rna7238, rna7238 (mRNA) Nannochloropsis gaditana

Overview
Namerna7238
Unique Namerna7238
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1294
Alignment locationCM002471.1:90791..92654 +

Link to JBrowse

Properties
Property NameValue
Productmethylmalonate-semialdehyde dehydrogenase
Orig transcript idgnl|cribi|Naga_100986g3.8461.mrna
Orig protein idgnl|cribi|Naga_100986g3.8461
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:90791..92654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100986g3gene7003Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7238rna7238-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23451.1cds7221Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7238 ID=rna7238|Name=rna7238|organism=Nannochloropsis gaditana|type=mRNA|length=1294bp
GCTTCATCCCACTCACGGCGTCGGGGCGAGCACAACCAAGACAACGTTTC
TCTGTATCTTAAGGCTCATTCTATGCCACCAGGAGGAGGTACTTTTGGTG
TCTGGCTCTCGATTTTCGTTTACCGTCGATCTCAATGCTTTGTGGACTGC
CCTTCCTCAACCCGTCTTGCCCCTCTCGCAACAGATTCAAGCAGGGCTTT
TCCACCGCCAGCGCTCAAAATGTCTGAGCGCACCTCTCTCCTGAAGTCAT
CCGCGGAGCCCAAGCCTGTCTACGTGGTCCCGCGAACGAACAGCATCAGC
CGGGTGACCGTGGAAAATGTTAAGGCGTCTCCCCATTACGGGCGTTCGCA
GTTTCCCAGCAGCACGGGGTTCTTGGAACGACTCTGGCCATTCGCTTACC
AGGATACGACGCGCTACGGCAAAATCCGTAAAGCACCTGTCAAAGTAGAG
CCCAAGGTGTTCTTTGCCAACGAGCGTACCTTCCTCGCCTGGTTGAACAT
GTCAGTGACCCTGGCGTCCATCTCCGTCGCCATCCTGGCCTTTGCGGACC
ACAACGAGTTTTCGCAGATCTACGGCTTTACCGTGCTCCCTGTGGCGGTG
GCCTTTGTCATCTATGCGTTGACCACCTACACACGTCGCTCCTTCATGCT
CCGCAACCGCATGCCTGGGCCCTACGAAGACCGCGTGGGGCCCGTTGTCC
TCACCCTCCTTCTCTGCCTCTCCATCACCGTGAACTTCATCCTCAAACTC
ATCGACATCCTCGGCGATAAGGAGGCTGCTGCCCCCGCGACACCGCTCTC
CATGAAGGGGGGCTTGGGTAGTGGGATTAAGTCCGGCCCCGTGGTCACCC
CGGCTCCATTGACAGGGCCTTGACTTGAAAGGGGTTTGGGGTAGGTAGGG
GCCCGTCAAATGTCCGACGCTTTTGGCGTGAAGACTAAAGGCTTTTGCGG
TGTCGGACGGTAGTGTTAAAGCACAAGTGGTTTGGAGAGTACTGGATAGC
GGCTCCAATCGTTGTGACTGTCTGGAGAGGTAGTAATGTTGAGTCGGGAC
TGGAAGTGGACAAAATACATATTGATATGAAAGATGGACAAAGCGGTAAA
CAGTGGAAACATGCAAAGGAAAGCATCGGCCTAGGTTTGGAAATGGCTGC
TTTTATTAATGTGATGCACTTCGTTCCCTCCTGTACTCTAAATCTCGAGA
TTTTCGACGTCGTCTTACTTTGACCTACGTCTCGCGGCAACCTCATTTTT
CGTTCGAATTGAATGGCGGTTTCGTGATGAGTAAATAACGGTGC
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protein sequence of rna7238

>rna7238-protein ID=rna7238-protein|Name=rna7238|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MAARNVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAA
ARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFY
TQTKTITSNWQFHAASAQAASSMPTLK
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mRNA from alignment at CM002471.1:90791..92654+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7238 ID=rna7238|Name=rna7238|organism=Nannochloropsis gaditana|type=mRNA|length=1864bp|location=Sequence derived from alignment at CM002471.1:90791..92654+ (Nannochloropsis gaditana)
GAAAGTGAGACGAAGGCGGGATCGGAAGCGTCGCACCTTTGTCATTTATA
CACCTCTTTAGTTATCAGCACttgcgtccccccccccccccttcttccct
ccctccttcccttccttgcccaccCCAGGCTATCCAAACGGGAACTTCCT
gggcccgtccctcctcctcttttcctccgccgctaTGGCGGCTCGCAACG
TGGCCTACAGGGAAGAGATCTTCGCCCCGGTGCTGAACGTGGTCTGTGTG
GacagcttggaggaggcgatccAGTTCGTCAATGCCAGGTCGGtcctttc
gcgccaaatttgTACATCCCTTCCCCGTTGGAGGCTGCCTTTTTTGTCCT
TTTGTCGGTGGGGAAAATCATACTCCGTGCGTGTTCTTTGGGTACGGATT
TAATCGTGTTGCGGGACCTGGCGTCGTGCCATATCATCCCTTTCGGCTCG
TCCAGACGTCCTGCTTCTGCTCGCACGGCCTCGAGTCCGTACAAAGAGCT
TGTGTGCCTGTCCGTGTCGAACGAGGCTTGGAATTTCGGATGGctcatcc
ttctccttcccccccttggtTCCCCTCCAcgtgcttccctctctcgggAC
CTCTCCCCACAGTCCCTATGGGAATGGCACCGCGATTTTCACCTCTTCGG
GGGCAGCGGCGCGAAAATATCAGAAGGAAATCGACGTCGGACAGGTCCGT
GGGCCCGGCTTGGcccgaaagaggaggggagcacgCCGAAGCttcgggaa
ggggagaggggccgcAAGCCACCAAGATGCGGAAGGCTGGAGGTCCTTTC
CACgggctgccctccctcccgctcccactGCGTCCTTCTGCAAACTAATA
CCAATATTTAAAACCGTAtctacctcttcttccctgcctcgctcctgtcc
tcccttttttttccatccTGTCCCTTCTACCCAGGTCGGGATCAACGTAC
CTATCcctgttcctcttcctttcttctctttcaccgGCTCCCGGGGCTCT
TTGCGGGGAGACTTGCACTTTTACGGTGCGTGGATTTGGGAAAtgtgaga
gggaaagagggtatCGAAGGAGCTGGGAGGAAACGAAATAGGctcaagga
aggaaagcgagagaTGGCTAGGGGGTCGAAGGAGGTATAGGGAGGCTGTG
ATAAGAAAtgacaggaaagaaagcgccTGAACTCTGTAAGAGAGTGTGCA
CACCGTTAGGTATTGTCAAGCggttgccctccctctcaaccCCGCAAAGT
CGTGCCTTATACCCCCTTTTGGATCGCAGCCTCGATGCTGCGGTGTGGTC
AAATTTTTGGATATATCAACCATTGTGACCTGGAGACCGGATTCTAAGCG
GCAAGAGCACTTCGACTGACTTCTCCCCAGCCGGCGGCCATTTCTCACCC
CCCCAACCCACCCCCATCGTCTTTTATCCCATTGCCCTTTCTGTGTTGTC
ACGCAGGAAAACAGGGCGTGGCGTTCTACACGCAAACTAAGACTATCACG
AGCAATTGGCAGTTCCATGCGGCGAGCGCCCAGGCTGCCTCTAGCATGCC
TACTTTGAAatagggagagaaggggaagaggaaggaggaggggagggaga
agggggggagggaggaggaggggagggagaaggggggagggcatcgCCTG
TTCaagaggagcggagggggggggaaggaggggagaggaggccatAGGAT
TGGGCTGTGGAGTTGTTGTACATAGGAcgggtggtggggaaggaacgggg
gggaagaaacgaTAGGAAggctgttagggttagggtaagGGTCCATCTGC
GTGGAGCGAGTGAATGGGTGAACAAGTCGACAAAAAGGATAAATGGAAGT
AATCCCCGATGGGG
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Coding sequence (CDS) from alignment at CM002471.1:90791..92654+

>rna7238 ID=rna7238|Name=rna7238|organism=Nannochloropsis gaditana|type=CDS|length=1536bp|location=Sequence derived from alignment at CM002471.1:90791..92654+ (Nannochloropsis gaditana)
aTGGCGGCTCGCAACGTGGCCTACAGGGAAGAGATCTTCGCCCCGGTGCT
GAACGTGGTCTGTGTGGacagcttggaggaggcgatccAGTTCGTCAATG
CCAGTCCCTATGGGAATGGCACCGCGATTTTCACCTCTTCGGGGGCAGCG
GCGCGAAAATATCAGAAGGAAATCGACGTCGGACAGGTCGGGATCAACGT
ACCTATCcctgttcctcttcctttcttctctttcaccgGCTCCCGGGGCT
CTTTGCGGGGAGACTTGCACTTTTACGGAAAACAGGGCGTGGCGTTCTAC
ACGCAAACTAAGACTATCACGAGCAATTGGCAGTTCCATGCGGCGAGCGC
CCAGGCTGCCTCTAGCATGCCTACTTTGAAatagaTGGCGGCTCGCAACG
TGGCCTACAGGGAAGAGATCTTCGCCCCGGTGCTGAACGTGGTCTGTGTG
GacagcttggaggaggcgatccAGTTCGTCAATGCCAGTCCCTATGGGAA
TGGCACCGCGATTTTCACCTCTTCGGGGGCAGCGGCGCGAAAATATCAGA
AGGAAATCGACGTCGGACAGGTCGGGATCAACGTACCTATCcctgttcct
cttcctttcttctctttcaccgGCTCCCGGGGCTCTTTGCGGGGAGACTT
GCACTTTTACGGAAAACAGGGCGTGGCGTTCTACACGCAAACTAAGACTA
TCACGAGCAATTGGCAGTTCCATGCGGCGAGCGCCCAGGCTGCCTCTAGC
ATGCCTACTTTGAAatagaTGGCGGCTCGCAACGTGGCCTACAGGGAAGA
GATCTTCGCCCCGGTGCTGAACGTGGTCTGTGTGGacagcttggaggagg
cgatccAGTTCGTCAATGCCAGTCCCTATGGGAATGGCACCGCGATTTTC
ACCTCTTCGGGGGCAGCGGCGCGAAAATATCAGAAGGAAATCGACGTCGG
ACAGGTCGGGATCAACGTACCTATCcctgttcctcttcctttcttctctt
tcaccgGCTCCCGGGGCTCTTTGCGGGGAGACTTGCACTTTTACGGAAAA
CAGGGCGTGGCGTTCTACACGCAAACTAAGACTATCACGAGCAATTGGCA
GTTCCATGCGGCGAGCGCCCAGGCTGCCTCTAGCATGCCTACTTTGAAat
agaTGGCGGCTCGCAACGTGGCCTACAGGGAAGAGATCTTCGCCCCGGTG
CTGAACGTGGTCTGTGTGGacagcttggaggaggcgatccAGTTCGTCAA
TGCCAGTCCCTATGGGAATGGCACCGCGATTTTCACCTCTTCGGGGGCAG
CGGCGCGAAAATATCAGAAGGAAATCGACGTCGGACAGGTCGGGATCAAC
GTACCTATCcctgttcctcttcctttcttctctttcaccgGCTCCCGGGG
CTCTTTGCGGGGAGACTTGCACTTTTACGGAAAACAGGGCGTGGCGTTCT
ACACGCAAACTAAGACTATCACGAGCAATTGGCAGTTCCATGCGGCGAGC
GCCCAGGCTGCCTCTAGCATGCCTACTTTGAAatag
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Synonyms
Publications