rna7233, rna7233 (mRNA) Nannochloropsis gaditana

Overview
Namerna7233
Unique Namerna7233
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length401
Alignment locationCM002471.1:77001..77488 +

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Properties
Property NameValue
Productheavy metal translocating p-type atpase
Orig transcript idgnl|cribi|Naga_102999g1.3788.mrna
Orig protein idgnl|cribi|Naga_102999g1.3788
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:77001..77488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102999g1gene6998Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7233rna7233-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23457.1cds7216Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7233 ID=rna7233|Name=rna7233|organism=Nannochloropsis gaditana|type=mRNA|length=401bp
ACAGGCGCAAGCGTTGATGAAGCACGCGCCGGAGGGAGAGGCGGAGGCGG
CGGAGGAGAGCGAGGATGAGGGTCTGATTGGCCCTTCCATGGACGATGGC
CGGGAAGCGGTGCCCGACGAGATGTGAGCAAGCAGGGAGGGAGGGAGGGA
GGGAGGGAGAGACTGGGGTAGGTAGTGAGCGACGTGCAATGAGTAAGCCA
CCGCAAGGGAAAGAGGAGACGGAGGAGAAGGAGGAGAACGAGCGTCGGCA
TTGTCCTCGGAAGGCTGCTTGTCACGCATGCCCCATCCTTCCACCACCCC
CTCCCCTCCTCCACCCCACCGACCCCCTTCCCTCCTTCCCTACTTCCCTC
CTTCCCCACAGCGCCTACCGTCACGTCCGAGAGAAGCGGGCTGCGGCCGC
T
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protein sequence of rna7233

>rna7233-protein ID=rna7233-protein|Name=rna7233|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATL
VAVVWLAVGFAGWLPPSYLSHPA
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mRNA from alignment at CM002471.1:77001..77488+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7233 ID=rna7233|Name=rna7233|organism=Nannochloropsis gaditana|type=mRNA|length=488bp|location=Sequence derived from alignment at CM002471.1:77001..77488+ (Nannochloropsis gaditana)
ATGCGCGCCACGAGCGTGGGGCGCGACACGGCCCTCTCTCAGATCCTCGC
ATTGGTCCAGGTAGGGCTAGGAGTAGGGTCAGGAGAGATACTAAGGttgt
ggagggcgggggagtaGAGGGTGTGGACGCCAGGCCCAcatttctccccc
cccccggatttttccattttctcttccctgccctccccctctcgccccct
cgttccctccctccaggaggCACAGCTTTCGAAGCCACCGATCCAGCGAT
ATGCGGATCGGATCGCGTCCCGTTTCACGCCCTCTGTGATGCTGTTGGCC
ACCCTTGTGGCCGTCGTCTGGCTCGCCGTGGGGTTTGCCGGctggctccc
tcccagctATCTTTCCCACCcgggtgagggaaggagggaaggagggaagg
agggaaggagggagggaggggtggaaggagggcgtgggccaAGCTTTTGC
CGACTACTGTGCCGACTGTGCCCTTCACCTCAGCCTAA
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Coding sequence (CDS) from alignment at CM002471.1:77001..77488+

>rna7233 ID=rna7233|Name=rna7233|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at CM002471.1:77001..77488+ (Nannochloropsis gaditana)
ATGCGCGCCACGAGCGTGGGGCGCGACACGGCCCTCTCTCAGATCCTCGC
ATTGGTCCAGgaggCACAGCTTTCGAAGCCACCGATCCAGCGATATGCGG
ATCGGATCGCGTCCCGTTTCACGCCCTCTGTGATGCTGTTGGCCACCCTT
GTGGCCGTCGTCTGGCTCGCCGTGGGGTTTGCCGGctggctccctcccag
ctATCTTTCCCACCcggCCTAAATGCGCGCCACGAGCGTGGGGCGCGACA
CGGCCCTCTCTCAGATCCTCGCATTGGTCCAGgaggCACAGCTTTCGAAG
CCACCGATCCAGCGATATGCGGATCGGATCGCGTCCCGTTTCACGCCCTC
TGTGATGCTGTTGGCCACCCTTGTGGCCGTCGTCTGGCTCGCCGTGGGGT
TTGCCGGctggctccctcccagctATCTTTCCCACCcggCCTAAATGCGC
GCCACGAGCGTGGGGCGCGACACGGCCCTCTCTCAGATCCTCGCATTGGT
CCAGgaggCACAGCTTTCGAAGCCACCGATCCAGCGATATGCGGATCGGA
TCGCGTCCCGTTTCACGCCCTCTGTGATGCTGTTGGCCACCCTTGTGGCC
GTCGTCTGGCTCGCCGTGGGGTTTGCCGGctggctccctcccagctATCT
TTCCCACCcggCCTAA
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Synonyms
Publications