rna7241, rna7241 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7241
Unique Name	rna7241
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1075
Alignment location	CM002471.1:103143..104747 +

Link to JBrowse

Properties


Property Name	Value
Product	dihydroxy-acid dehydratase
Orig transcript id	gnl\|cribi\|Naga_101158g1.4010.mrna
Orig protein id	gnl\|cribi\|Naga_101158g1.4010
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002471.1	supercontig	CM002471.1:103143..104747 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101158g1	gene7007	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7241	rna7241-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23449.1	cds7224	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002471.1:103143..104747+
coding sequence from alignment at CM002471.1:103143..104747+

mRNA sequence

>rna7241 ID=rna7241|Name=rna7241|organism=Nannochloropsis gaditana|type=mRNA|length=1075bp
CACAAAGCAAGCACGTGCCTGCGGCCTGATTTTCTCTTGCCTGCTCCTTT
TTGTTCTTTTAAACATGTCAGCACTATTGAACCACCACAATATAATCTCA
GACATTCATAGAAACTTATTTGTTTGACCACCATATCAGACCACACGCAA
TAGGGACATACATCGAAACGAGCGCGCTGTCGAGGAACATGCGTCGTCTC
TCGTTTAGCAGCACTGGCCGCATCACCCTCTTGCCTTCCTTCTATGTCGC
GGCCCTTTTGCTCAATGTACTTATGCTCACGATTGAAGGGTGGCATGTAC
CTACGGTGCGAAGCTCAAGCCTGCTAACCAATAAAATAAGAAGCCACGGC
AGCATTTTTCCCTTTTGTTCCACATCCTCCACCTCCCCTGTGTGTTGTCG
CCCCCCCCGGCCGACTCTCACTCGCCTGCATGCGAATTTCCCGGAGGACG
AGCAGGAAGAGGAGGAGTGGCCTGGCTCCCTGCGTCGCTCGGGTCAAGAA
GGAGGGAACGGGGGAGGAGGAGGGGAAGGACCGAACGGACCGAGGGGGCA
AGACGTGCAGCCGGACGTGGTGATGGTAGATATGACGGAGGACGGCGAGC
CCCCCCGAGTGACGGTGAAAGCTTCGTACAATGTGAATGATGATTTAGGA
CCCGTCATCTCCACGCTGTGGAGAGGGATTGTCCTGCTGGACCGGGAAGG
CACTTCGCGGCGAAGCGCCCAGATGACCATCCTCTCCGTCGGGTGCGTGG
GGGAGGAGAGGCCAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGA
AGACAGTGATTTTCTGTCTGCAGCCTGCCATCTTCCCGTGGCCATCCAGT
GCGCTGAGGGAGGTTGGGAGGTTGTTGAGGTTGCGAGGGAAGAGCTGAAA
AAAGGACACGGCCCCTGTGCCCTCCCTCGCCCTCCTTCCCTCCCTCCTTC
AAGACCTCCCCCCCTCCTCCTCCTCCTTCCTCTTCCCCTTGGCCCCTTTC
CTCCTCTCCCTCACCTACTTCCCTTCCGCGCTTCTTCCTCCCCTCCCTTC
CACCTCGCACTCTCTAATCCTTCCC

protein sequence of rna7241

>rna7241-protein ID=rna7241-protein|Name=rna7241|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MAIASPSLETPSPRTCTLRSLSLRLPTAPPDRHISILTGSLAPDSAVLKL
SGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMP
EQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLAL
VEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRRGALQ
KYTRLVQSAHVGAVTH

mRNA from alignment at CM002471.1:103143..104747+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7241 ID=rna7241|Name=rna7241|organism=Nannochloropsis gaditana|type=mRNA|length=1605bp|location=Sequence derived from alignment at CM002471.1:103143..104747+ (Nannochloropsis gaditana)
atggcgaTTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACCTGCAC
TCTGTCCCATCAATCGAAGAgcttcccgccccttcctctcccccatcctc
cccccccgcctcccgccctgcctccaccccctcctcccctcctacccaag
ccgttctctttcccttcgcctccccacTGCCCCCCCCGATCGTCATATCT
CCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCAAACTGAGT
GGCAAGGTGCCTacctaccccctccctccctccctccctccctccattct
ccttcgccttgggCGCTATGTTTAGCCTTGTCTCACCCATAATACTTCCT
CTTCTGCCTTGTTCTCCCCTACGCttcctccgttccctccctccctcctt
ccctccccgcctccctccctcccttcctcaggaGGTTCCCTACTTTCAGG
GGCCCGCCATTTGCTACAACAGCGAGCAGGCAGCCTTCGAAGGGATCATG
ACGGGACAGGTAggtagagagagagggagggagggaggggggagaacaTG
GATGATTTAATTGCCCCCTTGTGCCTTAGACACGAGTCatgccatgtcct
cccctcaAATCCTCTGTCGATTGGaatcgcctccctccttcccccctgcc
ctccttttcgccctcccccccgccctcaagGTCCACGCCGGCCACGTCCT
CATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAATGCCTGAGCAGC
TTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGGAAGTACGTCGGT
CTACATGCcgtctcttctcccttccctccttccctccctccctcccctcc
tccctccctccttgtctttcccacgccctccatttgCCTCGCGCGTAATT
CtattcttttctttcctcccaaaCCAAATAACGAGCATGCTTTTCCATTC
TCCCAGCATGCACTTGAACGGAAGGCAAAATACCACGGCCCCTCCCAAgt
tccctcttttcccttgacaagccccccctacccctctCCCGAAACCTTCa
ccttcccttgccctccccttttcctccctcacacgGCAGGGATGTCGCAC
TGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGGGATCATGGTCGGA
CACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGGCCTTGGTGGAAGA
TGGTGATACGGTTGTCATCGATATACAGGTAGGCAAGTTATCAAAGAAAC
ATGACATTTGTGTTTATTGATTTTTGACGCGGTACCTTGACTCGAGTTGG
TTGAAGTAGCGGGTTCAAAAGGACTAGAGCAGCTTTGTGTGGGACTCTGC
TCCAGAAACGACTAGCACTTTTCTCCTTTATTGCTTCTTTACTAGCGGCT
CATGCTACATCATTCTCCCCAAACCACCGGCTACCGCCAGAGACGAAAAT
TAAACCTtaagctttcctcctccgtacTCGCGGCTCGTCATGCCAAGTGG
TGTTTACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTTT
GCAGAAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACCC
Actaa

Coding sequence (CDS) from alignment at CM002471.1:103143..104747+

>rna7241 ID=rna7241|Name=rna7241|organism=Nannochloropsis gaditana|type=CDS|length=3906bp|location=Sequence derived from alignment at CM002471.1:103143..104747+ (Nannochloropsis gaditana)
atggcgaTTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACCTGCAC
TCTccgttctctttcccttcgcctccccacTGCCCCCCCCGATCGTCATA
TCTCCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCAAACTG
AGTGGCAAGgaGGTTCCCTACTTTCAGGGGCCCGCCATTTGCTACAACAG
CGAGCAGGCAGCCTTCGAAGGGATCATGACGGGACAGGTCCACGCCGGCC
ACGTCCTCATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAATGCCT
GAGCAGCTTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGGAAGGA
TGTCGCACTGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGGGATCA
TGGTCGGACACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGGCCTTG
GTGGAAGATGGTGATACGGTTGTCATCGATATACAGAGACGAAAATTAAA
CCTtaagctttcctcctccgtacTCGCGGCTCGTCATGCCAAGTGGTGTT
TACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTTTGCAG
AAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACCCActa
aatggcgaTTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACCTGCA
CTCTccgttctctttcccttcgcctccccacTGCCCCCCCCGATCGTCAT
ATCTCCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCAAACT
GAGTGGCAAGgaGGTTCCCTACTTTCAGGGGCCCGCCATTTGCTACAACA
GCGAGCAGGCAGCCTTCGAAGGGATCATGACGGGACAGGTCCACGCCGGC
CACGTCCTCATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAATGCC
TGAGCAGCTTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGGAAGG
ATGTCGCACTGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGGGATC
ATGGTCGGACACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGGCCTT
GGTGGAAGATGGTGATACGGTTGTCATCGATATACAGAGACGAAAATTAA
ACCTtaagctttcctcctccgtacTCGCGGCTCGTCATGCCAAGTGGTGT
TTACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTTTGCA
GAAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACCCAct
aaatggcgaTTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACCTGC
ACTCTccgttctctttcccttcgcctccccacTGCCCCCCCCGATCGTCA
TATCTCCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCAAAC
TGAGTGGCAAGgaGGTTCCCTACTTTCAGGGGCCCGCCATTTGCTACAAC
AGCGAGCAGGCAGCCTTCGAAGGGATCATGACGGGACAGGTCCACGCCGG
CCACGTCCTCATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAATGC
CTGAGCAGCTTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGGAAG
GATGTCGCACTGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGGGAT
CATGGTCGGACACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGGCCT
TGGTGGAAGATGGTGATACGGTTGTCATCGATATACAGAGACGAAAATTA
AACCTtaagctttcctcctccgtacTCGCGGCTCGTCATGCCAAGTGGTG
TTTACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTTTGC
AGAAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACCCAc
taaatggcgaTTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACCTG
CACTCTccgttctctttcccttcgcctccccacTGCCCCCCCCGATCGTC
ATATCTCCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCAAA
CTGAGTGGCAAGgaGGTTCCCTACTTTCAGGGGCCCGCCATTTGCTACAA
CAGCGAGCAGGCAGCCTTCGAAGGGATCATGACGGGACAGGTCCACGCCG
GCCACGTCCTCATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAATG
CCTGAGCAGCTTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGGAA
GGATGTCGCACTGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGGGA
TCATGGTCGGACACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGGCC
TTGGTGGAAGATGGTGATACGGTTGTCATCGATATACAGAGACGAAAATT
AAACCTtaagctttcctcctccgtacTCGCGGCTCGTCATGCCAAGTGGT
GTTTACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTTTG
CAGAAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACCCA
ctaaatggcgaTTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACCT
GCACTCTccgttctctttcccttcgcctccccacTGCCCCCCCCGATCGT
CATATCTCCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCAA
ACTGAGTGGCAAGgaGGTTCCCTACTTTCAGGGGCCCGCCATTTGCTACA
ACAGCGAGCAGGCAGCCTTCGAAGGGATCATGACGGGACAGGTCCACGCC
GGCCACGTCCTCATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAAT
GCCTGAGCAGCTTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGGA
AGGATGTCGCACTGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGGG
ATCATGGTCGGACACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGGC
CTTGGTGGAAGATGGTGATACGGTTGTCATCGATATACAGAGACGAAAAT
TAAACCTtaagctttcctcctccgtacTCGCGGCTCGTCATGCCAAGTGG
TGTTTACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTTT
GCAGAAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACCC
ActaaatggcgaTTGCCTCACCGTCACTGGAAACACCCTCGCCGAGAACC
TGCACTCTccgttctctttcccttcgcctccccacTGCCCCCCCCGATCG
TCATATCTCCATCCTGACGGGCTCGCTGGCCCCAGACTCAGCCGTGCTCA
AACTGAGTGGCAAGgaGGTTCCCTACTTTCAGGGGCCCGCCATTTGCTAC
AACAGCGAGCAGGCAGCCTTCGAAGGGATCATGACGGGACAGGTCCACGC
CGGCCACGTCCTCATTATTCGCTATGAGGGCCCCAAAGGCTCACCTGGAA
TGCCTGAGCAGCTTTCTCCAGGCGCTGCCCTGGTCGGAGCTGGGCTCGGG
AAGGATGTCGCACTGGTGACCGACGGGAGATTTTCCGGCGCCTCCCACGG
GATCATGGTCGGACACGTCGCACCAGAGGCCGCCGAAGGGGGACCATTGG
CCTTGGTGGAAGATGGTGATACGGTTGTCATCGATATACAGAGACGAAAA
TTAAACCTtaagctttcctcctccgtacTCGCGGCTCGTCATGCCAAGTG
GTGTTTACCTCCTACAGTGGCAGCCTCGTTTGATTGTCGGAGGGGCGCTT
TGCAGAAATATACACGACTCGTACAAAGTGCCCATGTCGGAGCAGTCACC
CActaa

Synonyms

Publications