EWM23451.1, cds7221 (CDS) Nannochloropsis gaditana

Overview
NameEWM23451.1
Unique Namecds7221
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:90975..91078 +
Alignment locationCM002471.1:91403..91484 +
Alignment locationCM002471.1:91725..91815 +
Alignment locationCM002471.1:92247..92353 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23451.1
Productmethylmalonate-semialdehyde dehydrogenase
Orig transcript idgnl|cribi|Naga_100986g3.8461.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:90975..91078 +
CM002471.1supercontigCM002471.1:91403..91484 +
CM002471.1supercontigCM002471.1:91725..91815 +
CM002471.1supercontigCM002471.1:92247..92353 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009056catabolic process
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0004491methylmalonate-semialdehyde dehydrogenase (acylating) activity
GO:0016620oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR016161Ald_DH/histidinol_DH
IPR010061MeMal-semiAld_DH
IPR016163Ald_DH_C
IPR015590Aldehyde_DH_dom
Homology
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|585104493|gb|EWM23451.1| (methylmalonate-semialdehyde dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 263.462 bits (672), Expect = 2.974e-89
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 MAARNVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTLK 127
            MAARNVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTLK
Sbjct:    1 MAARNVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTLK 127          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|813198224|ref|XP_012208695.1| (hypothetical protein SPRG_21223 [Saprolegnia parasitica CBS 223.65] >gi|641526241|gb|KDO20623.1| hypothetical protein SPRG_21223 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 182.185 bits (461), Expect = 1.750e-55
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 0
Query:    5 NVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTL 126
            N +Y EE+F PVL    V++L++AI+ +NA+PYGNGT+IFT SG AARK+Q EIDVGQVGINVPIPVPLPFFSFTGSR S+RGDLHFYGKQGV FYTQTKTIT+ W+F     Q  + MPTL
Sbjct:  119 NPSYVEELFGPVLVCNSVETLDDAIELINANPYGNGTSIFTQSGPAARKFQHEIDVGQVGINVPIPVPLPFFSFTGSRSSIRGDLHFYGKQGVMFYTQTKTITAQWEF-GKKTQYGTVMPTL 239          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|1173947897|gb|OQR96067.1| (methylmalonate-semialdehyde dehydrogenase, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 188.348 bits (477), Expect = 5.558e-55
Identity = 87/123 (70.73%), Postives = 102/123 (82.93%), Query Frame = 0
Query:    4 RNVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTL 126
            +N +Y EE+F PVL    VD+L+EAI+ +NA+PYGNGT+IFT SG AARK+Q EIDVGQVGINVPIPVPLPFFSFTGSR S+RGDLHFYGKQGV FYTQTKTIT+ W+F     Q  ++MPTL
Sbjct:  397 KNPSYTEELFGPVLVCNSVDTLDEAIELINANPYGNGTSIFTQSGPAARKFQHEIDVGQVGINVPIPVPLPFFSFTGSRSSIRGDLHFYGKQGVMFYTQTKTITAQWEF-GKKTQYGTAMPTL 518          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|1000196697|gb|KXJ71091.1| (hypothetical protein RP20_CCG021540 [Aedes albopictus])

HSP 1 Score: 176.407 bits (446), Expect = 6.563e-54
Identity = 81/122 (66.39%), Postives = 98/122 (80.33%), Query Frame = 0
Query:    7 AYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNW-QFHAASAQAASSMPTLK 127
             Y EEIF PVL  + VD+L+EA++ VN++PYGNGTAIFT++GA ARK+  EIDVGQVG+NVPIPVPLP FSFTGSRGS  GD HFYGKQGV FYTQTKT+T  W +   +  +AA +MPT+K
Sbjct:   67 CYTEEIFGPVLVCLTVDTLDEAVEMVNSNPYGNGTAIFTTNGATARKFVNEIDVGQVGVNVPIPVPLPMFSFTGSRGSFMGDCHFYGKQGVKFYTQTKTVTQLWREGDVSHTKAAVAMPTMK 188          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|1173937047|gb|OQR87910.1| (methylmalonate-semialdehyde dehydrogenase, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 185.267 bits (469), Expect = 9.331e-54
Identity = 85/123 (69.11%), Postives = 101/123 (82.11%), Query Frame = 0
Query:    4 RNVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTL 126
            +N +Y EE+F PVL    VD+L++AI+ +NA+PYGNGT+IFT SG AARK+Q EIDVGQVGINVPIPVPLPFFSFTGSR S+RGDLHFYGKQGV FYTQTKT+T+ W+F     Q  + MPTL
Sbjct:  397 KNPSYVEELFGPVLVCSSVDTLDDAIELINANPYGNGTSIFTQSGPAARKFQHEIDVGQVGINVPIPVPLPFFSFTGSRASIRGDLHFYGKQGVQFYTQTKTVTAQWEF-GKKTQYGTVMPTL 518          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|669149806|ref|XP_008610465.1| (methylmalonate-semialdehyde dehydrogenase (acylating) [Saprolegnia diclina VS20] >gi|530738117|gb|EQC36359.1| methylmalonate-semialdehyde dehydrogenase (acylating) [Saprolegnia diclina VS20])

HSP 1 Score: 183.726 bits (465), Expect = 3.211e-53
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 0
Query:    5 NVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTL 126
            N +Y EE+F PVL    V++L+EAI+ +NA+PYGNGT+IFT SG AARK+Q EIDVGQVGINVPIPVPLPFFSFTGSR S+RGDLHFYGKQGV FYTQTKTIT+ W+F     Q  + MPTL
Sbjct:  399 NPSYVEELFGPVLVCNSVETLDEAIELINANPYGNGTSIFTQSGPAARKFQHEIDVGQVGINVPIPVPLPFFSFTGSRSSIRGDLHFYGKQGVMFYTQTKTITAQWEF-GKKTQYGTVMPTL 519          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|673031048|ref|XP_008869485.1| (methylmalonate-semialdehyde dehydrogenase (acylating) [Aphanomyces invadans] >gi|574474636|gb|ETW01637.1| methylmalonate-semialdehyde dehydrogenase (acylating) [Aphanomyces invadans])

HSP 1 Score: 183.726 bits (465), Expect = 3.752e-53
Identity = 85/124 (68.55%), Postives = 101/124 (81.45%), Query Frame = 0
Query:    3 ARNVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTL 126
            A N AY EE+F PVL    VDSL+EA++ +N +PYGNGT+IFT SGAAARK+Q E+D GQVGINVPIPVPLPFFSFTGSR S+RGD+HFYGKQGV F+TQTKTIT+ W+F  +  Q  + MPTL
Sbjct:  396 ATNPAYTEELFGPVLVCTSVDSLDEALKVINTNPYGNGTSIFTQSGAAARKFQHEVDAGQVGINVPIPVPLPFFSFTGSRHSIRGDIHFYGKQGVNFFTQTKTITAQWEF-GSKTQYGTVMPTL 518          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|698820511|ref|XP_009843284.1| (methylmalonate-semialdehyde dehydrogenase (acylating) [Aphanomyces astaci] >gi|574101735|gb|ETV67296.1| methylmalonate-semialdehyde dehydrogenase (acylating) [Aphanomyces astaci])

HSP 1 Score: 183.341 bits (464), Expect = 4.836e-53
Identity = 84/122 (68.85%), Postives = 101/122 (82.79%), Query Frame = 0
Query:    5 NVAYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQAASSMPTL 126
            N AY+EE+F PVL    VD+L+EA+  VN++PYGNGT+IFT SGAAARK+Q E+D GQVGINVPIPVPLPFFSFTGSR S+RGD+HFYGKQGV F+TQTKTIT+ W+F  +  Q  + MPTL
Sbjct:  398 NPAYKEELFGPVLVCTSVDTLDEALNVVNSNPYGNGTSIFTQSGAAARKFQHEVDAGQVGINVPIPVPLPFFSFTGSRHSIRGDIHFYGKQGVNFFTQTKTITAQWEF-GSKTQYGTVMPTL 518          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|617464785|ref|XP_007573288.1| (PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like [Poecilia formosa])

HSP 1 Score: 171.785 bits (434), Expect = 6.272e-53
Identity = 78/121 (64.46%), Postives = 97/121 (80.17%), Query Frame = 0
Query:    7 AYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNWQFHAASAQA-ASSMPTL 126
             Y+EEIF PVL ++  DSL+EAI  +N +PYGNGTAIFT++GA ARKY  E+DVGQVG+NVPIPVPLP FSFTGSRGS RGD +FYGKQG+ F+TQ KT+TS W+   A+  + A +MPT+
Sbjct:    3 CYKEEIFGPVLIILEADSLDEAISLINRNPYGNGTAIFTTNGATARKYTHEVDVGQVGVNVPIPVPLPMFSFTGSRGSFRGDTNFYGKQGIQFFTQIKTVTSQWKAEDATVTSPAVTMPTM 123          
BLAST of EWM23451.1 vs. NCBI_GenBank
Match: gi|40215933|gb|AAL39429.2| (GM14134p, partial [Drosophila melanogaster])

HSP 1 Score: 173.711 bits (439), Expect = 6.577e-53
Identity = 80/122 (65.57%), Postives = 97/122 (79.51%), Query Frame = 0
Query:    7 AYREEIFAPVLNVVCVDSLEEAIQFVNASPYGNGTAIFTSSGAAARKYQKEIDVGQVGINVPIPVPLPFFSFTGSRGSLRGDLHFYGKQGVAFYTQTKTITSNW-QFHAASAQAASSMPTLK 127
             Y EEIF PVL ++  D+L++AI  VNA+PYGNGTA+FT++GAAARK+  EID GQVG+NVPIPVPLP FSFTG+RGS RGD HFYGKQG+ FYTQTKT+T  W +      QAA +MPT+K
Sbjct:   68 CYTEEIFGPVLVILKADTLDDAIGIVNANPYGNGTAVFTTNGAAARKFVNEIDAGQVGVNVPIPVPLPMFSFTGTRGSFRGDHHFYGKQGIKFYTQTKTVTQLWRKTDVTHTQAAVAMPTMK 189          
The following BLAST results are available for this feature:
BLAST of EWM23451.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104493|gb|EWM23451.1|2.974e-89100.00methylmalonate-semialdehyde dehydrogenase [Nannoch... [more]
gi|813198224|ref|XP_012208695.1|1.750e-5569.67hypothetical protein SPRG_21223 [Saprolegnia paras... [more]
gi|1173947897|gb|OQR96067.1|5.558e-5570.73methylmalonate-semialdehyde dehydrogenase, mitocho... [more]
gi|1000196697|gb|KXJ71091.1|6.563e-5466.39hypothetical protein RP20_CCG021540 [Aedes albopic... [more]
gi|1173937047|gb|OQR87910.1|9.331e-5469.11methylmalonate-semialdehyde dehydrogenase, mitocho... [more]
gi|669149806|ref|XP_008610465.1|3.211e-5370.49methylmalonate-semialdehyde dehydrogenase (acylati... [more]
gi|673031048|ref|XP_008869485.1|3.752e-5368.55methylmalonate-semialdehyde dehydrogenase (acylati... [more]
gi|698820511|ref|XP_009843284.1|4.836e-5368.85methylmalonate-semialdehyde dehydrogenase (acylati... [more]
gi|617464785|ref|XP_007573288.1|6.272e-5364.46PREDICTED: methylmalonate-semialdehyde dehydrogena... [more]
gi|40215933|gb|AAL39429.2|6.577e-5365.57GM14134p, partial [Drosophila melanogaster][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7238rna7238Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications