EWM23475.1, cds7198 (CDS) Nannochloropsis gaditana

Overview
NameEWM23475.1
Unique Namecds7198
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002471.1:27229..27885 -
Alignment locationCM002471.1:26900..27007 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM23475.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101028g2.93.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002471.1supercontigCM002471.1:27229..27885 -
CM002471.1supercontigCM002471.1:26900..27007 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|585104542|gb|EWM23475.1| (hypothetical protein Naga_101028g2 [Nannochloropsis gaditana])

HSP 1 Score: 512.686 bits (1319), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVATATYTNPMPHASAPPPSSGSSFNPPAYSGFSSGR 254
            MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVATATYTNPMPHASAPPPSSGSSFNPPAYSGFSSGR
Sbjct:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVATATYTNPMPHASAPPPSSGSSFNPPAYSGFSSGR 254          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|553187655|ref|XP_005854651.1| (arabinogalactan protein [Nannochloropsis gaditana CCMP526] >gi|422294408|gb|EKU21708.1| arabinogalactan protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 441.425 bits (1134), Expect = 1.129e-155
Identity = 218/220 (99.09%), Postives = 218/220 (99.09%), Query Frame = 0
Query:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVA 220
            MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEG LPVAQAVAPGVEGGGYMDPSDPSRVLVDAPV 
Sbjct:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGNLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVV 220          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|553187658|ref|XP_005854652.1| (arabinogalactan protein [Nannochloropsis gaditana CCMP526] >gi|422294409|gb|EKU21709.1| arabinogalactan protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 337.035 bits (863), Expect = 4.296e-114
Identity = 221/260 (85.00%), Postives = 225/260 (86.54%), Query Frame = 0
Query:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPW---YGGEGTLPVAQAVAPGVEGGGYMDPSDPSRV---LVDAPVATATYTNPMPHASAPPPSSGSSFNPPAYSGFSSGR 254
            MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQP       EG     +       G G     +  R     ++   ATATYTNPMPHASAPPPSSGSSFNPPAYSGFSSGR
Sbjct:    1 MSFNPCPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPCGEGGREEGVEEGREGGVEKARGVGKEKGKEGKRCTWGTLEEHQATATYTNPMPHASAPPPSSGSSFNPPAYSGFSSGR 260          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|1179558976|ref|XP_020699464.1| (uncharacterized protein LOC110111796 [Dendrobium catenatum])

HSP 1 Score: 88.1965 bits (217), Expect = 1.168e-17
Identity = 70/241 (29.05%), Postives = 108/241 (44.81%), Query Frame = 0
Query:    1 MSFNP-CPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPV----EWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVATA-----TYTNPMPHA 231
            M+ NP   ++  P  + GE  ++  D VEF +   ++P   S    KAKG ++L+N+R++F+A KP  +       F +FD+PL  I + KFNQPIF  NN+ GKV PV   E    +     +K  F  GG    +P  L L+  +    Q    PA+ +            P+  P               L  AQ     +    Y+DP+DP+R+ +  P + +     TY  P  +A
Sbjct:    1 MALNPQLFSNGMPVPFLGEMFVLARDGVEFEVD--KIPGSGS-GHVKAKGIIYLSNVRIVFVAKKPVGN-------FVAFDMPLLHIHEDKFNQPIFHCNNISGKVEPVIPEEQHRALYSTHSFKILFKEGGCGTFVPLFLNLIQSVRHYNQHYNAPAEAV------------PRVDP---------------LQAAQTPVDEMIRSAYVDPNDPTRIFLQQPTSESQLRRRTYHQPAENA 204          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|1214687735|gb|OWZ03920.1| (Arabinogalactan protein [Phytophthora megakarya])

HSP 1 Score: 86.2705 bits (212), Expect = 1.654e-17
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 0
Query:   43 ATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQ 161
            A  K KGR++ T  R++F+A K        G  F +F++PL  + D KFNQPIFGA ++ G V P   +E S    WK  F  GGT V++P  LRLM++  R+ +G    +   R P  
Sbjct:   42 AVFKGKGRIYCTTQRIIFVAEKGITQ---NGCYFEAFEIPLVKMTDEKFNQPIFGACSISGLVAPSGSIEGSGNFSWKITFANGGTGVVLPVFLRLMEK--RKKKGSFTLSSYGRIPDN 155          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|1134889634|gb|OMJ86965.1| (hypothetical protein SteCoe_11438 [Stentor coeruleus])

HSP 1 Score: 88.1965 bits (217), Expect = 5.303e-17
Identity = 66/234 (28.21%), Postives = 103/234 (44.02%), Query Frame = 0
Query:   17 GEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLP-VAQAVAPG-VEGGGYMDPSDPSRVLVDAPVA------TATYTNPMPHASAPPPSSGSSF 242
            GE +++   ++E  ++L      ++    K KGRL+LT IRL+F+  K +          +SFD+P+  +   KFNQPIFGAN + G V P+  L      ++K  F++GGT   +P    ++DQ+ R                                       G  G  P   ++VA G ++   Y+DP+DPS + V  P           Y  P+P A+APP    SS+
Sbjct:   18 GEFMVLVRKDIEAEIAL------ENGTKYKGKGRLYLTTIRLVFVNEKRS--------NISSFDIPIDLMSHEKFNQPIFGANYISGSVKPLYNL-IPCNAKFKFWFMSGGTGTFLPMFYGIVDQIRRRRAN-----------------------------------GSNGPDPRFVESVASGNIQNVAYVDPNDPSVIFVLQPECPNPSQNNVNYYFPVPGATAPPLPMDSSY 201          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|1175867932|ref|XP_020587654.1| (uncharacterized protein LOC110029624 [Phalaenopsis equestris])

HSP 1 Score: 85.1149 bits (209), Expect = 1.809e-16
Identity = 65/226 (28.76%), Postives = 101/226 (44.69%), Query Frame = 0
Query:   15 YPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPV----EWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAPVATA-----TYTNPMPHA 231
            + GE  ++  D VEF +   ++P   S    KAKG ++++N+R++F++ KP  +       F +FD+PL  I + KFNQPIF  NN+ GKV PV   E    +     +K  F  GG    +P  L L+              Q +R  Q   H+    +  PH              L  AQ     +    Y+DP+DP+R+ +  P + +     TY  P  +A
Sbjct:   16 FVGEMFVLARDGVEFEVD--KIPGSGS-GHVKAKGIIYISNVRIVFVSKKPVGN-------FIAFDMPLLHIHEEKFNQPIFHCNNISGKVEPVIPEEHHRALYSTHSFKILFKEGGCGTFVPLFLNLI--------------QSVR--QYNQHYAAATEAAPHL-----------DPLQAAQTPVDEMMRCAYVDPNDPTRIFLQQPTSESQLRRRTYHQPAENA 204          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|586700289|ref|XP_006844782.1| (UPF0664 stress-induced protein C29B12.11c [Amborella trichopoda] >gi|548847253|gb|ERN06457.1| hypothetical protein AMTR_s00016p00259850 [Amborella trichopoda])

HSP 1 Score: 84.3445 bits (207), Expect = 3.848e-16
Identity = 59/208 (28.37%), Postives = 89/208 (42.79%), Query Frame = 0
Query:   15 YPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPV----SCLEASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAP 218
            +  E  +++ D VEF +      P       KAKG ++L+N+R+LF+A KP         +F +FD+PL  + D KFNQPIF  NN+ G V PV          +P  +K  F  GG    +P    L+  + +  Q     +    TP+  P     P                    PV + +        Y+DPSDP+R+ +  P
Sbjct:   16 FENEMFILSRDGVEFEIDKI---PTAPGGKIKAKGTIYLSNVRMLFVAKKPVG-------DFRAFDMPLLYVHDEKFNQPIFFCNNISGLVEPVVPEDQHRALYSPHSFKILFKEGGCGTFVPLFFNLIASVKQYNQHVTNTSSNDHTPRVDPLQANQP--------------------PVDEMMR-----HAYVDPSDPTRIYLQQP 188          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|813185825|ref|XP_012207084.1| (hypothetical protein SPRG_12335 [Saprolegnia parasitica CBS 223.65] >gi|641527993|gb|KDO22249.1| hypothetical protein SPRG_12335 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 82.8037 bits (203), Expect = 5.906e-16
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 0
Query:   46 KAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLE--ASAPVEWKAAFIAGGTTVLIPTLLRLMDQLHREAQG 148
            KA GR+++T  RL+F A K   +    G  F +F++PL  I D KFNQP+FG+ N+ G V PV   E   + P+EW+ +F  GGT   +P  LRLM+  H++  G
Sbjct:   43 KATGRIYITTQRLVFCADK---AATQHGRFFQAFEIPLDNIADDKFNQPMFGSCNISGDVFPVGTDEGDVATPIEWRVSFPNGGTGTFLPIFLRLME--HKKHAG 142          
BLAST of EWM23475.1 vs. NCBI_GenBank
Match: gi|1035914191|gb|OAY43784.1| (hypothetical protein MANES_08G097600 [Manihot esculenta])

HSP 1 Score: 83.5741 bits (205), Expect = 6.010e-16
Identity = 67/223 (30.04%), Postives = 96/223 (43.05%), Query Frame = 0
Query:    1 MSFNP-CPASAPPSWYPGEGLLVTADNVEFSLSLGRLPPRQSKATCKAKGRLHLTNIRLLFIATKPTASPVPGGPEFASFDVPLRGIVDVKFNQPIFGANNLQGKVTPVSCLEASAPV----EWKAAFIAGGTTVLIPTLLRLMDQLHREAQGQAIPAQQLRTPQQQPHHGQPPQPQPHAPQQQQPWYGGEGTLPVAQAVAPGVEGGGYMDPSDPSRVLVDAP 218
            M+ NP    +  P  +  E  ++T D VEF +   ++P        KAKG ++L+NIR++F+A KP  +       F +FD+PL  I   KFNQPIF  NN+ G V PV     +A +     +K  F  GG    IP    L+                +R   QQ   G  PQ  P               L  AQ     +    Y+DP+DP+R+ +  P
Sbjct:    1 MALNPQLFQNGMPVPFVNEIFVLTRDGVEFEID--KIPGSHG-GHVKAKGIIYLSNIRMVFVAYKPVGN-------FTAFDMPLLYIHGEKFNQPIFFCNNVSGLVEPVVPENENAALYSTHSFKILFKEGGCGTFIPLFFNLLS--------------SVRQYNQQQTSGMGPQMNP---------------LVAAQTPVDEMMRHAYVDPNDPTRIFLQQP 184          
The following BLAST results are available for this feature:
BLAST of EWM23475.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585104542|gb|EWM23475.1|0.000e+0100.00hypothetical protein Naga_101028g2 [Nannochloropsi... [more]
gi|553187655|ref|XP_005854651.1|1.129e-15599.09arabinogalactan protein [Nannochloropsis gaditana ... [more]
gi|553187658|ref|XP_005854652.1|4.296e-11485.00arabinogalactan protein [Nannochloropsis gaditana ... [more]
gi|1179558976|ref|XP_020699464.1|1.168e-1729.05uncharacterized protein LOC110111796 [Dendrobium c... [more]
gi|1214687735|gb|OWZ03920.1|1.654e-1738.66Arabinogalactan protein [Phytophthora megakarya][more]
gi|1134889634|gb|OMJ86965.1|5.303e-1728.21hypothetical protein SteCoe_11438 [Stentor coerule... [more]
gi|1175867932|ref|XP_020587654.1|1.809e-1628.76uncharacterized protein LOC110029624 [Phalaenopsis... [more]
gi|586700289|ref|XP_006844782.1|3.848e-1628.37UPF0664 stress-induced protein C29B12.11c [Amborel... [more]
gi|813185825|ref|XP_012207084.1|5.906e-1641.90hypothetical protein SPRG_12335 [Saprolegnia paras... [more]
gi|1035914191|gb|OAY43784.1|6.010e-1630.04hypothetical protein MANES_08G097600 [Manihot escu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna7215rna7215Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications