rna723, rna723 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna723
Unique Name	rna723
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1705
Alignment location	CM002456.1:265511..267957 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100247g5.2334.mrna
Orig protein id	gnl\|cribi\|Naga_100247g5.2334
Gbkey	mRNA
Note	encoded by transcript variant 3; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:265511..267957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100247g5	gene694	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna723	rna723-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29951.1	cds723	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:265511..267957+
coding sequence from alignment at CM002456.1:265511..267957+

mRNA sequence

>rna723 ID=rna723|Name=rna723|organism=Nannochloropsis gaditana|type=mRNA|length=1705bp
AAAGTTGTATGTTCTATTCTTTCCGGTGGTATTTCGAGTCATAAAATATT
TTTCTTCTCTCTCGCTACTTGAAGAAGAACCGACTGTGCACGCGCAATAC
TGTCACCAAATATGGCCCCAGGGGTACTTCCAGCAAAAATGTTCTCAAAG
AATTGCCCCCATAAATCCATACACCATAAAATAATCACACAGTTTCTTGA
AGCAGCTGGGAGGGGGGCCTGGAGCCATGTCAAAAATAAGACGGACACAA
CGAGATGGTCGCCGGCAGTTGACACGTTTGGCTACCTCTATCGTTCTCAT
CGTTTCTGCCTGCCCTGCCGTCATCACGGACGCGACCCGGGCCACCCTGT
CGTTTTCCATCCTTCCTCGCCTCTTTGCACGACGTGCAGGCAGCAGCAAT
GGATTGCATCCTCTCTCTTCCCCTTCCTCCGCGACCCCCACCACCACTAG
CCTGCCTGCAACTGAAATCAATGCTCCTTTCCCCCCCCCTTCGGAATTTC
CAACCTCTGAGCTAGGCTTTTCCTTCAGTCCTGCAGGCTTACTTTTCCCC
TATCACCTGGGTGTCGCGTCTGTGCTTCGGGAAAAGCGTTTGATTACCGA
TCAAGTCCCCCTGGGAGGCTCGAGTGCCGGTGCCCTTGTGGCGGTTTTGA
TTGGCTCAGATATTTCGATGAAAAAAGCTCTCGATGCGTGCCACACCATC
AACAACCAATGGAGCGGGGCCATGTCTTTCACCGGAGTCATAACAGAAAA
TTTGTTCAACTTCGATTTTGGTGGGGGAGCAGCCGACTCGCATGAAGAGG
CAGTGGCGGCGGCCTTGGCAGCAGGGGTGACGCTCCCTCCCTCCCTCCCT
CCTTCCTACTCGACAAGGTTGACGAACATCAACGGTCGTCGCACCCTCAA
AGCCTTATTGGAGGAGGTACTGGACCAGGTCCTTCCCCCAGACGCCCACG
AGCGTTTGAACGCGCGGCCGGGGAAGGTGACGGTCGGTGTCACGAACTTG
GGCTGGTCAGGTTTTCGCGCCAATTTTTTCCTTCGGCCCCGGGCAATTTC
CTCCTTTGCCTCCCGCGCCGACCTGATCGAAGTCCTCCTTGCCTCCTGCA
ACGTCCCCGTCCTCTTTGCCGGGTATCCTTCGCTGCCCTGCCGGGGCCTC
CCGTCCATCGACGGCTACTTTAGCGTGCCTGCCCACCGGTTCGGCTGCCC
TTACCTTGCGGGCGCTGCCCGTACCATTTTGGTCTCACCCTTCCCGGCGA
CAGCTGTCATGCGGGGCCCGGGGCCCACGGCGGAGGAGGAGGGTGGAAGG
GAGTGGTTGAGTCCGGAGGTGGAGGAGGGATGGGGGGAGGGAGGGAGGAA
GGGGATGCGGGAGCTGTTGCGCGACGCGTGGTCGGTGAATGGGAGGGAGG
TGGTGGAGCGGTATTACGAGTTAGGAAGGAGGGATGCACAGGCATGGGTG
GATAAGAGCGAGTACATGAGGCGGAAGCTTAAAGGAGGGGGGGGCTTGAT
GATCCCTTTCTTGTGATGAGAGGGGGAAGGAAGGAGAGAGGGAGGGAGAG
AGGGGAGGAATGGCAGCGATGGTGCGATGGCCAAAACTGTGACAACTGCG
GTAAATCATTGTAACATCATCGAAGGCTCGACTGTATCCAATCAATACTG
TACGCGTGGTAAAATCAAAACGCAAAGACCAACAATTAAAGGAGGCCTCG
TGGGA

protein sequence of rna723

>rna723-protein ID=rna723-protein|Name=rna723|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKIS
SWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYA
ADAKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASA
KKAESALDDGIDHARGIFGGIKDFFK

mRNA from alignment at CM002456.1:265511..267957+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna723 ID=rna723|Name=rna723|organism=Nannochloropsis gaditana|type=mRNA|length=2447bp|location=Sequence derived from alignment at CM002456.1:265511..267957+ (Nannochloropsis gaditana)
ATTTTTGCTGGAAGTACCCCTGGGGCCATATTTGGTGACAGTATTGCGCG
TGCACAGTCGGTTCTTCTTCAAGTagcgagagagaagaaaaatatTTTAT
GACTCGAAATACCACCGGAAAGAATAGAACATACAACTTTGATCCACATT
CTCATTTTCATCCGACTCGTGGACACAGAATCCTTCGCGCTTAACCCTCT
CACGACCATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCG
TGGTGTCTGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAAT
TCTCTCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAA
AATCTCGTCGTGGACGAAGAGTGGCGATGAGGTAAGATATGTGGTCTCGA
GCGAAAGAATAAGGTCCATCGTGCGATGCCATCGACGTCGAACCTGATGG
CAAATTGAAGATCTGCCCTCTTGCTGAttctcccacccttccgcGACTGC
TTTCTTTAGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCTGCTTCCGA
CAGGACGAAAAACAAGATTGACGAGACTGATGCCAGGCTAAAGAAAGCGC
AGACGGATGCGGAGGTAAtgatgggggaagaggggtgaCGTTGAAGTCCG
TCGAAGGGGGACGGATGCGTCCAAACGACCGAGCCAACGAAAAATGTGGA
CCCTGATGCCAAACAATCAGTAGAGACAAGACGATGGTGACAAATATCCT
GGGCAAGACTTTAATGATTGCAGTAGATCACAGGCTTTGTGCCATATAGC
GCTGGCGAAGATTCGTCACTCTCGTTGCTCACgttcactcccttcctttc
cccctccgacTCGATACCCATCAGACAAAAGCCAAAAAGTACGCAGCAGA
CGCCAAGGTCAAGGcagagaagacgaaggccgAGGCCAAGGTAGGAGCGC
TGCCTGAAGTCCCCTATTTCGCCCTTATCCTGCTCTTGAAGACGCGGTTT
GTCGGACTTGTCAGGCCTCGTCTTGATGATTGCATGGCATCGACCAAAGT
ATCCTGCGTGTAATTTTTCATGGATCGATTGTTGAAGTTGGACCTTGCCC
CATCATAGATTCTGCTCGTGTTTGCCTGTGGTCCAGTCTTTgctttcttg
gccttggaAGACCGCGCGTCCCActtttcttttgctttctttctctctcg
aTCCCTTACTGATGTTTGTAGGCCAAAGCACAACAAATGGCGGATGAGGC
CAAGGCAAGTGCAGAGAAGATGAAGGCCGACGCCAAGGTTAGAATCGTGA
TCCCGCGTGCGTGCACAGGGCATGACAAGGATACGTACATGTGCACCGGC
ATGTTTTGATAACAGGGCTGGCAGGCGATCTGAGATGTGGGAATACAGCG
TGAGAGTTACGCATGGCCGTGCATTGTGcggtgcccctcccttcagggag
gtgggaaatCGACGTGACACAGGCTCCCCTACCCCTCCGCCGTTCCCTGT
CCCGGCCTCGTTCTGCGCGAGCCAGCCTGCTGCTTTCTGGTTTCTTCCAA
TACATAACGTAGCAAGACCATGCACCGTATTTAAtttcctcgttcccttc
ctctttcctttatcctccttctttctcttttccccccagTCCGCCGCCGA
CCGCACCCGGGCCAAGGTAGAGGaacagaagaagagggcgcACGCCGCGG
CCGAAagggccgagaaggaggcaaaCCGGCTCGCGGATCAGGCGAAACAT
GCCAAGTCGGAATGGAAGGCTTCTGCCAAGAAGGCAGAGTCGGCCTTGGA
CGACGGGATCGATCATGCCCGGGGCATCTTTGGAGGCATCAAAGATTTTT
TCAAATAAACGGATGAGTAACACGACGGGCTGGGGTCACGGTGACTATGC
aacgaaagaggaggagttggtCTGGCaccttggagggaggaaagggagcg
ttTCGTGCCTTGCATCTCTGGGGTTGGGTGGGATACTTGAACTCGGATGC
CTGATGCGATATGGGGGAATGATGCCTCTTGCAAGAGTGGTAAAAATTGA
CGTTTAAATAATCTAAGGGTATATTACAGCCTAATGTATGGCCTGAATAC
AGatcggaagaaggggagaaaaggatcgggagggacaagaaggatCATAA
GAACCAAGCACTTTCCACGCGTCGTATCACCACATTGTCCAACTGGATAT
GAGAGAAGGGGCAACGAGGGTTTGAGAAGATTGGCAGTatgaaaggggag
aagattGTAGGGAGCGTAGCCACATGGGCTATTCGGGCTTCGCAACCCCC
AAAACAAACCACGACACTTACGTTCAAATCATGAAAAAGGGGGATGCGGG
ATAAAGCTTGTGAAGAATGGAGGAAACCCGTCGCTAAGGGGATCgaaggg
aaatggaagaagtAACGCAAGCAAACTCGGAGCCATCTGCTTTTTGC

Coding sequence (CDS) from alignment at CM002456.1:265511..267957+

>rna723 ID=rna723|Name=rna723|organism=Nannochloropsis gaditana|type=CDS|length=2124bp|location=Sequence derived from alignment at CM002456.1:265511..267957+ (Nannochloropsis gaditana)
ATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGTGTC
TGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTCTCT
TGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATCTCG
TCGTGGACGAAGAGTGGCGATGAGGCCATTGATAGAGCCTCCAAGGCGGT
AGACTCTGCTTCCGACAGGACGAAAAACAAGATTGACGAGACTGATGCCA
GGCTAAAGAAAGCGCAGACGGATGCGGAGACAAAAGCCAAAAAGTACGCA
GCAGACGCCAAGTCCGCCGCCGACCGCACCCGGGCCAAGGTAGAGGaaca
gaagaagagggcgcACGCCGCGGCCGAAagggccgagaaggaggcaaaCC
GGCTCGCGGATCAGGCGAAACATGCCAAGTCGGAATGGAAGGCTTCTGCC
AAGAAGGCAGAGTCGGCCTTGGACGACGGGATCGATCATGCCCGGGGCAT
CTTTGGAGGCATCAAAGATTTTTTCAAATAAATGCGTTCTTTTGCGTCCT
TTGGAACCGTGGCCACTTTGCTCGTGGTGTCTGTTGCCGGCATCGCGGCC
AACATCAACACCTGTACTAGCAATTCTCTCTTGAACATCCGTGGAGGCGG
TTTCTTTGAGAAACTCGACTCCAAAATCTCGTCGTGGACGAAGAGTGGCG
ATGAGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCTGCTTCCGACAGG
ACGAAAAACAAGATTGACGAGACTGATGCCAGGCTAAAGAAAGCGCAGAC
GGATGCGGAGACAAAAGCCAAAAAGTACGCAGCAGACGCCAAGTCCGCCG
CCGACCGCACCCGGGCCAAGGTAGAGGaacagaagaagagggcgcACGCC
GCGGCCGAAagggccgagaaggaggcaaaCCGGCTCGCGGATCAGGCGAA
ACATGCCAAGTCGGAATGGAAGGCTTCTGCCAAGAAGGCAGAGTCGGCCT
TGGACGACGGGATCGATCATGCCCGGGGCATCTTTGGAGGCATCAAAGAT
TTTTTCAAATAAATGCGTTCTTTTGCGTCCTTTGGAACCGTGGCCACTTT
GCTCGTGGTGTCTGTTGCCGGCATCGCGGCCAACATCAACACCTGTACTA
GCAATTCTCTCTTGAACATCCGTGGAGGCGGTTTCTTTGAGAAACTCGAC
TCCAAAATCTCGTCGTGGACGAAGAGTGGCGATGAGGCCATTGATAGAGC
CTCCAAGGCGGTAGACTCTGCTTCCGACAGGACGAAAAACAAGATTGACG
AGACTGATGCCAGGCTAAAGAAAGCGCAGACGGATGCGGAGACAAAAGCC
AAAAAGTACGCAGCAGACGCCAAGTCCGCCGCCGACCGCACCCGGGCCAA
GGTAGAGGaacagaagaagagggcgcACGCCGCGGCCGAAagggccgaga
aggaggcaaaCCGGCTCGCGGATCAGGCGAAACATGCCAAGTCGGAATGG
AAGGCTTCTGCCAAGAAGGCAGAGTCGGCCTTGGACGACGGGATCGATCA
TGCCCGGGGCATCTTTGGAGGCATCAAAGATTTTTTCAAATAAATGCGTT
CTTTTGCGTCCTTTGGAACCGTGGCCACTTTGCTCGTGGTGTCTGTTGCC
GGCATCGCGGCCAACATCAACACCTGTACTAGCAATTCTCTCTTGAACAT
CCGTGGAGGCGGTTTCTTTGAGAAACTCGACTCCAAAATCTCGTCGTGGA
CGAAGAGTGGCGATGAGGCCATTGATAGAGCCTCCAAGGCGGTAGACTCT
GCTTCCGACAGGACGAAAAACAAGATTGACGAGACTGATGCCAGGCTAAA
GAAAGCGCAGACGGATGCGGAGACAAAAGCCAAAAAGTACGCAGCAGACG
CCAAGTCCGCCGCCGACCGCACCCGGGCCAAGGTAGAGGaacagaagaag
agggcgcACGCCGCGGCCGAAagggccgagaaggaggcaaaCCGGCTCGC
GGATCAGGCGAAACATGCCAAGTCGGAATGGAAGGCTTCTGCCAAGAAGG
CAGAGTCGGCCTTGGACGACGGGATCGATCATGCCCGGGGCATCTTTGGA
GGCATCAAAGATTTTTTCAAATAA

Synonyms

Publications