|gb|ETN11517.1| hypothetical protein PPTG_10384 [Phytophthora parasitica INRA-310])

HSP 1 Score: 122.865 bits (307), Expect = 7.185e-30
Identity = 56/98 (57.14%), Postives = 77/98 (78.57%), Query Frame = 0
Query:  152 VRRRRKQLTQKWTQEEDTILAELVRIHGQRDWGLVASHMPGNIRKGKQCRERWRNQLDPNIKRDPWTPEEERMLIEAHAKWGNKWADIAKLLPGRTDN 249
             R+ RK +  KWT++ED ++ +LV+ +G R W ++ + +PG  R GKQCRERW NQLDP I+++PWTP+EER+L E H K+GNKWA+IAK+LPGRTDN
Sbjct:   22 TRKERKPVC-KWTEKEDLMMLKLVQKYGTRHWTIIGTKLPG--RNGKQCRERWHNQLDPAIRKEPWTPDEERILKELHDKFGNKWAEIAKMLPGRTDN 116          
The following BLAST results are available for this feature:
BLAST of EWM23448.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104485|gb|EWM23448.1|0.000e+0100.00myb domain-containing protein, partial [Nannochlor... [more]
gi|673017204|ref|XP_008862563.1|9.610e-3360.78hypothetical protein H310_01276 [Aphanomyces invad... [more]
gi|635366928|emb|CCI44816.1|1.870e-3161.22unnamed protein product [Albugo candida][more]
gi|698777020|ref|XP_009821554.1|6.517e-3161.70hypothetical protein H257_00523 [Aphanomyces astac... [more]
gi|301123585|ref|XP_002909519.1|8.747e-3156.00myb-like DNA-binding protein, putative [Phytophtho... [more]
gi|325183083|emb|CCA17540.1|1.714e-3058.33myblike DNAbinding protein putative [Albugo laibac... [more]
gi|291001825|ref|XP_002683479.1|5.235e-3060.92predicted protein [Naegleria gruberi] >gi|28409710... [more]
gi|568053489|gb|ETM50316.1|5.241e-3057.14hypothetical protein L914_05605 [Phytophthora para... [more]
gi|570990459|gb|ETP48411.1|5.524e-3057.14hypothetical protein F442_05841 [Phytophthora para... [more]
gi|675188847|ref|XP_008903308.1|7.185e-3057.14hypothetical protein PPTG_10384 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7242rna7242Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications