rna7196, rna7196 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7196
Unique Name	rna7196
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1059
Alignment location	CM002470.1:683501..685692 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100198g3.5729.mrna
Orig protein id	gnl\|cribi\|Naga_100198g3.5729
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002470.1	supercontig	CM002470.1:683501..685692 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100198g3	gene6959	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7196	rna7196-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23487.1	cds7179	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002470.1:683501..685692-
coding sequence from alignment at CM002470.1:683501..685692-

mRNA sequence

>rna7196 ID=rna7196|Name=rna7196|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp
ATGCTTCTGCATGGACTCTCCATCTCACCTTTGTTGTCCTTCCTCCCTCT
TGTCCTCCTTCGAGTAGATCCAGAAGGTGGCCGAGGACGTGGATGCCCTC
AAGGCTCAGATCAGCGACCTGAACAAGGTCGCTCCTCGGAGAGAGTGCTG
GAGGAGCTTCAGGGGCGCTGTGCGAGCTTTGTGAAGGGGCTGATGCACGG
GCTCGACGTTCTGGACGAGATGCACGTGACGGAAAAGGACCGGCCCTTAA
GGAAGAGTCAAGTGATGCAAATCCAGCAGCTGATCGACGACGTGGAGCAA
ACGAAGGAGCGCCTCCGCGGGCTCCGGGCCGAGCTGGCAGCTCAACAGCA
GGAGAAGGAGAAGGAGGAGGAAGGGAAGAGGAGGGAGAAGGGGAAGGAAG
CGGGCGCAGCACAGGGAGAGGAGGAGGGGCAGGGACGGGCCGGTCAACGC
CGGTCGCCTCCCCCCCCCTCCCGCACCCCCTCACTCGCTCACCTTGCCTC
CCTCCTTGCCCCGCACTGGCGGCAAATGAAAATGCGTCCGCGCTTCGAGA
GCGGCAGCACTCCGCAGGCCTACGTGCTGGCCGCCCGACTGCCCAACATG
AAGCTCGCGAACCTGTCAGTGACGCTGGGAGCGAGGGGGGAGTCTTTGAT
CGTCAAAGGCTTCCGGGGCCCAACGCAGGAGGAGGTGGGAAGTTTGGTAG
AAGCGGTGCGACGGAGCGGGAGAGGGGGGGGGAGGGAGGGCGTGAGGCTG
GAAGACCTGTTGGCGGCGGGGGCGGAGCGCTTCGGTTCCTTTGTGGAGAC
GGTGCGGGTGCCGGAGGACGCAGACGCGGATGGGGTAGAAGCCACCTATG
AGAAGGGGACGCTGCGGATCATCATCCCCCGCCGGCCAGCCCTCCCCCCC
TCCTTCCCTCCACGCCCACCCCCTCCGGTCCGTCCTGTCTACGCGCCTCA
GCAGCCGGCCCTCTTCCACCCCTCGATGGGGGGCTACTACCAAGGGGTGG
GCGGGCGGAGGGGGATGGCGCCCGGAGGGTTTTGGGGAGACCAGGATGTC
TGGTGGTAA

protein sequence of rna7196

>rna7196-protein ID=rna7196-protein|Name=rna7196|organism=Nannochloropsis gaditana|type=polypeptide|length=382bp
MLRRRRKRLLSTSASILGLFVVVILLLLPTRAAALSRKQRILNWFAEASQ
GGGDQKANKAVEDEALAVNSLTSIMKSSGESLPGTIAPPPLLDQMLTLFA
SLGLPPDTLSHMSELTPEEIVHGLSTVMPTKTLHLRVGDEAVVDEATTLE
LTGVTDNRCPIGAQCITDGKATAMLTVRQEMIVPYKIEVGLGRAVLLQRG
YEVSCEEITPRPGALVSSVLVSTSPSTELVEGSKTGAEQSEYRVRLRVAL
PTERMNGLVQGVLKWVKSNAMVRGYEFSQRRMCFCPQATIRPVRLDVSAW
SQGVKGVYEDRPNGAVPPEALAEYKTVGDLFLLLTQAYALNADRVEASYD
PVFGYPNRIYIDQSADMADDDVMYEASALKIK

mRNA from alignment at CM002470.1:683501..685692-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7196 ID=rna7196|Name=rna7196|organism=Nannochloropsis gaditana|type=mRNA|length=2192bp|location=Sequence derived from alignment at CM002470.1:683501..685692- (Nannochloropsis gaditana)
AGTCAGACAAAGTCATCTCTAGATTTAAGTTCTTCAAATTTGGAGTAAAA
CACCTCGAAGGCCTGAGTGCATCTCTCTCTTCTCCGAAGTTGCCCAATTT
CATGTACTTGTCCTCTTTCGGTAAATTACATTACAGACATAGTAACTCCG
CGGGACTCTCTCCTTTCTGGTTTTTGAGGAACAGAGTCCCATGACCGACG
AGTGAAGAAGCGGCCATTTCGCAATTTCCTAGGCGGTGTGGTTCGTGTAA
GTAGGAAAATTCCAGCGGAAAGCCCGCCGGCTACCGCCTATCACGAAATG
CTGAGACGTCGTCGTAAAAGGCTACTTTCAACGTCAGCAAGCATACTCGG
CCTCTTCGTAGTAGTTATATTGCTACTTTTACCAACAAGGGCCGCTGCAC
TCTCTCGGAAGCAGAGGATTCTGAATTGGTTTGCCGAAGCATCACAGGGT
GGTGGAGATCAAAAGGCAAATAAAGCGGTGGAAGATGAAGCCCTTGCAGT
GAATTCCCTGACATCCATCATGAAGAGCTCCGGCGAGTCCCTACCTGGGA
CAATCGCACCACCCCCTCTACTGGATCAGATGCTTACACTCTTTGCGTCT
CTCGGCCTGCCCCCTGACACTTTATCCCACATGAGTGAGCTCACGCCAGA
AGAAATCGTACACGTAAGTTTTGAAACATTGTGAGCTGCGTTCGGGTGGT
GTTGTTGCTAACCGAAAAAAATGAATTACTGCTTAACACAGGGCCTTTCC
ACCGTTATGCCTACCAAGACTCTCCATCTACGCGTGGGAGACGAGGCAGT
CGTGGATGAGGTACGTCAAAAGTTGAACTTAAATAGTTTGCTCGCAAAAT
GGTCCGTGTGCTGTATAGCTCATCCATGTTCCCATAATCGCGCAGGCGAC
AACGCTGGAGTTGACGGGCGTGACGGACAACCGCTGTCCTATAGGTGCTC
AATGCATTACAGATGGGAAAGCCACCGCCATGCTTACCGTCAGACAAGAA
ATGATTGTTCCATACAAGATAGAAGTGGGTCTGGGAAGAGCCGTTCTCTT
GCAGCGGGGTTACGAGGTGAGCTGCGAGGAGATCACCCCGCGGCCAGGCG
CGTTGGTTTCTTCCGTGCTGGTGTCCACCAGCCCCTCCACCGAGCTCGTG
GAGGGCTCGAAGACCGGCGCGGAGCAATCCGAGTACCGCGTGCGACTGCG
GGTGGCCTTGCCTACGGAGCGCATGAACGGGTTGGTCCAAGGGGTTCTAA
AGTGGGTAAAGTCCAACGCGATGGTCCGAGGCTATGAGTTCAGCCAGCGT
CGAATGTGCTTCTGTCCCCAGGCCACCATCCGGCCCGTCCGACTCGATGT
CAGCGCATGGAGCCAGGGGGTGAAGGGCGTCTACGAGGACCGTCCTAATG
GGGCCGTCCCCCCCGAGGCCCTGGCGGAGTACAAGACGGTCGGAGACCTT
TTCCTGCTCTTGACTCAGGCCTACGCGCTCAACGCCGACCGCGTGGAGGC
ATCCTATGACCCTGTCTTCGGCTACCCTAACCGGATATATATCGACCAGT
CTGCAGATATGGCAGACGACGATGTCATGTACGAAGCCTCCGCGTTGAAG
ATCAAGTAGTTTGACAGTGATGGTAGGCATTCGAAGGGCTGGACATGTGA
CATCTTAAGAGTCTGGGGAGGTGATGATGGTGCAGCTGAAGTGGTCCGAT
GGCAAATAAACGAGAGGAGAATCATGTTCATTGATTCCGGTGGAGTATCA
GTTTCTTACTGGTGGGCACAAGGTCCTCGTTGCTCCATGTTGCCCGCGAG
GATGATCAGAAAAGCGTCCAAAGGGGGGGAGCGGGCTATCCATTTGCTTT
AATCAACGATTGAGCAACCAAATATGTGCAAAGTTTGCCCGTGCTGTTTT
CTGGATGTGTGGACAGGGTCGTTAGAATCCCGAATAAAGCCTTGATTGGA
GAAGGAGGACGGATTGTGCAGGAGTAAGGGGGCAGGAAAGGGCCGGATGC
AGATGGAGGAAGCTCGGTCAACGAGGGAATGACAGAGCGCACACATTTCG
ACCGTGCACGTGAGCGACGTGATGCACTGAATCTGAAGGTCCGCGAAGAC
ATGTATTTAGCAGAGCACGGGCAGGTAATGGCTGCATTGAATGAGTCGAA
TGAAAGAACATGCAGCCGCGTAAGGTTTTGGGGTACCAGCAG

Coding sequence (CDS) from alignment at CM002470.1:683501..685692-

>rna7196 ID=rna7196|Name=rna7196|organism=Nannochloropsis gaditana|type=CDS|length=3447bp|location=Sequence derived from alignment at CM002470.1:683501..685692- (Nannochloropsis gaditana)
GCGACAACGCTGGAGTTGACGGGCGTGACGGACAACCGCTGTCCTATAGG
TGCTCAATGCATTACAGATGGGAAAGCCACCGCCATGCTTACCGTCAGAC
AAGAAATGATTGTTCCATACAAGATAGAAGTGGGTCTGGGAAGAGCCGTT
CTCTTGCAGCGGGGTTACGAGGTGAGCTGCGAGGAGATCACCCCGCGGCC
AGGCGCGTTGGTTTCTTCCGTGCTGGTGTCCACCAGCCCCTCCACCGAGC
TCGTGGAGGGCTCGAAGACCGGCGCGGAGCAATCCGAGTACCGCGTGCGA
CTGCGGGTGGCCTTGCCTACGGAGCGCATGAACGGGTTGGTCCAAGGGGT
TCTAAAGTGGGTAAAGTCCAACGCGATGGTCCGAGGCTATGAGTTCAGCC
AGCGTCGAATGTGCTTCTGTCCCCAGGCCACCATCCGGCCCGTCCGACTC
GATGTCAGCGCATGGAGCCAGGGGGTGAAGGGCGTCTACGAGGACCGTCC
TAATGGGGCCGTCCCCCCCGAGGCCCTGGCGGAGTACAAGACGGTCGGAG
ACCTTTTCCTGCTCTTGACTCAGGCCTACGCGCTCAACGCCGACCGCGTG
GAGGCATCCTATGACCCTGTCTTCGGCTACCCTAACCGGATATATATCGA
CCAGTCTGCAGATATGGCAGACGACGATGTCATGTACGAAGCCTCCGCGT
TGAAGATCAAGTAGGGCCTTTCCACCGTTATGCCTACCAAGACTCTCCAT
CTACGCGTGGGAGACGAGGCAGTCGTGGATGAGATGCTGAGACGTCGTCG
TAAAAGGCTACTTTCAACGTCAGCAAGCATACTCGGCCTCTTCGTAGTAG
TTATATTGCTACTTTTACCAACAAGGGCCGCTGCACTCTCTCGGAAGCAG
AGGATTCTGAATTGGTTTGCCGAAGCATCACAGGGTGGTGGAGATCAAAA
GGCAAATAAAGCGGTGGAAGATGAAGCCCTTGCAGTGAATTCCCTGACAT
CCATCATGAAGAGCTCCGGCGAGTCCCTACCTGGGACAATCGCACCACCC
CCTCTACTGGATCAGATGCTTACACTCTTTGCGTCTCTCGGCCTGCCCCC
TGACACTTTATCCCACATGAGTGAGCTCACGCCAGAAGAAATCGTACACG
CGACAACGCTGGAGTTGACGGGCGTGACGGACAACCGCTGTCCTATAGGT
GCTCAATGCATTACAGATGGGAAAGCCACCGCCATGCTTACCGTCAGACA
AGAAATGATTGTTCCATACAAGATAGAAGTGGGTCTGGGAAGAGCCGTTC
TCTTGCAGCGGGGTTACGAGGTGAGCTGCGAGGAGATCACCCCGCGGCCA
GGCGCGTTGGTTTCTTCCGTGCTGGTGTCCACCAGCCCCTCCACCGAGCT
CGTGGAGGGCTCGAAGACCGGCGCGGAGCAATCCGAGTACCGCGTGCGAC
TGCGGGTGGCCTTGCCTACGGAGCGCATGAACGGGTTGGTCCAAGGGGTT
CTAAAGTGGGTAAAGTCCAACGCGATGGTCCGAGGCTATGAGTTCAGCCA
GCGTCGAATGTGCTTCTGTCCCCAGGCCACCATCCGGCCCGTCCGACTCG
ATGTCAGCGCATGGAGCCAGGGGGTGAAGGGCGTCTACGAGGACCGTCCT
AATGGGGCCGTCCCCCCCGAGGCCCTGGCGGAGTACAAGACGGTCGGAGA
CCTTTTCCTGCTCTTGACTCAGGCCTACGCGCTCAACGCCGACCGCGTGG
AGGCATCCTATGACCCTGTCTTCGGCTACCCTAACCGGATATATATCGAC
CAGTCTGCAGATATGGCAGACGACGATGTCATGTACGAAGCCTCCGCGTT
GAAGATCAAGTAGGGCCTTTCCACCGTTATGCCTACCAAGACTCTCCATC
TACGCGTGGGAGACGAGGCAGTCGTGGATGAGATGCTGAGACGTCGTCGT
AAAAGGCTACTTTCAACGTCAGCAAGCATACTCGGCCTCTTCGTAGTAGT
TATATTGCTACTTTTACCAACAAGGGCCGCTGCACTCTCTCGGAAGCAGA
GGATTCTGAATTGGTTTGCCGAAGCATCACAGGGTGGTGGAGATCAAAAG
GCAAATAAAGCGGTGGAAGATGAAGCCCTTGCAGTGAATTCCCTGACATC
CATCATGAAGAGCTCCGGCGAGTCCCTACCTGGGACAATCGCACCACCCC
CTCTACTGGATCAGATGCTTACACTCTTTGCGTCTCTCGGCCTGCCCCCT
GACACTTTATCCCACATGAGTGAGCTCACGCCAGAAGAAATCGTACACGC
GACAACGCTGGAGTTGACGGGCGTGACGGACAACCGCTGTCCTATAGGTG
CTCAATGCATTACAGATGGGAAAGCCACCGCCATGCTTACCGTCAGACAA
GAAATGATTGTTCCATACAAGATAGAAGTGGGTCTGGGAAGAGCCGTTCT
CTTGCAGCGGGGTTACGAGGTGAGCTGCGAGGAGATCACCCCGCGGCCAG
GCGCGTTGGTTTCTTCCGTGCTGGTGTCCACCAGCCCCTCCACCGAGCTC
GTGGAGGGCTCGAAGACCGGCGCGGAGCAATCCGAGTACCGCGTGCGACT
GCGGGTGGCCTTGCCTACGGAGCGCATGAACGGGTTGGTCCAAGGGGTTC
TAAAGTGGGTAAAGTCCAACGCGATGGTCCGAGGCTATGAGTTCAGCCAG
CGTCGAATGTGCTTCTGTCCCCAGGCCACCATCCGGCCCGTCCGACTCGA
TGTCAGCGCATGGAGCCAGGGGGTGAAGGGCGTCTACGAGGACCGTCCTA
ATGGGGCCGTCCCCCCCGAGGCCCTGGCGGAGTACAAGACGGTCGGAGAC
CTTTTCCTGCTCTTGACTCAGGCCTACGCGCTCAACGCCGACCGCGTGGA
GGCATCCTATGACCCTGTCTTCGGCTACCCTAACCGGATATATATCGACC
AGTCTGCAGATATGGCAGACGACGATGTCATGTACGAAGCCTCCGCGTTG
AAGATCAAGTAGGGCCTTTCCACCGTTATGCCTACCAAGACTCTCCATCT
ACGCGTGGGAGACGAGGCAGTCGTGGATGAGATGCTGAGACGTCGTCGTA
AAAGGCTACTTTCAACGTCAGCAAGCATACTCGGCCTCTTCGTAGTAGTT
ATATTGCTACTTTTACCAACAAGGGCCGCTGCACTCTCTCGGAAGCAGAG
GATTCTGAATTGGTTTGCCGAAGCATCACAGGGTGGTGGAGATCAAAAGG
CAAATAAAGCGGTGGAAGATGAAGCCCTTGCAGTGAATTCCCTGACATCC
ATCATGAAGAGCTCCGGCGAGTCCCTACCTGGGACAATCGCACCACCCCC
TCTACTGGATCAGATGCTTACACTCTTTGCGTCTCTCGGCCTGCCCCCTG
ACACTTTATCCCACATGAGTGAGCTCACGCCAGAAGAAATCGTACAC

Synonyms

Publications