rna7215, rna7215 (mRNA) Nannochloropsis gaditana

Overview
Namerna7215
Unique Namerna7215
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length465
Alignment locationCM002471.1:26630..27893 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101028g2.93.mrna
Orig protein idgnl|cribi|Naga_101028g2.93
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:26630..27893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101028g2gene6977Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7215rna7215-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23475.1cds7198Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7215 ID=rna7215|Name=rna7215|organism=Nannochloropsis gaditana|type=mRNA|length=465bp
ATGAATGAGACCTTGGCTTTGCATTCCACGGGCCTTTCAGCCTCGACGCT
TTCGACCCGACCGCGTCGACCTGAATCTGACCGTCCTGTTCGGGTACTTA
GGGGCGGCTCTCGTAGTAGCCTACCTGGTGCTCGCCCGGTGCGTGAAGGA
GGAGCGGTAGGGGCCCAAAAAGGGGGGGGAGTGGGGGATGGGGAGGGCGA
GGGAGAGAAGCAGGGAGGGGGAGAGCGCGTGGAGGGAACGTCGCCAAGAA
GGACGCTCGTCAACATTGAAAGGGAAATATTGAAAGGGGTGCTGCCAGTC
AGTCCATGTGGTGCCGGCGAGGAGATGCACGCACATCTTGGAAAGGAAGA
GGGCGTCAAATTGGCGCGAACGACACGTGGACACGGGATTCAAGGGCAGG
GTGAAGTCGAGGGGGGGCTCAGAGCATCCCTCGCTTTTCTGGCCCGGACG
CGAGTAAAAGTGTAA
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protein sequence of rna7215

>rna7215-protein ID=rna7215-protein|Name=rna7215|organism=Nannochloropsis gaditana|type=polypeptide|length=254bp
MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGR
LHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANN
LQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQA
IPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVE
GGGYMDPSDPSRVLVDAPVATATYTNPMPHASAPPPSSGSSFNPPAYSGF
SSGR
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mRNA from alignment at CM002471.1:26630..27893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7215 ID=rna7215|Name=rna7215|organism=Nannochloropsis gaditana|type=mRNA|length=1264bp|location=Sequence derived from alignment at CM002471.1:26630..27893- (Nannochloropsis gaditana)
GTAGATCGATGAGTTTCAACCCCTGTCCTGCCAGCGCCCCTCCCTCCTGG
TACCCCGGCGAAGGCCTCCTAGTCACTGCAGATAATGTGGAGTTCTCGCT
GTCCCTCGGCCGGCTTCCCCCTCGACAGAGCAAGGCCACGTGTAAGGCCA
AGGGGCGCCTCCACCTCACCAACATCCGCCTGCTTTTCATCGCCACCAAA
CCAACGGCCAGCCCGGTTCCCGGCGGCCCGGAATTTGCCTCTTTCGACGT
CCCCCTGCGCGGCATCGTGGACGTGAAATTTAACCAACCCATTTTTGGCG
CGAACAATCTGCAAGGCAAAGTGACGCCGGTTTCTTGCCTGGAAGCGTCG
GCCCCTGTGGAATGGAAAGCCGCTTTTATCGCGGGGGGGACCACAGTCCT
CATCCCCACCTTGCTCCGTCTTATGGACCAATTGCACAGGGAGGCGCAAG
GGCAGGCAATACCAGCCCAGCAATTGCGAACGCCCCAACAACAGCCACAT
CACGGACAACCGCCGCAACCGCAACCACATGCACCGCAGCAGCAGCAGCC
CTGGTATGGGGGGGAGGGGACCTTGCCCGTCGCGCAGGCGGTAGCTCCCG
GCGTAGAGGGAGGAGGGTACATGGACCCAAGCGACCCCTCGCGGGTGCTG
GTGGACGCGCCAGTGGTGAGGGAGGGAGGGAGGAAGGGGTGGAGGAAGGG
AGGGAGGGAGGGGTAGAAAAGGCGAGAGGAGTGGGGAGGGAAAAGGGCAA
GGAGGGGAAACGTTGCACGTGAGGGACGATGGAAGAACACGAAGTAAGAA
GACATAGCCCCTGGCTCGGGCTCCTGTCGCTACCATACACTAATTCACGT
CTTCTGTCAACGGGTATTCCCTCCTCCTTCTTACAGGCCACAGCGACGTA
TACGAATCCGATGCCGCACGCCTCTGCCCCTCCCCCGTCCTCTGGCTCCT
CCTTCAACCCGCCAGCCTACAGCGGGTTCTCCTCAGGGCGGTGAAGGAAG
CGGGAAAAATGAGGGGTGCGAAGAAGGAAGGGGCTTGGGAAGGGCGGGAA
AGAGGGATGGACGGAGGAGGATGTAGTAAACCTGTGCAGATGCTTGTGGG
AAGGAGCAGAAGAGGGCCGAAATCTAAATAAAACGAGGACCGTGAACAAG
AGCGGGTGAACTCCATCGTGGGTGTCAAAGAGTTTGCTCACGGCGCCTCT
TACTCTCTCCTTCTCGCCCTTTCTGACACTGCCTCGTTTTTGAAGTCCAT
CCTCTCCGTCGGTT
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Coding sequence (CDS) from alignment at CM002471.1:26630..27893-

>rna7215 ID=rna7215|Name=rna7215|organism=Nannochloropsis gaditana|type=CDS|length=1530bp|location=Sequence derived from alignment at CM002471.1:26630..27893- (Nannochloropsis gaditana)
GCCACAGCGACGTATACGAATCCGATGCCGCACGCCTCTGCCCCTCCCCC
GTCCTCTGGCTCCTCCTTCAACCCGCCAGCCTACAGCGGGTTCTCCTCAG
GGCGGTGAATGAGTTTCAACCCCTGTCCTGCCAGCGCCCCTCCCTCCTGG
TACCCCGGCGAAGGCCTCCTAGTCACTGCAGATAATGTGGAGTTCTCGCT
GTCCCTCGGCCGGCTTCCCCCTCGACAGAGCAAGGCCACGTGTAAGGCCA
AGGGGCGCCTCCACCTCACCAACATCCGCCTGCTTTTCATCGCCACCAAA
CCAACGGCCAGCCCGGTTCCCGGCGGCCCGGAATTTGCCTCTTTCGACGT
CCCCCTGCGCGGCATCGTGGACGTGAAATTTAACCAACCCATTTTTGGCG
CGAACAATCTGCAAGGCAAAGTGACGCCGGTTTCTTGCCTGGAAGCGTCG
GCCCCTGTGGAATGGAAAGCCGCTTTTATCGCGGGGGGGACCACAGTCCT
CATCCCCACCTTGCTCCGTCTTATGGACCAATTGCACAGGGAGGCGCAAG
GGCAGGCAATACCAGCCCAGCAATTGCGAACGCCCCAACAACAGCCACAT
CACGGACAACCGCCGCAACCGCAACCACATGCACCGCAGCAGCAGCAGCC
CTGGTATGGGGGGGAGGGGACCTTGCCCGTCGCGCAGGCGGTAGCTCCCG
GCGTAGAGGGAGGAGGGTACATGGACCCAAGCGACCCCTCGCGGGTGCTG
GTGGACGCGCCAGTGGCCACAGCGACGTATACGAATCCGATGCCGCACGC
CTCTGCCCCTCCCCCGTCCTCTGGCTCCTCCTTCAACCCGCCAGCCTACA
GCGGGTTCTCCTCAGGGCGGTGAATGAGTTTCAACCCCTGTCCTGCCAGC
GCCCCTCCCTCCTGGTACCCCGGCGAAGGCCTCCTAGTCACTGCAGATAA
TGTGGAGTTCTCGCTGTCCCTCGGCCGGCTTCCCCCTCGACAGAGCAAGG
CCACGTGTAAGGCCAAGGGGCGCCTCCACCTCACCAACATCCGCCTGCTT
TTCATCGCCACCAAACCAACGGCCAGCCCGGTTCCCGGCGGCCCGGAATT
TGCCTCTTTCGACGTCCCCCTGCGCGGCATCGTGGACGTGAAATTTAACC
AACCCATTTTTGGCGCGAACAATCTGCAAGGCAAAGTGACGCCGGTTTCT
TGCCTGGAAGCGTCGGCCCCTGTGGAATGGAAAGCCGCTTTTATCGCGGG
GGGGACCACAGTCCTCATCCCCACCTTGCTCCGTCTTATGGACCAATTGC
ACAGGGAGGCGCAAGGGCAGGCAATACCAGCCCAGCAATTGCGAACGCCC
CAACAACAGCCACATCACGGACAACCGCCGCAACCGCAACCACATGCACC
GCAGCAGCAGCAGCCCTGGTATGGGGGGGAGGGGACCTTGCCCGTCGCGC
AGGCGGTAGCTCCCGGCGTAGAGGGAGGAGGGTACATGGACCCAAGCGAC
CCCTCGCGGGTGCTGGTGGACGCGCCAGTG
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Synonyms
Publications