rna72, rna72 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna72
Unique Name	rna72
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3599
Alignment location	CM002455.1:200304..201814 +

Link to JBrowse

Properties


Property Name	Value
Product	protein kinase domain containing protein
Orig transcript id	gnl\|cribi\|Naga_100129g16.1893.mrna
Orig protein id	gnl\|cribi\|Naga_100129g16.1893
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:200304..201814 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100129g16	gene70	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna72	rna72-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30615.1	cds72	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:200304..201814+
coding sequence from alignment at CM002455.1:200304..201814+

mRNA sequence

>rna72 ID=rna72|Name=rna72|organism=Nannochloropsis gaditana|type=mRNA|length=3599bp
TAGGTATCAATGGCGAGTTCGTCGTATGAACTTGAACTTGCTTTAGGTGG
AAAACATTACTCTGTGATACGCGGGAGCGTCCACGCTTGATTGCCCTCTA
TTGGACTGATGGGTTTTAACACGGACATCCTTTATCCATCTTCTTCCGAC
AACATCCAGGAAGGCATTGGCCTGACTCATGTACAAGGAAAAACAGACAA
CATAATTGGCCGCTTTATCAAGTCGCCTTTCTTGCTTCACATTTCTTTAA
CGCGATTGGCCGGCCTGTCCTTGTCACCATCGCTGTCAAGTTCTGGAGGC
TTTTTCTGCTGTGTGCACCGCTTCCCTCCTTGCCTTCCCTGCCTTAAAGA
GGTCGGCGTTGCGCGCTTGGAAGGAAAACGCGCCACGGGCACAACGAAAA
AGCGGGAAGACGGGCATACAAGGGAGAGCATTAAGGCTTGCGTGCAGAGA
TACGCATCGGCGGTGTCGTTTGTTTTGTTTGATTTGAGGCATCGCTTGGT
TTTTCTCTCTGCTCCTGTTAGAAGTACCACTCAAGCACCGCGGCCTCGGA
CCCAGCGGGCGTCGCCTTTCGCACTGTGCTCTCTTCTTATTGGACCGTCA
AAGCTGGGTGTTGAATCTCTAGCTTTCCCTCTCCATCTTCCACTGCAAAA
GCACCGCCCGCCCCGGCATTTCTTACAGAGGCTTCGCCCACGTGTGTGTA
ATTGACCCCATATCTCCTGCCTTTCCTCTATCTCTGCCGTGTGTGGGTAG
TGTTTCTGTAGATCGTAATAATTGAGTCCACCACCCTGTTTGATAATTTA
CGAAGGCCATGAGTGCCCCGCCCCCGCCCCCGCCCCCCGCCTCCGCCCCC
TCCCCCTCCCCCTCCCCCATCATCGTCCAAAGAAAGCTGGGCCACAGTCG
TCACGGAGGCGCAGGCGGTCTCGGATTCCACCCTCAACGCCAGCACGAAC
CACCAGGCCTGGTACGCATCACAGCAGCAGCAACACCAGCCCTGGGGTCA
GTATTCCGGGTATTCGACCTACCATTACACCCAGCCGGGTCCATATTCCA
TGCATGCCGCCGCGTATTCGACGCCAACGCCTCAACAAGAGGCGTCCCCG
GAGGCGGCAGCCGAGGCAGCGCGGGTCCTGGCCTGGCAACAGTACTACGC
CGCCCAACAGCACCAATACGCAGCGTACTACCAACACCAGCCACGACCCG
GCGACGCCTCCCTTCCCTACTCTGCCGGAGGGCTGGCTTCGTCCCCTCTC
CCTGCCGCTCCCCCTTCTCAGCAACAGGCAGGAGCAGCACCCACGCCCAG
CTATGCGCAGGTGGTGACGGGGCAGGGCGGCCCCGGGGTCTCCCAGCCCC
AATCGGCTGCTCCGACCGTGCGAGTCACGGAAGATTCCGTGCGGCGGGCG
GAGTTGGAACGGATGGCGGTGGAATACAGGAACAGCCAGGTAAGCAACAC
AGGAGCCCGGGCAGAGACAGGGCGTGGGCCCGTGCCGGCCCATGCCTCCA
ACCGCTTCGCGGCCGCGCGGACGTCCGCCCCCCTTCCCCCGACGAAAAAG
GAGAAAAGTGGAGGGAAATCGGGGTCGGCAGCCCCTCCGGCCTTAAACCG
GTGGGTGGAGAAATGCTTCCTCTCCGTCGCCCATTCCTTGTCGCAGCAGG
AAGAAATGGAAGCGGCGCTTTCCTCCTACGTGAAGGAGTTGGCGCAACGG
AACGAACTGTGGAGCGTAGATTGGGCAACGAAACCTTTGCTCTCGTTGCC
TCTGGCGTCGTCCTTCCCCGCGGGGGGGACTGCGTATCATCAAGGTAAAA
AACGCGAGCGCGAGGTCTCGCCTTCCCCTCGCTCTGTCCCACGGCGACGG
GGGGAGGAGGTGGAAGAGGGGGAGGTGAGGAATGGTAGATGGCGAAGCCC
CACGGACGGCCGCCGGTACAGTGAGAGTGAGGAGGAGATGGAGGAGGGGG
AGGAAGACGAGGAGGAGTCGTACCGCTGGGGAGGGACGCGCGGCCGGGGC
AGAGGACGCAGGGACGGGCGTGGTCCCGCCCAAGAGCTGGAAGGTCGGGC
GGGGAAGAGGGCGAGGAAGAGGAAGGGAGGGAAAGGGGGGATGAACGTGG
GTAAGTACGGACCGAGTGGCGGGGAAGGTAAGTACGGCCCCGGGGGAGGA
GGGGACACGGGTCTGTCCGCGGAGGAAGAGGAAGCGAAGCGACGGCGGCA
GGCGCGCTTCGACGATCGACGGTGGCGGCCTCGGACGGTGGGGAGGAGTA
CGAACGTCTCGGATTTCTTTGACGGGAGGGGAGCGCCGGGGGAGGGCGGC
TTTGATTTCCGGGAGGTGAAGGCGGTGGTGGGGAGATGCCAGGAGGTGGA
GAAAGAATACTTCCGGCTCAACGAGGTCCCGGACCCGGCCTCCGTTCGCC
CTGAGCCCGTCCTTCGCCAGGCCCTGGCACGGCTCCTCCGCCGGTTCCAC
GCCCTTCCCCCGCTGCAATCGGCGCGGGAGGCGGACTACAAGGAATATCT
GTGGACGCAATTTAAGGCCATTCGACAGGACTTGCTCATCCAAAATTTGA
AGAATGCCTTCGCCGTGGAAGTGTACGAGGCCCACGCCCGGGTGGCGCTG
GCGTGCAACGACTTGAACGAGTACAACCAGTGTCAAACCCAACTGATGGA
ACTTTACAAGGAAGCGGACCTTCCCCCAGAGGCCCTGGCCCATGCGCCAG
AATTCACCGCCTACCGGGTGCTGTACTACGTGTACCTGCAGAGCAACCCT
AAATACGCGGACGGCGATAGCGGGGTCCTGCGGGTCCTGGCACAGCTCTC
CAACACGGACAAACAAGCAACGGCCGTGCGGCATGCCTTGGCAGTCCGCC
GCGCCGCTGTCGTGGGGAATTATCACCGGCTGGGTATTCTGTATCGGGAG
GCACCGGGGGAAGGAAGGAGGATCATGAAGCATTTTATGGATCAGGCCAG
GGTGAGGGCGATGCAGACGATGGTAAAGGCGTACAAACCAACGTTGCCAG
CAAAATTCGTGGAGGCGGAACTAGGTTTTGGCAAGTTGTCGACCAAGGAC
GGAGAGAAAGTGGAAGATGGAGAAGAGGAGTCTGCGCGCTCTTTTATCGA
AAGGGTTGGATGGGTTTTGGCAGGAGACGAAGGTCCGAACGGTGGGCGTG
AGGTTTACTGGGACATGAAGGCCTCGAAAGTGGATCCGGCGGCGGCGGTG
ACAAGAACGCTCATGTAATGGCTTTCATGAAAGCACACGTAAATCGGTGT
GAAAGGAACATATTTGTTAGATTGCAGGAGGGTGGTATACGTCTTTCTTC
AGTTGTTCCAGGAACGACATTCAAGTCAATACTGTAGATACATACCCCCG
AAACATCGCCTCAATTCAATCTAGCTTTGCACTCCACCTGCGCACATTCT
TGCCAAACATTGGTCGTCATTTGTTGCTTACGTTGCACAACCGGGAGTTG
AAATCAAATTGAAGCCACTCATCAAACTGCTCTTGAGAAACATCCGCGTG
CATCCTCCATCCAAACCTGCGTCTAAAGGAATATCTCTGTAAGACCTACA
ATATCAAAACTGATTTATTTTAACCCAATGATACTTTTAATAAAGAATT

protein sequence of rna72

>rna72-protein ID=rna72-protein|Name=rna72|organism=Nannochloropsis gaditana|type=polypeptide|length=386bp
MRRLGPYYLGQTIGEGTFGRVKAGVHALTGEKVAIKLLEKNRIVDAGDVR
RVTREIDILKRNRHRNIIQLYDVLDTPARIYLVMENADGGELFDYIVKRQ
RVPEPEASAFFKQLVDGVGYLHAMEVTHRDLKPENLLLQSSKSAPGGWCV
KIIDFGLSNTHEAGTLLSTACGSPCYACPEMIRGLAYRGPAADVWSMGVI
LYAMVCGYLPFEHTNISKLYHKILAGRYTVPSFLSPGVKDLIAKILVIDP
QTRYSIPDIQRHPWYRQLGTGKRKDVKATQYQEARPPPGADCKEEEDGTG
CSPPDVNVKLDENVLQEAVSLGLDREELLNALRLHAFGSLTATYHLLNRR
RNSHGTPDFAGMDQGSNHLLLLAPSGIHRQQRQDQA

mRNA from alignment at CM002455.1:200304..201814+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna72 ID=rna72|Name=rna72|organism=Nannochloropsis gaditana|type=mRNA|length=1511bp|location=Sequence derived from alignment at CM002455.1:200304..201814+ (Nannochloropsis gaditana)
ATGCGCCGTCTTGGTCCCTACTACCTCGGCCAAACCattggagaaggaac
gtTTGGACGGGTAAAGGCGGGCGTGCATGCCCTGACGGGAGAAAAAGTGG
CCATCAAACTCCTGGAAAAAAACAGAATCGTAGACGCCGGTGACGTGCGG
CGGGTGACCCGAGAGATCGACATCCTGAAACGCAACCGGCACCGAAACAT
CATTCAGTTGTACGATGTGCTCGATACTCCTGCAAGGATCTACTTGGTCA
TGGAGAACGCGGACGGGGGCGAGCTTTTCGACTACATCGTGAAACGACAG
CGTGTCCCCGAGCCGGAGGCCTCGGCGTTTTTCAAGCAGCTGGTCGACGG
CGTCGGTTATTTGCATGCCATGGAGGTGACTCATCGGGATTTAAAACCAG
AAAATTTGTTGTTGCAGTCCTCTAAAAGCGCCCCCGGGGGTTGGTGCGTG
AAAATCATCGATTTCGGCCTGTCCAACACCCATGAAGCTGGTACACTGCT
GTCTACAGCCTGTGGCTCCCCGTGCTATGCCTGCCCTGAAATGATCCGCG
GACTTGCCTACCGAGGCCCAGCTGCTGATGTCTGGAGCATGGGAGTCATT
TTGTATGCCATGGTCTGCGGGTACCTCCCTTTCGAGCACACCAACATTTC
CAAACTCTACCACAAAATCCTGGCGGGGCGCTACAcggtcccttccttcc
tctctcccggtGTGAAGGACTTGATTGCCAAGATCCTCGTTATCGACCCT
CAGACACGCTACTCCATTCCCGATATTCAGCGCCACCCGTGGTATCGGCA
GCTCGggacggggaaaagaaaggacgTCAAGGCGACTCAATACCAGGAAG
CTCGTCCGCCCCCGGGGGCCGActgcaaagaagaggaagatgggaCAGGC
TGCAGCCCCCCTGATGTCAACGTGAAGCTCGACGAGAACGTGCTCCAAGA
AGCAGTGTCCCTCGGATTGGACCGGGAGGAGCTCCTGAATGCCTTGCGAC
TGCACGCCTTCGGCTCCCTGACTGCCACCTACCACCTTCTTAATAGACGA
AGAAATTCCCATGGCACGCCCGATTTCGCGGGAATGGATCAGTCACAAAG
GGAAACGCCGCTCGAGAATGAAACCTCTCTTTCACCTGTGCCAGTCTCCG
ACGTCAGATTGTCTcgatcctccccctcctcgacagcAACCCCATCATCT
GCCGccggatcctcctcctcctcgtcctcctcctcctcctcttcctcctc
ctcctcgtcctcctcctcctcctccgcttcgtACTCTAGCCATCGAAACG
AGGAGGCCTTCAATCCGCAGGCAAACACGGCGTGGAGTAAGCCTGCACTA
ACCATCGTCCCCTCCTATAGACGCCAGACGATCTCGGGGGCGGGCAAAAT
TAGTCGTACTATAACCAATCGGCTCTACTCTCCAACCCCAGGGGGAGCAA
CCACCTTCTCTTGCTGGCACCGTCGGGCATCCAcaggcagcagcggcagg
aCCAAGCATAA

Coding sequence (CDS) from alignment at CM002455.1:200304..201814+

>rna72 ID=rna72|Name=rna72|organism=Nannochloropsis gaditana|type=CDS|length=2322bp|location=Sequence derived from alignment at CM002455.1:200304..201814+ (Nannochloropsis gaditana)
ATGCGCCGTCTTGGTCCCTACTACCTCGGCCAAACCattggagaaggaac
gtTTGGACGGGTAAAGGCGGGCGTGCATGCCCTGACGGGAGAAAAAGTGG
CCATCAAACTCCTGGAAAAAAACAGAATCGTAGACGCCGGTGACGTGCGG
CGGGTGACCCGAGAGATCGACATCCTGAAACGCAACCGGCACCGAAACAT
CATTCAGTTGTACGATGTGCTCGATACTCCTGCAAGGATCTACTTGGTCA
TGGAGAACGCGGACGGGGGCGAGCTTTTCGACTACATCGTGAAACGACAG
CGTGTCCCCGAGCCGGAGGCCTCGGCGTTTTTCAAGCAGCTGGTCGACGG
CGTCGGTTATTTGCATGCCATGGAGGTGACTCATCGGGATTTAAAACCAG
AAAATTTGTTGTTGCAGTCCTCTAAAAGCGCCCCCGGGGGTTGGTGCGTG
AAAATCATCGATTTCGGCCTGTCCAACACCCATGAAGCTGGTACACTGCT
GTCTACAGCCTGTGGCTCCCCGTGCTATGCCTGCCCTGAAATGATCCGCG
GACTTGCCTACCGAGGCCCAGCTGCTGATGTCTGGAGCATGGGAGTCATT
TTGTATGCCATGGTCTGCGGGTACCTCCCTTTCGAGCACACCAACATTTC
CAAACTCTACCACAAAATCCTGGCGGGGCGCTACAcggtcccttccttcc
tctctcccggtGTGAAGGACTTGATTGCCAAGATCCTCGTTATCGACCCT
CAGACACGCTACTCCATTCCCGATATTCAGCGCCACCCGTGGTATCGGCA
GCTCGggacggggaaaagaaaggacgTCAAGGCGACTCAATACCAGGAAG
CTCGTCCGCCCCCGGGGGCCGActgcaaagaagaggaagatgggaCAGGC
TGCAGCCCCCCTGATGTCAACGTGAAGCTCGACGAGAACGTGCTCCAAGA
AGCAGTGTCCCTCGGATTGGACCGGGAGGAGCTCCTGAATGCCTTGCGAC
TGCACGCCTTCGGCTCCCTGACTGCCACCTACCACCTTCTTAATAGACGA
AGAAATTCCCATGGCACGCCCGATTTCGCGGGAATGGATCAGGGGAGCAA
CCACCTTCTCTTGCTGGCACCGTCGGGCATCCAcaggcagcagcggcagg
aCCAAGCATAAATGCGCCGTCTTGGTCCCTACTACCTCGGCCAAACCatt
ggagaaggaacgtTTGGACGGGTAAAGGCGGGCGTGCATGCCCTGACGGG
AGAAAAAGTGGCCATCAAACTCCTGGAAAAAAACAGAATCGTAGACGCCG
GTGACGTGCGGCGGGTGACCCGAGAGATCGACATCCTGAAACGCAACCGG
CACCGAAACATCATTCAGTTGTACGATGTGCTCGATACTCCTGCAAGGAT
CTACTTGGTCATGGAGAACGCGGACGGGGGCGAGCTTTTCGACTACATCG
TGAAACGACAGCGTGTCCCCGAGCCGGAGGCCTCGGCGTTTTTCAAGCAG
CTGGTCGACGGCGTCGGTTATTTGCATGCCATGGAGGTGACTCATCGGGA
TTTAAAACCAGAAAATTTGTTGTTGCAGTCCTCTAAAAGCGCCCCCGGGG
GTTGGTGCGTGAAAATCATCGATTTCGGCCTGTCCAACACCCATGAAGCT
GGTACACTGCTGTCTACAGCCTGTGGCTCCCCGTGCTATGCCTGCCCTGA
AATGATCCGCGGACTTGCCTACCGAGGCCCAGCTGCTGATGTCTGGAGCA
TGGGAGTCATTTTGTATGCCATGGTCTGCGGGTACCTCCCTTTCGAGCAC
ACCAACATTTCCAAACTCTACCACAAAATCCTGGCGGGGCGCTACAcggt
cccttccttcctctctcccggtGTGAAGGACTTGATTGCCAAGATCCTCG
TTATCGACCCTCAGACACGCTACTCCATTCCCGATATTCAGCGCCACCCG
TGGTATCGGCAGCTCGggacggggaaaagaaaggacgTCAAGGCGACTCA
ATACCAGGAAGCTCGTCCGCCCCCGGGGGCCGActgcaaagaagaggaag
atgggaCAGGCTGCAGCCCCCCTGATGTCAACGTGAAGCTCGACGAGAAC
GTGCTCCAAGAAGCAGTGTCCCTCGGATTGGACCGGGAGGAGCTCCTGAA
TGCCTTGCGACTGCACGCCTTCGGCTCCCTGACTGCCACCTACCACCTTC
TTAATAGACGAAGAAATTCCCATGGCACGCCCGATTTCGCGGGAATGGAT
CAGGGGAGCAACCACCTTCTCTTGCTGGCACCGTCGGGCATCCAcaggca
gcagcggcaggaCCAAGCATAA

Synonyms

Publications