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Properties
| Property Name | Value |
|---|
| Product | p-type atpase |
| Orig transcript id | gnl|cribi|Naga_100415g5.10371.mrna |
| Orig protein id | gnl|cribi|Naga_100415g5.10371 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002471.1 | supercontig | CM002471.1:78532..80796 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7235 ID=rna7235|Name=rna7235|organism=Nannochloropsis gaditana|type=mRNA|length=1710bp
GCAGGCCATCCACCGGCACACCAAGGGCCAGGGCCTCCCCATCCCCCCTG
CCTCATCCTTCGAGATCCGACCCGGTCTGGGAGTGACAGCCCTGGTGGAG
GGAATGGGCCGCGTCGCGGTGGGGAACACTCGCTTTCTGGAAGAGGTGGA
GGGAGTCGCGTTCTCCCCCACGGCGCCTGCTTCCTTCCCCACCCGTCCCT
CCCCCCCGGGGAATGAGACGAGGGGAGGGAGGGGTGGGGGCAGGAAGCCT
CTGACGGAGATCCGGAAGGCGTTGGAAGCGCAGGGCAAGACTGTGGTCTT
TGTGGCGGCGGAACGGCGGCTTCAAGGACTGCTGGCGGTGTCCGATAAGC
CCCGACCCGATGCGGCTCGCACCGTCGCGGCATTGCACCGCATGGGGATC
CAGGTCTGGATGTTGACGGGCGATTCGCGGGCGGCGGCAGAGGCGGTGGC
GCACAGCATCGGCATCAAGCACGTGCAGGCGGGGACCCTGCCCGGGCAGA
AGGCCAAGAAAATTCAGGCACTGCAGGCTCGAGGCCATCGAGTCTGTATG
CTGGGAGACGGGATCAACGACTCGCCGGCATTGGCCCAGGCGGACGTGGG
GGTGGCGATTGGAACCGGGGCACAGGTGGCCTGTGAGGCTGCGGACCTCA
TCCTCCTCCACAACTCCCTCCCTGACCTGGTGACCGCCTTGCACCTGGCG
CGGACGGTCTTCCGTCGCATCCAGCTCAACATGCTGTGGGCGCTCGGTTA
CAATTTAATCGGCATTCCTTTCGCGGCCGGTGCCTTTTTGCCCATTTTGG
GCTGGCGCCTTCCTCCGGGCTACTCGGGTGCGTGCTCGTCGTTGCCGGCT
CGTGCGAGTCGCTTGCCTCGTCTTGCCAGGGACGTGATGTGTTGGCTCAC
TCTCTCCACTCTCCCCCCCCCCTTCGGTCTCTCGGTCTCTCCCCTCCCCC
CCCCCCTCCAAAAAAGGTCTGGCCATGACTATGTCCTCCCTCTCTGTCGT
CATCTCCTCCTTGGCCCTCCGCTTCTACCAACGGCCCGACTTGGACAAAG
TTGGCTCGATTTTTGCCCGGCATGGGCGAGAAAGACGGGAGAGGAGGGAA
AGGACAGCCTCGCAGCTGCAGCCATTGGTGCTGGGGGAAGTGGAGCGGGA
GGAAGACGAGGAAGAGGGCAGGAGGAGAGGAATGAGCCGAGGGCGTCTGG
ATTCAGACGATTCTATGGGGTCTTCCATCTCGCTGGCGTCGGAGCGTGCT
CGCTCTCACACCATGAACACAGTCACATCCCACCTATCAAGAGCTTCTCG
GCTGTGGCAACGCATGCGAGGTTACATGCATTTGGACGGTGAACAAGGAT
TTGAGAGTGTTTGGGACAGGAACAGAGGAATGCTGGCATCTTTGTCGCCT
CTGGGTGGGATTAGAGGGCCGGGAAGGGGGAACACAGGGAGAAGCATAGA
TATGGTGCGCCTGTCCCGAGAGTCCGATGGAGGACATCGCGAAACAGTAT
AAGGATTTAATTTTCGGGTAGAAGAGGGAAGAAATGTAGCAAATGTCATA
TACTCAAAGCATAAAACATGCCCCTTGCTGACAAAGATTTGAAATAAAAA
ATCGACTTGAACTTTGCCGGATTCGACCTTTAAGGACAGTTGTAGGATTG
TCCTTTCTTCCCGTTGTTATGACAGTAAGCGAAACAAGCCGCGGACAGGA
CAGACTGGTG back to topprotein sequence of rna7235 >rna7235-protein ID=rna7235-protein|Name=rna7235|organism=Nannochloropsis gaditana|type=polypeptide|length=272bp
MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHR
VCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTAL
HLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSS
LPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLP
LCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGS
GAGGRRGRGQEERNEPRASGFR back to topmRNA from alignment at CM002471.1:78532..80796+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7235 ID=rna7235|Name=rna7235|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp|location=Sequence derived from alignment at CM002471.1:78532..80796+ (Nannochloropsis gaditana)
ACCTTTTCCGGTCCTCggaccctcgccctccctccgccccctccctcccc
ccctcaggCTTCAAGGACTGCTGGCGGTGTCCGATAAGCCCCGACCCGAT
GCGGCTCGCACCGTCGCGGCATTGCACCGCATGGGGAtccaggtagggag
ggagggagggagggagggagggaaggcgggcatcTTCGACAGGGAGACGT
GTCCTCGTAGGGATATCATGCGTCAAGGAAGCTTCACCACCCACGAcaac
acctccctccctcctctctccctccctccctccctccggccctccctccc
tccctaggTCTGGATGTTGACGGGCGATTCgcgggcggcggcagaggcgG
TGGCGCACAGCATCGGCATCAAGCACGTGCAGGCGGGGACCCTGCCCGGG
CAGAAGGCCAAGAAAATTCAGGCACtgcaggtgggaaggagggagggagg
gagggagggagggagggagggagggagggagggagggagaaaggtgGGGC
GGACcgggagagcaaggggaaTGTCAGGGGGCTTGGAGCAGGAAGCATGG
AGGGATTCCCCCATTTCactcgtttccttcctccccctccttctttccct
ccccttctcttttcagGCTCGAGGCCATCGAGTCTGTATGCTGGGAGACG
GGATCAACGACTCGCCGGCATTGGCCCAGGCGGACGTGGGGGTGGCGATT
GGAACCGGGGCAcaggtagggggggaggacgggggggaggacgggggagg
gcgtgttTGAGCCGATGGTAGCTACCAAGCATTCCACGCACAAAATGGTC
GAGAGGAATGCAACTGAATTGTAAACGAATTTCGGCTCCTTTCCAGTCAG
AGAGTATAGAGTAGACTGAGGATAGGGATAGGGTAGCACGACCATCCCCA
GCCAACCTGACCCAAGCTCCCTCTattccctccgtcccctccccccctcc
ccccaggtGGCCTGTGAGGCTGCGgacctcatcctcctccacaactccct
ccctgacctgGTGACCGCCTTGCACCTGGCGCGGACGGTCTTCCGTCGCA
TCCAGCTCAACATGCTGTGGGCGCTCGGTTACAATTTAATCGGCATTCCT
TTCGCGGCCGGTGCCTTTTTGCCCATTTTGGGCTGGCGCCTTCCTCCGGG
CTACTCGGGTGCGTGCTCGTCGTTGCCGGCTCGTGCGAGTCGCTTGCCTC
GTCTTGCCAGGGACGTGATGTGTTGGCTCACTCTCTccactctccccccc
cccttcggtCTCTCggtctctcccctccccccccccctccaaaaAAGGTC
TGGCCATGACtatgtcctccctctctgtcgtcatctcctccttggccctc
cGCTTCTACCAACGGCCCGACTTGGACAAAGTTGGCTCGATTTTTGCCCG
GCATGGGCGAGAAagacgggagaggagggaaaggacagCCTCGCAGCTGC
AGCCATTGGTGCTGGGGGAagtggagcgggaggaagacgaggaagagggc
aggaggagaggaatgagCCGAGGGCGTCTGGATTCAGGTAAGGATGCGGA
CTATCCTTTCTCGCAGGACTGTGTCTCAGTTGAGATTGTTTCGTGGGGTC
TCAACGGGTGTCGGGACACTGCAAATTGTCATGTCGGGACGTTCTGGAGG
GACTTGTTGAGCTTGCGTAAGGTCTGCCATACAGCACTGTCTTTCACGGC
TGTGAATTCGCCCCTGCAAATAAGCCTTTGCTCAAATGCGACATATTTTA
AATCATGACAGACGATTCTATGGGGTCTTCCATCTCGCTGGCGTCGGAGC
GTGCTCGCTCTCACACCATGAACACAGTCACATCCCACCTATCAAGAGCT
TCTCGGCTGTGGCAACGCATGCGAGGTTACATGCATTTGGACGGTGAACA
AGGATTTGAGAGTGTTTGGGACAGGAACAGAGGAATGCTGGCATCTTTGT
CGCCTCTGGGTGGGATTAGAgggccgggaagggggaacaCAGGGAGAAGC
ATAGATATGGTGCGCCTGTCCCGAGAGTCCGATGGAGGACATCGCGAAAC
AGTATAAGGATTTAATTTTCGggtagaagagggaagaaatgtAGCAAATG
TCATATACTCAAAGCATAAAACATGCCCCTTGCTGACAAAGATTTGAAAT
AAAAAATCGACTTGAACTTTGCCGGATTCGACCTTTAAGGACAGTTGTAG
GAttgtcctttcttcccgttGTTATGACAGTAAGCGAAACAAGCCGCGGA
CAGGACAGACTGGTG back to topCoding sequence (CDS) from alignment at CM002471.1:78532..80796+ >rna7235 ID=rna7235|Name=rna7235|organism=Nannochloropsis gaditana|type=CDS|length=3276bp|location=Sequence derived from alignment at CM002471.1:78532..80796+ (Nannochloropsis gaditana)
ATGGGGAtccaggTCTGGATGTTGACGGGCGATTCgcgggcggcggcaga
ggcgGTGGCGCACAGCATCGGCATCAAGCACGTGCAGGCGGGGACCCTGC
CCGGGCAGAAGGCCAAGAAAATTCAGGCACtgcagGCTCGAGGCCATCGA
GTCTGTATGCTGGGAGACGGGATCAACGACTCGCCGGCATTGGCCCAGGC
GGACGTGGGGGTGGCGATTGGAACCGGGGCAcaggtGGCCTGTGAGGCTG
CGgacctcatcctcctccacaactccctccctgacctgGTGACCGCCTTG
CACCTGGCGCGGACGGTCTTCCGTCGCATCCAGCTCAACATGCTGTGGGC
GCTCGGTTACAATTTAATCGGCATTCCTTTCGCGGCCGGTGCCTTTTTGC
CCATTTTGGGCTGGCGCCTTCCTCCGGGCTACTCGGGTGCGTGCTCGTCG
TTGCCGGCTCGTGCGAGTCGCTTGCCTCGTCTTGCCAGGGACGTGATGTG
TTGGCTCACTCTCTccactctccccccccccttcggtCTCTCggtctctc
ccctccccccccccctccaaaaAAGGTCTGGCCATGACtatgtcctccct
ctctgtcgtcatctcctccttggccctccGCTTCTACCAACGGCCCGACT
TGGACAAAGTTGGCTCGATTTTTGCCCGGCATGGGCGAGAAagacgggag
aggagggaaaggacagCCTCGCAGCTGCAGCCATTGGTGCTGGGGGAagt
ggagcgggaggaagacgaggaagagggcaggaggagaggaatgagCCGAG
GGCGTCTGGATTCAGGTAAATGGGGAtccaggTCTGGATGTTGACGGGCG
ATTCgcgggcggcggcagaggcgGTGGCGCACAGCATCGGCATCAAGCAC
GTGCAGGCGGGGACCCTGCCCGGGCAGAAGGCCAAGAAAATTCAGGCACt
gcagGCTCGAGGCCATCGAGTCTGTATGCTGGGAGACGGGATCAACGACT
CGCCGGCATTGGCCCAGGCGGACGTGGGGGTGGCGATTGGAACCGGGGCA
caggtGGCCTGTGAGGCTGCGgacctcatcctcctccacaactccctccc
tgacctgGTGACCGCCTTGCACCTGGCGCGGACGGTCTTCCGTCGCATCC
AGCTCAACATGCTGTGGGCGCTCGGTTACAATTTAATCGGCATTCCTTTC
GCGGCCGGTGCCTTTTTGCCCATTTTGGGCTGGCGCCTTCCTCCGGGCTA
CTCGGGTGCGTGCTCGTCGTTGCCGGCTCGTGCGAGTCGCTTGCCTCGTC
TTGCCAGGGACGTGATGTGTTGGCTCACTCTCTccactctcccccccccc
ttcggtCTCTCggtctctcccctccccccccccctccaaaaAAGGTCTGG
CCATGACtatgtcctccctctctgtcgtcatctcctccttggccctccGC
TTCTACCAACGGCCCGACTTGGACAAAGTTGGCTCGATTTTTGCCCGGCA
TGGGCGAGAAagacgggagaggagggaaaggacagCCTCGCAGCTGCAGC
CATTGGTGCTGGGGGAagtggagcgggaggaagacgaggaagagggcagg
aggagaggaatgagCCGAGGGCGTCTGGATTCAGGTAAATGGGGAtccag
gTCTGGATGTTGACGGGCGATTCgcgggcggcggcagaggcgGTGGCGCA
CAGCATCGGCATCAAGCACGTGCAGGCGGGGACCCTGCCCGGGCAGAAGG
CCAAGAAAATTCAGGCACtgcagGCTCGAGGCCATCGAGTCTGTATGCTG
GGAGACGGGATCAACGACTCGCCGGCATTGGCCCAGGCGGACGTGGGGGT
GGCGATTGGAACCGGGGCAcaggtGGCCTGTGAGGCTGCGgacctcatcc
tcctccacaactccctccctgacctgGTGACCGCCTTGCACCTGGCGCGG
ACGGTCTTCCGTCGCATCCAGCTCAACATGCTGTGGGCGCTCGGTTACAA
TTTAATCGGCATTCCTTTCGCGGCCGGTGCCTTTTTGCCCATTTTGGGCT
GGCGCCTTCCTCCGGGCTACTCGGGTGCGTGCTCGTCGTTGCCGGCTCGT
GCGAGTCGCTTGCCTCGTCTTGCCAGGGACGTGATGTGTTGGCTCACTCT
CTccactctccccccccccttcggtCTCTCggtctctcccctcccccccc
ccctccaaaaAAGGTCTGGCCATGACtatgtcctccctctctgtcgtcat
ctcctccttggccctccGCTTCTACCAACGGCCCGACTTGGACAAAGTTG
GCTCGATTTTTGCCCGGCATGGGCGAGAAagacgggagaggagggaaagg
acagCCTCGCAGCTGCAGCCATTGGTGCTGGGGGAagtggagcgggagga
agacgaggaagagggcaggaggagaggaatgagCCGAGGGCGTCTGGATT
CAGGTAAATGGGGAtccaggTCTGGATGTTGACGGGCGATTCgcgggcgg
cggcagaggcgGTGGCGCACAGCATCGGCATCAAGCACGTGCAGGCGGGG
ACCCTGCCCGGGCAGAAGGCCAAGAAAATTCAGGCACtgcagGCTCGAGG
CCATCGAGTCTGTATGCTGGGAGACGGGATCAACGACTCGCCGGCATTGG
CCCAGGCGGACGTGGGGGTGGCGATTGGAACCGGGGCAcaggtGGCCTGT
GAGGCTGCGgacctcatcctcctccacaactccctccctgacctgGTGAC
CGCCTTGCACCTGGCGCGGACGGTCTTCCGTCGCATCCAGCTCAACATGC
TGTGGGCGCTCGGTTACAATTTAATCGGCATTCCTTTCGCGGCCGGTGCC
TTTTTGCCCATTTTGGGCTGGCGCCTTCCTCCGGGCTACTCGGGTGCGTG
CTCGTCGTTGCCGGCTCGTGCGAGTCGCTTGCCTCGTCTTGCCAGGGACG
TGATGTGTTGGCTCACTCTCTccactctccccccccccttcggtCTCTCg
gtctctcccctccccccccccctccaaaaAAGGTCTGGCCATGACtatgt
cctccctctctgtcgtcatctcctccttggccctccGCTTCTACCAACGG
CCCGACTTGGACAAAGTTGGCTCGATTTTTGCCCGGCATGGGCGAGAAag
acgggagaggagggaaaggacagCCTCGCAGCTGCAGCCATTGGTGCTGG
GGGAagtggagcgggaggaagacgaggaagagggcaggaggagaggaatg
agCCGAGGGCGTCTGGATTCAGGTAA back to top
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