EWM23449.1, cds7224 (CDS) Nannochloropsis gaditana

Overview
NameEWM23449.1
Unique Namecds7224
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:103143..103195 +
Alignment locationCM002471.1:103293..103398 +
Alignment locationCM002471.1:103574..103651 +
Alignment locationCM002471.1:103823..103932 +
Alignment locationCM002471.1:104232..104370 +
Alignment locationCM002471.1:104583..104747 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23449.1
Productdihydroxy-acid dehydratase
Orig transcript idgnl|cribi|Naga_101158g1.4010.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:103143..103195 +
CM002471.1supercontigCM002471.1:103293..103398 +
CM002471.1supercontigCM002471.1:103574..103651 +
CM002471.1supercontigCM002471.1:103823..103932 +
CM002471.1supercontigCM002471.1:104232..104370 +
CM002471.1supercontigCM002471.1:104583..104747 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR015928Aconitase/3IPM_dehydase_swvl
IPR020558DiOHA_6PGluconate_deHydtase_CS
IPR000581DiOHA_6PGluconate_deHydtase
Homology
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|585104486|gb|EWM23449.1| (dihydroxy-acid dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 436.802 bits (1122), Expect = 6.585e-155
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0
Query:    1 MAIASPSLETPSPRTCTLRSLSLRLPTAPPDRHISILTGSLAPDSAVLKLSGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRRGALQKYTRLVQSAHVGAVTH 216
            MAIASPSLETPSPRTCTLRSLSLRLPTAPPDRHISILTGSLAPDSAVLKLSGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRRGALQKYTRLVQSAHVGAVTH
Sbjct:    1 MAIASPSLETPSPRTCTLRSLSLRLPTAPPDRHISILTGSLAPDSAVLKLSGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRRGALQKYTRLVQSAHVGAVTH 216          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|1005495303|ref|XP_015750264.1| (PREDICTED: dihydroxy-acid dehydratase 2-like isoform X2 [Acropora digitifera])

HSP 1 Score: 229.95 bits (585), Expect = 7.866e-70
Identity = 118/193 (61.14%), Postives = 144/193 (74.61%), Query Frame = 0
Query:   26 PTAPPDRHISILTGSLAPDSAVLKLSGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRR--GALQKYTRLVQSAHVGAVTH 216
            P AP  RHI IL G+LAP+SAVLKLSGK++  F+GPA+ ++ E+ AF+ I++G++ AG  L+IRYEGP+GSPGMPE LSP  ALVGAGLGK VALVTDGRFSGASHGIM+GHV+PEA  GGP+ L+ DGD VVID +   L+++LS   L  R  KW  PP        RR  G LQKYT+LV SAH GAVT+
Sbjct:  298 PLAPAGRHIVILKGNLAPESAVLKLSGKDIGPFRGPAVVFDGEEQAFQAIVSGKIKAGDALVIRYEGPRGSPGMPEMLSPSGALVGAGLGKSVALVTDGRFSGASHGIMIGHVSPEAQVGGPIGLLIDGDIVVIDTENGTLSVELSDEELRTRKTKWQ-PP-------LRRLTGLLQKYTKLVSSAHEGAVTY 482          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|922855909|gb|KOO24317.1| (dihydroxy-acid dehydratase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 230.72 bits (587), Expect = 2.019e-69
Identity = 116/193 (60.10%), Postives = 142/193 (73.58%), Query Frame = 0
Query:   21 LSLRLPTAPPDRHISILTGSLAPDSAVLKLSGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRRGALQKYTRLVQSAHVGA 213
            + L  P +   +HI +L GSLAP SAV+KLSGK +  F+GPA+C++SE  AF  IM G++  GH L+IRYEGPKG+PGMPE LSPGAALVG GLG  VALVTDGRFSGASHGIM+GHV PEA +GGPLA+V DGD V ID + + L+L +S+  +AAR   W  PP  A      +G L KYT+LVQSAH+GA
Sbjct:  367 MPLSAPLSAAGKHIIVLKGSLAPPSAVMKLSGKSLATFEGPAVCFDSEMDAFTAIMAGKIVKGHCLVIRYEGPKGAPGMPEMLSPGAALVGQGLGPHVALVTDGRFSGASHGIMIGHVTPEARDGGPLAVVRDGDIVRIDTKAQTLDLAISTEEIAARLKAWSPPPEKAT-----KGTLAKYTKLVQSAHLGA 554          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|156401717|ref|XP_001639437.1| (predicted protein [Nematostella vectensis] >gi|156226565|gb|EDO47374.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 230.335 bits (586), Expect = 2.870e-69
Identity = 118/192 (61.46%), Postives = 145/192 (75.52%), Query Frame = 0
Query:   26 PTAPPDRHISILTGSLAPDSAVLKLSGKEVPY-FQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRRGALQKYTRLVQSAHVGAVTH 216
            P +P  RHI IL GSLAP+SAVLKLSGK++   F+GPA+ ++ E++A+  +M  +V AG VL+IRYEGP GSPGMPE LSPGA LVGAGLG  VALVTDGRFSGASHGIM+GHV+PEA   GP+ALVE+GDTVVID     L+L+++  VLAAR A+W +PP          G L+KY++ V SAH GAVTH
Sbjct:  372 PFSPAGRHILILKGSLAPESAVLKLSGKDITKAFRGPAVVFDGEESAYRAVMNNEVKAGDVLVIRYEGPSGSPGMPEMLSPGAVLVGAGLGTKVALVTDGRFSGASHGIMIGHVSPEAQRAGPIALVENGDTVVIDPTTCALDLEVNEDVLAARRARW-VPPVKKLP-----GLLKKYSKFVSSAHQGAVTH 557          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|1176093756|ref|XP_020617402.1| (uncharacterized protein LOC110055358 isoform X3 [Orbicella faveolata] >gi|1176093758|ref|XP_020617403.1| uncharacterized protein LOC110055358 isoform X3 [Orbicella faveolata])

HSP 1 Score: 228.794 bits (582), Expect = 3.312e-69
Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 0
Query:   28 APPDRHISILTGSLAPDSAVLKLSGKEVP-YFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRR--GALQKYTRLVQSAHVGAVTH 216
            AP  RHI IL G+LAP SAVLKLSGK++   F+GPA+ ++ E+ AF+ +M G++ AG VL+IRYEGP+GSPGMPE L P  ALVGAGLGK+VALVTDGRFSGASHGIM+GHV+PEA  GGP+ L+EDGD +VID +   L+++L+  VL+ R +KW  PP        RR  G L+KY+++V SAHVGAVT+
Sbjct:  310 APAGRHILILKGNLAPASAVLKLSGKDISGAFRGPAVIFDGEERAFQSVMNGKIKAGDVLVIRYEGPRGSPGMPEMLVPSGALVGAGLGKEVALVTDGRFSGASHGIMIGHVSPEAQVGGPIGLIEDGDIIVIDPKTATLHVELTDEVLSERKSKWQPPP--------RRLTGLLKKYSKVVSSAHVGAVTY 493          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|1005495301|ref|XP_015750263.1| (PREDICTED: dihydroxy-acid dehydratase 2-like isoform X1 [Acropora digitifera])

HSP 1 Score: 229.95 bits (585), Expect = 6.485e-69
Identity = 118/193 (61.14%), Postives = 144/193 (74.61%), Query Frame = 0
Query:   26 PTAPPDRHISILTGSLAPDSAVLKLSGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRR--GALQKYTRLVQSAHVGAVTH 216
            P AP  RHI IL G+LAP+SAVLKLSGK++  F+GPA+ ++ E+ AF+ I++G++ AG  L+IRYEGP+GSPGMPE LSP  ALVGAGLGK VALVTDGRFSGASHGIM+GHV+PEA  GGP+ L+ DGD VVID +   L+++LS   L  R  KW  PP        RR  G LQKYT+LV SAH GAVT+
Sbjct:  391 PLAPAGRHIVILKGNLAPESAVLKLSGKDIGPFRGPAVVFDGEEQAFQAIVSGKIKAGDALVIRYEGPRGSPGMPEMLSPSGALVGAGLGKSVALVTDGRFSGASHGIMIGHVSPEAQVGGPIGLLIDGDIVVIDTENGTLSVELSDEELRTRKTKW-QPP-------LRRLTGLLQKYTKLVSSAHEGAVTY 575          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|999982938|gb|KXJ22084.1| (Dihydroxy-acid dehydratase [Exaiptasia pallida])

HSP 1 Score: 227.639 bits (579), Expect = 6.870e-69
Identity = 118/188 (62.77%), Postives = 141/188 (75.00%), Query Frame = 0
Query:   32 RHISILTGSLAPDSAVLKLSGKE-VPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRR--GALQKYTRLVQSAHVGAVTH 216
            RHI IL GSLA DSAVLKLSGK+    F GPA+ ++ EQ A++ +M G++ AG VL+IRYEGP GSPGMPE LSPGA LVGAGLG  VALVTDGRFSGASHGIM+GHV+PEA +GGP+ALVEDGD + ID  +  LNL++SS VL AR A+W  P         R+  G LQKY+ +V SAH GAVT+
Sbjct:  310 RHILILKGSLATDSAVLKLSGKDATKSFCGPAMVFDGEQEAYKAVMNGKLKAGDVLVIRYEGPSGSPGMPEMLSPGAVLVGAGLGTSVALVTDGRFSGASHGIMIGHVSPEAQKGGPIALVEDGDMITIDPAKGALNLEVSSEVLEARKARWTAPD--------RKLPGLLQKYSNIVSSAHXGAVTY 489          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|1176093754|ref|XP_020617401.1| (uncharacterized protein LOC110055358 isoform X2 [Orbicella faveolata])

HSP 1 Score: 228.794 bits (582), Expect = 1.654e-68
Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 0
Query:   28 APPDRHISILTGSLAPDSAVLKLSGKEVP-YFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRR--GALQKYTRLVQSAHVGAVTH 216
            AP  RHI IL G+LAP SAVLKLSGK++   F+GPA+ ++ E+ AF+ +M G++ AG VL+IRYEGP+GSPGMPE L P  ALVGAGLGK+VALVTDGRFSGASHGIM+GHV+PEA  GGP+ L+EDGD +VID +   L+++L+  VL+ R +KW  PP        RR  G L+KY+++V SAHVGAVT+
Sbjct:  393 APAGRHILILKGNLAPASAVLKLSGKDISGAFRGPAVIFDGEERAFQSVMNGKIKAGDVLVIRYEGPRGSPGMPEMLVPSGALVGAGLGKEVALVTDGRFSGASHGIMIGHVSPEAQVGGPIGLIEDGDIIVIDPKTATLHVELTDEVLSERKSKWQPPP--------RRLTGLLKKYSKVVSSAHVGAVTY 576          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|1176093752|ref|XP_020617400.1| (uncharacterized protein LOC110055358 isoform X1 [Orbicella faveolata])

HSP 1 Score: 228.794 bits (582), Expect = 2.040e-68
Identity = 115/192 (59.90%), Postives = 147/192 (76.56%), Query Frame = 0
Query:   28 APPDRHISILTGSLAPDSAVLKLSGKEVP-YFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRR--GALQKYTRLVQSAHVGAVTH 216
            AP  RHI IL G+LAP SAVLKLSGK++   F+GPA+ ++ E+ AF+ +M G++ AG VL+IRYEGP+GSPGMPE L P  ALVGAGLGK+VALVTDGRFSGASHGIM+GHV+PEA  GGP+ L+EDGD +VID +   L+++L+  VL+ R +KW  PP        RR  G L+KY+++V SAHVGAVT+
Sbjct:  403 APAGRHILILKGNLAPASAVLKLSGKDISGAFRGPAVIFDGEERAFQSVMNGKIKAGDVLVIRYEGPRGSPGMPEMLVPSGALVGAGLGKEVALVTDGRFSGASHGIMIGHVSPEAQVGGPIGLIEDGDIIVIDPKTATLHVELTDEVLSERKSKWQPPP--------RRLTGLLKKYSKVVSSAHVGAVTY 586          
BLAST of EWM23449.1 vs. NCBI_GenBank
Match: gi|1005466972|ref|XP_015770443.1| (PREDICTED: dihydroxy-acid dehydratase 2-like [Acropora digitifera])

HSP 1 Score: 228.409 bits (581), Expect = 2.877e-68
Identity = 118/193 (61.14%), Postives = 144/193 (74.61%), Query Frame = 0
Query:   26 PTAPPDRHISILTGSLAPDSAVLKLSGKEVPYFQGPAICYNSEQAAFEGIMTGQVHAGHVLIIRYEGPKGSPGMPEQLSPGAALVGAGLGKDVALVTDGRFSGASHGIMVGHVAPEAAEGGPLALVEDGDTVVIDIQRRKLNLKLSSSVLAARHAKWCLPPTVAASFDCRR--GALQKYTRLVQSAHVGAVTH 216
            P AP  RHI IL G+LAP+SAVLKLSGK++  F+GPA+ ++ E+ AF+ I++G++  G  L+IRYEGP+GSPGMPE LSP  ALVGAGLGK VALVTDGRFSGASHGIM+GHV+PEA  GGP+ L+ DGD VVID +   L+++LS   L AR  KW  PP        RR  G LQKYT+LV SAH GAVT+
Sbjct:  391 PLAPAGRHIVILQGNLAPESAVLKLSGKDIGPFRGPAVVFDGEEQAFQAIVSGKIKPGDALVIRYEGPRGSPGMPEMLSPSGALVGAGLGKSVALVTDGRFSGASHGIMIGHVSPEAQVGGPIGLLIDGDIVVIDTENGTLSVELSDEELRARKTKW-QPP-------LRRLTGLLQKYTKLVSSAHEGAVTY 575          
The following BLAST results are available for this feature:
BLAST of EWM23449.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104486|gb|EWM23449.1|6.585e-155100.00dihydroxy-acid dehydratase [Nannochloropsis gadita... [more]
gi|1005495303|ref|XP_015750264.1|7.866e-7061.14PREDICTED: dihydroxy-acid dehydratase 2-like isofo... [more]
gi|922855909|gb|KOO24317.1|2.019e-6960.10dihydroxy-acid dehydratase [Chrysochromulina sp. C... [more]
gi|156401717|ref|XP_001639437.1|2.870e-6961.46predicted protein [Nematostella vectensis] >gi|156... [more]
gi|1176093756|ref|XP_020617402.1|3.312e-6959.90uncharacterized protein LOC110055358 isoform X3 [O... [more]
gi|1005495301|ref|XP_015750263.1|6.485e-6961.14PREDICTED: dihydroxy-acid dehydratase 2-like isofo... [more]
gi|999982938|gb|KXJ22084.1|6.870e-6962.77Dihydroxy-acid dehydratase [Exaiptasia pallida][more]
gi|1176093754|ref|XP_020617401.1|1.654e-6859.90uncharacterized protein LOC110055358 isoform X2 [O... [more]
gi|1176093752|ref|XP_020617400.1|2.040e-6859.90uncharacterized protein LOC110055358 isoform X1 [O... [more]
gi|1005466972|ref|XP_015770443.1|2.877e-6861.14PREDICTED: dihydroxy-acid dehydratase 2-like [Acro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7241rna7241Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications