EWM23454.1, cds7218 (CDS) Nannochloropsis gaditana

Overview
NameEWM23454.1
Unique Namecds7218
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:78662..78673 +
Alignment locationCM002471.1:78839..78961 +
Alignment locationCM002471.1:79148..79246 +
Alignment locationCM002471.1:79488..80072 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23454.1
Productp-type atpase
Orig transcript idgnl|cribi|Naga_100415g5.10371.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:78662..78673 +
CM002471.1supercontigCM002471.1:78839..78961 +
CM002471.1supercontigCM002471.1:79148..79246 +
CM002471.1supercontigCM002471.1:79488..80072 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR001757P_typ_ATPase
Homology
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|585104500|gb|EWM23455.1| (p-type atpase [Nannochloropsis gaditana])

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR 272
            MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR
Sbjct:   97 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR 368          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|585104499|gb|EWM23454.1| (p-type atpase [Nannochloropsis gaditana])

HSP 1 Score: 541.962 bits (1395), Expect = 0.000e+0
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR 272
            MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR
Sbjct:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPPFGLSVSPLPPPLQKRSGHDYVLPLCRHLLLGPPLLPTARLGQSWLDFCPAWARKTGEEGKDSLAAAAIGAGGSGAGGRRGRGQEERNEPRASGFR 272          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|694439818|ref|XP_009346763.1| (PREDICTED: probable copper-transporting ATPase HMA5 [Pyrus x bretschneideri])

HSP 1 Score: 171.014 bits (432), Expect = 1.937e-46
Identity = 83/171 (48.54%), Postives = 117/171 (68.42%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGA----------CSSLPARASRLPRL 161
            M ++  M+TGD+   A ++A  +GI+ V A   P QKA+K++ LQA G+ V M+GDGINDSPAL  ADVG+AIG G  +A EAAD++L+ ++L D++TA+HL+R  F RI+LN +WALGYN++GIP AAGA  P  G+RLPP  +GA          C SL  +  + P++
Sbjct:  294 MKVRSIMVTGDNWGTANSIAKEVGIQTVIAEAKPDQKAEKVKDLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSNLEDVITAIHLSRKTFTRIRLNYIWALGYNVLGIPIAAGALFPPTGFRLPPWIAGAAMAASSVSVVCCSLLLKNYKKPKV 464          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|1129852552|gb|OLS20457.1| (Copper-exporting P-type ATPase A [Candidatus Heimdallarchaeota archaeon LC_3])

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-46
Identity = 81/146 (55.48%), Postives = 105/146 (71.92%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG 146
            +GIQ+WM+TGD+   A+A+A  IGIK V A  LPG+KA K++ LQ  G  V M+GDG+ND+PALAQADVG+AIG+G  VA EA D+IL+ +   D+VTA+ L+R   RRI++NM WALGYN  GIP A G F P +   LPP  +G
Sbjct:  676 LGIQIWMVTGDNERTAQAIAKQIGIKEVFAEVLPGEKADKVKLLQDEGFIVGMVGDGVNDAPALAQADVGIAIGSGTDVAIEAGDIILMKDDPRDVVTAIDLSRKTMRRIRMNMFWALGYNSAGIPIAMGLFYPFIHLTLPPELAG 821          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|90079111|dbj|BAE89235.1| (unnamed protein product [Macaca fascicularis])

HSP 1 Score: 164.851 bits (416), Expect = 3.945e-46
Identity = 76/135 (56.30%), Postives = 101/135 (74.81%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPI 135
            MG+ V ++TGD+R  A A+A  +GI  V A  LP  K  K+Q LQ  G RV M+GDG+NDSPALAQAD+GVAIGTG  VA EAAD++L+ N L D+V ++HL++ + RRI++N++ AL YNL+GIP AAG F+PI
Sbjct:   22 MGVDVVLITGDNRKTARAIATQVGINKVFAEVLPSHKVAKVQELQNEGKRVAMVGDGVNDSPALAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRIVRRIRINLVLALIYNLVGIPIAAGVFMPI 156          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|1137182717|gb|OMO58678.1| (Cation-transporting P-type ATPase [Corchorus olitorius])

HSP 1 Score: 165.622 bits (418), Expect = 7.085e-46
Identity = 82/170 (48.24%), Postives = 114/170 (67.06%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGA----------CSSLPARASRLPR 160
            M ++  M+TGD+   A ++A  IGI+ V A   P  KA+K++ LQA G+ V M+GDGINDSPAL  ADVG+AIG G  +A EAAD++L+ ++L D++TA+ L+R  F RI+LN +WALGYN++GIP AAGA  P  G+RLPP  +GA          C SL  +  + P+
Sbjct:  130 MNVRSIMVTGDNWGTASSIARQIGIETVVAEAKPEHKAEKVKDLQAAGYAVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNILGIPIAAGALFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKNYKRPK 299          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|1072928362|ref|XP_018474932.1| (PREDICTED: probable copper-transporting ATPase HMA5 [Raphanus sativus])

HSP 1 Score: 163.31 bits (412), Expect = 8.319e-46
Identity = 78/148 (52.70%), Postives = 103/148 (69.59%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGAC 148
            M I   M+TGD+   A ++A  +GI  V A   P QKA+K++ LQ  GH V M+GDGIND+PAL  ADVG+AIG G  +A EAAD++L+ ++L D++TA+ L+R  F RI+LN +WALGYNLIGIP AAG   P    RLPP ++GA 
Sbjct:   66 MNIVSIMVTGDNWGTANSIAREVGIDFVMAEAKPKQKAEKVKELQEGGHVVAMVGDGINDAPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLIGIPIAAGVLFPWTHLRLPPWFAGAA 213          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|1148386879|gb|OOK76930.1| (HAD ATPase, P-type, IC family protein [Mycobacterium kansasii])

HSP 1 Score: 161.384 bits (407), Expect = 2.019e-45
Identity = 88/165 (53.33%), Postives = 111/165 (67.27%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSG---ACSSLPA--RASRLPR 160
            +G+QV M+TGD+   A A+A  +G+  V A  LP  KA +I+ LQA G RV M+GDGIND+PALAQADVG+AIGTG  VA EAAD+IL+  SL  +VTA+ L+R   R I+ N+ +AL YN IGIP AAG   P+LG RL P  +    A SSL     A+RL R
Sbjct:   19 LGLQVVMITGDNARTAAAIARQVGVSRVLAEVLPEHKASEIRRLQAEGRRVGMVGDGINDAPALAQADVGLAIGTGTDVAIEAADIILISGSLAGVVTAIRLSRATMRNIRQNLFFALIYNAIGIPLAAGVLYPLLGLRLSPMIAAGAMALSSLSVVGNANRLRR 183          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|1035926931|gb|OAY56518.1| (hypothetical protein MANES_02G023200 [Manihot esculenta] >gi|1035926932|gb|OAY56519.1| hypothetical protein MANES_02G023200 [Manihot esculenta])

HSP 1 Score: 172.94 bits (437), Expect = 2.118e-45
Identity = 86/177 (48.59%), Postives = 118/177 (66.67%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGACSSLPARASRLPRLARDVMCWLTLSTLPPP 177
            M ++  M+TGD+   A ++A  +GI+ V A T P QKA+K++ LQA G+ V M+GDGINDSPAL  ADVG+AIG G  +A EAAD++L+ ++L D++TA+ L+R  F RI+LN +WALGYNL+GIP AAGA  P  G+RLPP  +GA  +  + +         VMC L L     P
Sbjct:  676 MKVRSIMVTGDNYGTANSIAREVGIETVMAETKPEQKAEKVKELQASGYVVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPGTGFRLPPWVAGAAMAASSVSV--------VMCSLLLKNYKRP 844          
BLAST of EWM23454.1 vs. NCBI_GenBank
Match: gi|1130862620|dbj|GAV57945.1| (E1-E2_ATPase domain-containing protein/HMA domain-containing protein/Hydrolase domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 173.326 bits (438), Expect = 2.186e-45
Identity = 78/147 (53.06%), Postives = 109/147 (74.15%), Query Frame = 0
Query:    1 MGIQVWMLTGDSRAAAEAVAHSIGIKHVQAGTLPGQKAKKIQALQARGHRVCMLGDGINDSPALAQADVGVAIGTGAQVACEAADLILLHNSLPDLVTALHLARTVFRRIQLNMLWALGYNLIGIPFAAGAFLPILGWRLPPGYSGA 147
            + ++  M+TGD+   A+++A  +GI +V     P QKA+K++ LQA GH V M+GDGINDSPAL  ADVG+AIG G  +A EAAD++L+ ++L D++TA+ L+R  F RI+LN +WALGYNL+GIP AAGA  P+ G+RLPP  +GA
Sbjct:  737 LKVKSIMVTGDNWRTAKSIAKEVGIDYVIGEAKPDQKAEKVKELQASGHTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRNTFSRIRLNHIWALGYNLLGIPIAAGALFPLTGFRLPPWIAGA 883          
The following BLAST results are available for this feature:
BLAST of EWM23454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104500|gb|EWM23455.1|0.000e+0100.00p-type atpase [Nannochloropsis gaditana][more]
gi|585104499|gb|EWM23454.1|0.000e+0100.00p-type atpase [Nannochloropsis gaditana][more]
gi|694439818|ref|XP_009346763.1|1.937e-4648.54PREDICTED: probable copper-transporting ATPase HMA... [more]
gi|1129852552|gb|OLS20457.1|2.184e-4655.48Copper-exporting P-type ATPase A [Candidatus Heimd... [more]
gi|90079111|dbj|BAE89235.1|3.945e-4656.30unnamed protein product [Macaca fascicularis][more]
gi|1137182717|gb|OMO58678.1|7.085e-4648.24Cation-transporting P-type ATPase [Corchorus olito... [more]
gi|1072928362|ref|XP_018474932.1|8.319e-4652.70PREDICTED: probable copper-transporting ATPase HMA... [more]
gi|1148386879|gb|OOK76930.1|2.019e-4553.33HAD ATPase, P-type, IC family protein [Mycobacteri... [more]
gi|1035926931|gb|OAY56518.1|2.118e-4548.59hypothetical protein MANES_02G023200 [Manihot escu... [more]
gi|1130862620|dbj|GAV57945.1|2.186e-4553.06E1-E2_ATPase domain-containing protein/HMA domain-... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7235rna7235Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications