EWM29951.1, cds723 (CDS) Nannochloropsis gaditana

Overview
NameEWM29951.1
Unique Namecds723
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:265718..265891 +
Alignment locationCM002456.1:266020..266124 +
Alignment locationCM002456.1:266385..266417 +
Alignment locationCM002456.1:267150..267368 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29951.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100247g5.2334.mrna
GbkeyCDS
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:265718..265891 +
CM002456.1supercontigCM002456.1:266020..266124 +
CM002456.1supercontigCM002456.1:266385..266417 +
CM002456.1supercontigCM002456.1:267150..267368 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM29951.1 vs. NCBI_GenBank
Match: gi|585112539|gb|EWM29951.1| (hypothetical protein Naga_100247g5 [Nannochloropsis gaditana])

HSP 1 Score: 344.739 bits (883), Expect = 8.611e-120
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 
Query:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFFK 176
            MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFFK
Sbjct:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFFK 176
[Close]
BLAST of EWM29951.1 vs. NCBI_GenBank
Match: gi|585112538|gb|EWM29950.1| (hypothetical protein Naga_100247g5 [Nannochloropsis gaditana])

HSP 1 Score: 337.035 bits (863), Expect = 1.232e-116
Identity = 176/187 (94.12%), Postives = 176/187 (94.12%), Query Frame = 0 
Query:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAAD-----------AKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFFK 176
            MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAAD           AKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFFK
Sbjct:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAKVKAEKTKAEAKSAADRTRAKVEEQKKRAHAAAERAEKEANRLADQAKHAKSEWKASAKKAESALDDGIDHARGIFGGIKDFFK 187
[Close]
BLAST of EWM29951.1 vs. NCBI_GenBank
Match: gi|585112537|gb|EWM29949.1| (hypothetical protein Naga_100247g5 [Nannochloropsis gaditana])

HSP 1 Score: 191.045 bits (484), Expect = 2.626e-59
Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0 
Query:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAKSAADRTRAK 113
            MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAK  A++T+A+
Sbjct:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAETKAKKYAADAKVKAEKTKAE 113
[Close]
BLAST of EWM29951.1 vs. NCBI_GenBank
Match: gi|553182063|ref|XP_005853671.1| (hypothetical protein NGA_0125002 [Nannochloropsis gaditana CCMP526] >gi|422295386|gb|EKU22685.1| hypothetical protein NGA_0125002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.504 bits (480), Expect = 1.197e-58
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 
Query:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAET 94
            MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAET
Sbjct:    1 MRSFASFGTVATLLVVSVAGIAANINTCTSNSLLNIRGGGFFEKLDSKISSWTKSGDEAIDRASKAVDSASDRTKNKIDETDARLKKAQTDAET 94
The following BLAST results are available for this feature:
BLAST of EWM29951.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585112539|gb|EWM29951.1|8.611e-120100.00hypothetical protein Naga_100247g5 [Nannochloropsi... [more]
gi|585112538|gb|EWM29950.1|1.232e-11694.12hypothetical protein Naga_100247g5 [Nannochloropsi... [more]
gi|585112537|gb|EWM29949.1|2.626e-5994.69hypothetical protein Naga_100247g5 [Nannochloropsi... [more]
gi|553182063|ref|XP_005853671.1|1.197e-58100.00hypothetical protein NGA_0125002 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna723rna723Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications