EWM23457.1, cds7216 (CDS) Nannochloropsis gaditana

Overview
NameEWM23457.1
Unique Namecds7216
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:77001..77060 +
Alignment locationCM002471.1:77217..77373 +
Alignment locationCM002471.1:77484..77488 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM23457.1
Productheavy metal translocating p-type atpase
Orig transcript idgnl|cribi|Naga_102999g1.3788.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:77001..77060 +
CM002471.1supercontigCM002471.1:77217..77373 +
CM002471.1supercontigCM002471.1:77484..77488 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005215transporter activity
GO:0046872metal ion binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0019725cellular homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR008250ATPase_P-typ_transduc_dom_A
Homology
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|585104503|gb|EWM23457.1| (heavy metal translocating p-type atpase [Nannochloropsis gaditana])

HSP 1 Score: 145.591 bits (366), Expect = 2.660e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGFAGWLPPSYLSHPA 73
            MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGFAGWLPPSYLSHPA
Sbjct:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGFAGWLPPSYLSHPA 73          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|780056590|ref|XP_011669845.1| (PREDICTED: copper-transporting ATPase 1-like [Strongylocentrotus purpuratus])

HSP 1 Score: 73.9442 bits (180), Expect = 8.168e-16
Identity = 31/60 (51.67%), Postives = 46/60 (76.67%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGF 60
            M AT VG+DTAL+QI+ LV++AQ SK PIQ+ AD+I+ RF P+++ L+ +   +WL +GF
Sbjct:    2 MEATHVGKDTALAQIVKLVEDAQTSKAPIQQIADKISGRFVPAILFLSIITLGIWLTIGF 61          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|828229255|ref|XP_012564496.1| (PREDICTED: copper-transporting ATPase 1 [Hydra vulgaris])

HSP 1 Score: 77.0258 bits (188), Expect = 7.887e-15
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGF 60
            ++A +VG +T LSQI+ LV+ AQ+SK PIQR+ADR+AS F P ++LL++   +VWL +GF
Sbjct:  651 IKAVNVGEETTLSQIVKLVENAQISKAPIQRFADRLASVFVPGIILLSSSTLIVWLVIGF 710          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|168045056|ref|XP_001774995.1| (predicted protein [Physcomitrella patens] >gi|162673742|gb|EDQ60261.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 76.6406 bits (187), Expect = 9.367e-15
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGFAGWLPPSYLS 70
            +RA  VGRDTAL+QI+ LV+ AQ+SK PIQ++AD +AS F P V+LLA L  +VW   G  G  P S++S
Sbjct:  526 IRAMRVGRDTALAQIVNLVETAQMSKAPIQKFADYVASIFVPVVLLLAALTFMVWYVAGKMGAYPDSWIS 595          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|242001592|ref|XP_002435439.1| (copper-transporting ATPase 1, putative [Ixodes scapularis] >gi|215498775|gb|EEC08269.1| copper-transporting ATPase 1, putative, partial [Ixodes scapularis])

HSP 1 Score: 76.6406 bits (187), Expect = 1.198e-14
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGFA 61
            + AT VG+DT L+QI+ LV+EAQ SK PIQ+ ADRIA  F P+V+LL+ L  +VW+ VGF+
Sbjct:  649 VNATHVGKDTTLAQIVKLVEEAQSSKAPIQQLADRIAGYFVPTVVLLSILTLIVWIVVGFS 709          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|1083364917|gb|OGE83126.1| (copper-translocating P-type ATPase, partial [Candidatus Delongbacteria bacterium GWF2_40_14])

HSP 1 Score: 76.2554 bits (186), Expect = 1.368e-14
Identity = 32/58 (55.17%), Postives = 46/58 (79.31%), Query Frame = 0
Query:    2 RATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVG 59
            RA  +G+DT LS+I+ LV++AQ+ K PIQRYAD+I+S F PSV+L+A +  + WL+VG
Sbjct:  187 RAERIGKDTVLSRIIKLVEDAQIKKAPIQRYADKISSHFVPSVILIAAVTFIAWLSVG 244          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|966392063|ref|WP_058438827.1| (heavy metal translocating P-type ATPase [Dehalogenimonas alkenigignens] >gi|962029052|gb|KTB47911.1| ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase [Dehalogenimonas alkenigignens])

HSP 1 Score: 76.2554 bits (186), Expect = 1.674e-14
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGFAGWLPPS 67
             RAT VGR+TAL QI+ LV+EAQ +K PIQ+ ADR+A +F   V  +A +V V W  +GF  W  P 
Sbjct:  383 FRATRVGRETALGQIIKLVEEAQTTKAPIQKLADRVAGQFIAGVHAIALIVFVFWFFIGFEAWFTPD 449          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|1168894680|ref|XP_020489842.1| (copper-transporting ATPase 2-like [Labrus bergylta])

HSP 1 Score: 75.485 bits (184), Expect = 2.545e-14
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVGFAGW 63
            + AT VG DT L QI+ LV+EAQ SK PIQ++ADRI+  F P +ML++ L  V WLAVGF  +
Sbjct:  739 VEATHVGADTTLCQIVKLVEEAQTSKAPIQQFADRISGYFVPFIMLVSLLTLVAWLAVGFVNF 801          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|813177211|ref|XP_012205075.1| (hypothetical protein SPRG_20876 [Saprolegnia parasitica CBS 223.65] >gi|641530148|gb|KDO24290.1| hypothetical protein SPRG_20876 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.0998 bits (183), Expect = 3.251e-14
Identity = 39/69 (56.52%), Postives = 47/69 (68.12%), Query Frame = 0
Query:    1 MRATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLA-VGFAGWLPPSY 68
            MR T VGRDTALSQI+ LV++AQ SK PIQ YAD+IAS F P V+ L+ L   VW   V F   +PP +
Sbjct:  504 MRVTGVGRDTALSQIVRLVEDAQTSKAPIQAYADKIASVFVPIVLGLSVLTFAVWFGLVSFGYVVPPDH 572          
BLAST of EWM23457.1 vs. NCBI_GenBank
Match: gi|1125420220|gb|OLD51345.1| (copper-translocating P-type ATPase, partial [Armatimonadetes bacterium 13_1_40CM_3_65_7])

HSP 1 Score: 75.0998 bits (183), Expect = 3.455e-14
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = 0
Query:    2 RATSVGRDTALSQILALVQEAQLSKPPIQRYADRIASRFTPSVMLLATLVAVVWLAVG 59
            RAT VGRDT L+QI+ LVQEAQ SK PIQR ADR+AS F P+VM LA +  + WL  G
Sbjct:  113 RATKVGRDTVLAQIIQLVQEAQGSKAPIQRLADRVASYFVPAVMALAVVTFLTWLVFG 170          
The following BLAST results are available for this feature:
BLAST of EWM23457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104503|gb|EWM23457.1|2.660e-44100.00heavy metal translocating p-type atpase [Nannochlo... [more]
gi|780056590|ref|XP_011669845.1|8.168e-1651.67PREDICTED: copper-transporting ATPase 1-like [Stro... [more]
gi|828229255|ref|XP_012564496.1|7.887e-1553.33PREDICTED: copper-transporting ATPase 1 [Hydra vul... [more]
gi|168045056|ref|XP_001774995.1|9.367e-1554.29predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|242001592|ref|XP_002435439.1|1.198e-1457.38copper-transporting ATPase 1, putative [Ixodes sca... [more]
gi|1083364917|gb|OGE83126.1|1.368e-1455.17copper-translocating P-type ATPase, partial [Candi... [more]
gi|966392063|ref|WP_058438827.1|1.674e-1450.75heavy metal translocating P-type ATPase [Dehalogen... [more]
gi|1168894680|ref|XP_020489842.1|2.545e-1455.56copper-transporting ATPase 2-like [Labrus bergylta... [more]
gi|813177211|ref|XP_012205075.1|3.251e-1456.52hypothetical protein SPRG_20876 [Saprolegnia paras... [more]
gi|1125420220|gb|OLD51345.1|3.455e-1463.79copper-translocating P-type ATPase, partial [Armat... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7233rna7233Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications